RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 08-Jul-2021 07:02:31 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O15554/2_msa/O15554_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O15554/3_mltree/O15554 --seed 2 --threads 6 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O15554/2_msa/O15554_trimmed_msa.fasta [00:00:00] Loaded alignment with 597 taxa and 403 sites WARNING: Sequences tr_Q9PTS9_Q9PTS9_CHICK_9031 and tr_A0A226N4J7_A0A226N4J7_CALSU_9009 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A2I3GBS5_A0A2I3GBS5_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_G1NX35_G1NX35_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A2I2YQR2_A0A2I2YQR2_GORGO_9595 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_H2QRC1_H2QRC1_PANTR_9598 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_W5Q417_W5Q417_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and sp_P70604_KCNN2_RAT_10116 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_H0WZZ6_H0WZZ6_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and sp_Q9H2S1_KCNN2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A1D5RE77_A0A1D5RE77_MACMU_9544 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_G3T695_G3T695_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_F7A5Q4_F7A5Q4_CALJA_9483 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_F1RLF9_F1RLF9_PIG_9823 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_G8F4J0_G8F4J0_MACFA_9541 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_F1MCH1_F1MCH1_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A096NRL2_A0A096NRL2_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A0D9RQV1_A0A0D9RQV1_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A1U7U8A1_A0A1U7U8A1_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A1U7QJZ6_A0A1U7QJZ6_MESAU_10036 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A2K5LF67_A0A2K5LF67_CERAT_9531 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A2K6ALJ7_A0A2K6ALJ7_MACNE_9545 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A2K5XA21_A0A2K5XA21_MANLE_9568 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A2R9CJ61_A0A2R9CJ61_PANPA_9597 are exactly identical! WARNING: Sequences sp_P58390_KCNN2_MOUSE_10090 and tr_A0A2Y9DM14_A0A2Y9DM14_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3XNV6_M3XNV6_MUSPF_9669 and tr_F1PA33_F1PA33_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XNV6_M3XNV6_MUSPF_9669 and tr_G1L1N3_G1L1N3_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XNV6_M3XNV6_MUSPF_9669 and tr_M3X7U2_M3X7U2_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XNV6_M3XNV6_MUSPF_9669 and tr_A0A2U3X3B4_A0A2U3X3B4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XNV6_M3XNV6_MUSPF_9669 and tr_A0A2U3YTL3_A0A2U3YTL3_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q7KVW5_KCNN_DROME_7227 and tr_B4I0P8_B4I0P8_DROSE_7238 are exactly identical! WARNING: Sequences tr_H2M279_H2M279_ORYLA_8090 and tr_M4ANR4_M4ANR4_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2M279_H2M279_ORYLA_8090 and tr_I3JGJ7_I3JGJ7_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2M279_H2M279_ORYLA_8090 and tr_A0A087Y9E8_A0A087Y9E8_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2M279_H2M279_ORYLA_8090 and tr_A0A2I4CRN6_A0A2I4CRN6_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2M279_H2M279_ORYLA_8090 and tr_A0A2U9AY47_A0A2U9AY47_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A2I3GPQ5_A0A2I3GPQ5_NOMLE_61853 and tr_H9FU72_H9FU72_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GPQ5_A0A2I3GPQ5_NOMLE_61853 and tr_A0A2I3LXE3_A0A2I3LXE3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GPQ5_A0A2I3GPQ5_NOMLE_61853 and tr_A0A2K5NZY0_A0A2K5NZY0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GPQ5_A0A2I3GPQ5_NOMLE_61853 and tr_A0A2K6BNV0_A0A2K6BNV0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RAN8_G3RAN8_GORGO_9595 and tr_H2QZI8_H2QZI8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RAN8_G3RAN8_GORGO_9595 and tr_F7ETY4_F7ETY4_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RAN8_G3RAN8_GORGO_9595 and tr_F7E5T3_F7E5T3_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3RAN8_G3RAN8_GORGO_9595 and tr_A0A1S3F1V3_A0A1S3F1V3_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G3RAN8_G3RAN8_GORGO_9595 and tr_A0A2K5MLQ0_A0A2K5MLQ0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RAN8_G3RAN8_GORGO_9595 and tr_A0A2K6A5Q8_A0A2K6A5Q8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3RAN8_G3RAN8_GORGO_9595 and tr_A0A2R9BUN9_A0A2R9BUN9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3TDT7_A0A2I3TDT7_PANTR_9598 and sp_Q92952_KCNN1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3TDT7_A0A2I3TDT7_PANTR_9598 and tr_A0A2R8ZVG7_A0A2R8ZVG7_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7BT53_K7BT53_PANTR_9598 and tr_A0A2R9AAT6_A0A2R9AAT6_PANPA_9597 are exactly identical! WARNING: Sequences sp_P70605_KCNN3_RAT_10116 and tr_A0A1U7QJI1_A0A1U7QJI1_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A3B5R121_A0A3B5R121_XIPMA_8083 and tr_A0A096M7B0_A0A096M7B0_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5R121_A0A3B5R121_XIPMA_8083 and tr_A0A2I4D7H8_A0A2I4D7H8_9TELE_52670 are exactly identical! WARNING: Sequences tr_H0UUD3_H0UUD3_CAVPO_10141 and tr_G5C1I7_G5C1I7_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9UGI6_KCNN3_HUMAN_9606 and tr_F1RGN0_F1RGN0_PIG_9823 are exactly identical! WARNING: Sequences sp_Q9UGI6_KCNN3_HUMAN_9606 and sp_P58392_KCNN3_PIG_9823 are exactly identical! WARNING: Sequences sp_Q9UGI6_KCNN3_HUMAN_9606 and tr_G7NUJ2_G7NUJ2_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q9UGI6_KCNN3_HUMAN_9606 and tr_E1BHB0_E1BHB0_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q9UGI6_KCNN3_HUMAN_9606 and tr_A0A0D9S5D1_A0A0D9S5D1_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9UGI6_KCNN3_HUMAN_9606 and tr_A0A2K6DX05_A0A2K6DX05_MACNE_9545 are exactly identical! WARNING: Sequences tr_K7GC18_K7GC18_PELSI_13735 and tr_U3JIX3_U3JIX3_FICAL_59894 are exactly identical! WARNING: Sequences tr_K7GC18_K7GC18_PELSI_13735 and tr_A0A093Q8D8_A0A093Q8D8_9PASS_328815 are exactly identical! WARNING: Sequences tr_K7GC18_K7GC18_PELSI_13735 and tr_A0A093I678_A0A093I678_STRCA_441894 are exactly identical! WARNING: Sequences tr_K7GC18_K7GC18_PELSI_13735 and tr_A0A093H4U6_A0A093H4U6_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G3PYT3_G3PYT3_GASAC_69293 and tr_A0A2U9CJZ5_A0A2U9CJZ5_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H0Z127_H0Z127_TAEGU_59729 and tr_U3JEV3_U3JEV3_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0Z127_H0Z127_TAEGU_59729 and tr_A0A091EFC5_A0A091EFC5_CORBR_85066 are exactly identical! WARNING: Sequences tr_A8WWA7_A8WWA7_CAEBR_6238 and tr_A0A2G5VE30_A0A2G5VE30_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A151NJZ0_A0A151NJZ0_ALLMI_8496 and tr_A0A3Q0FY16_A0A3Q0FY16_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091VEI6_A0A091VEI6_NIPNI_128390 and tr_A0A087RBJ5_A0A087RBJ5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VEI6_A0A091VEI6_NIPNI_128390 and tr_A0A099YWR0_A0A099YWR0_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091VEI6_A0A091VEI6_NIPNI_128390 and tr_A0A091IMC8_A0A091IMC8_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0V0RTU2_A0A0V0RTU2_9BILA_6336 and tr_A0A0V1L527_A0A0V1L527_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CSS3_A0A0V1CSS3_TRIBR_45882 and tr_A0A0V0VQS2_A0A0V0VQS2_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1D8Q2_A0A0V1D8Q2_TRIBR_45882 and tr_A0A0V0WHX4_A0A0V0WHX4_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1D8Q2_A0A0V1D8Q2_TRIBR_45882 and tr_A0A0V0ZMG1_A0A0V0ZMG1_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1D8Q2_A0A0V1D8Q2_TRIBR_45882 and tr_A0A0V1PB92_A0A0V1PB92_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1D8Q2_A0A0V1D8Q2_TRIBR_45882 and tr_A0A0V0UHH6_A0A0V0UHH6_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1AFU6_A0A0V1AFU6_9BILA_990121 and tr_A0A0V1PH76_A0A0V1PH76_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1AFU6_A0A0V1AFU6_9BILA_990121 and tr_A0A0V0TXL5_A0A0V0TXL5_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A195BLP0_A0A195BLP0_9HYME_520822 and tr_A0A195FX55_A0A195FX55_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A195BLP0_A0A195BLP0_9HYME_520822 and tr_A0A195CEH3_A0A195CEH3_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S3HTQ2_A0A1S3HTQ2_LINUN_7574 and tr_A0A1S3HWG1_A0A1S3HWG1_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1I7UKZ9_A0A1I7UKZ9_9PELO_1561998 and tr_A0A1I7UL00_A0A1I7UL00_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A1I7V347_A0A1I7V347_9PELO_1561998 and tr_A0A1I7V348_A0A1I7V348_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A1D1W861_A0A1D1W861_RAMVA_947166 and tr_A0A1D1W863_A0A1D1W863_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A1D1W861_A0A1D1W861_RAMVA_947166 and tr_A0A1D1W8A9_A0A1D1W8A9_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A1D1W861_A0A1D1W861_RAMVA_947166 and tr_A0A1D1WAI3_A0A1D1WAI3_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A2D0R2K6_A0A2D0R2K6_ICTPU_7998 and tr_A0A2D0R399_A0A2D0R399_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4BTC5_A0A2U4BTC5_TURTR_9739 and tr_A0A2Y9PLP7_A0A2Y9PLP7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BTC5_A0A2U4BTC5_TURTR_9739 and tr_A0A384AXQ0_A0A384AXQ0_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9F7Y0_A0A2Y9F7Y0_PHYCD_9755 and tr_A0A384B785_A0A384B785_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 91 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O15554/3_mltree/O15554.raxml.reduced.phy Alignment comprises 1 partitions and 403 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 403 / 403 Gaps: 13.01 % Invariant sites: 0.25 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O15554/3_mltree/O15554.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 2 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 597 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 202 / 16160 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -273902.113014] Initial branch length optimization [00:00:03 -208579.114999] Model parameter optimization (eps = 10.000000) [00:00:48 -207007.422736] AUTODETECT spr round 1 (radius: 5) [00:02:03 -156703.074673] AUTODETECT spr round 2 (radius: 10) [00:03:31 -119662.858699] AUTODETECT spr round 3 (radius: 15) [00:05:07 -90596.482434] AUTODETECT spr round 4 (radius: 20) [00:06:51 -86605.780114] AUTODETECT spr round 5 (radius: 25) [00:09:00 -82319.740242] SPR radius for FAST iterations: 25 (autodetect) [00:09:00 -82319.740242] Model parameter optimization (eps = 3.000000) [00:09:41 -81779.375706] FAST spr round 1 (radius: 25) [00:11:21 -67809.013607] FAST spr round 2 (radius: 25) [00:12:37 -67245.121917] FAST spr round 3 (radius: 25) [00:13:40 -67196.210027] FAST spr round 4 (radius: 25) [00:14:37 -67192.631409] FAST spr round 5 (radius: 25) [00:15:31 -67192.630837] Model parameter optimization (eps = 1.000000) [00:15:48 -67188.610908] SLOW spr round 1 (radius: 5) [00:17:01 -67166.249722] SLOW spr round 2 (radius: 5) [00:18:15 -67164.397591] SLOW spr round 3 (radius: 5) [00:19:26 -67164.381958] SLOW spr round 4 (radius: 10) [00:20:47 -67162.804551] SLOW spr round 5 (radius: 5) [00:22:20 -67162.802493] SLOW spr round 6 (radius: 10) [00:23:51 -67162.791294] SLOW spr round 7 (radius: 15) [00:25:54 -67162.791098] SLOW spr round 8 (radius: 20) [00:28:59 -67145.572689] SLOW spr round 9 (radius: 5) [00:30:42 -67145.222046] SLOW spr round 10 (radius: 5) [00:32:08 -67145.221871] SLOW spr round 11 (radius: 10) [00:33:36 -67145.221461] SLOW spr round 12 (radius: 15) [00:35:43 -67145.221455] SLOW spr round 13 (radius: 20) [00:38:44 -67145.221450] SLOW spr round 14 (radius: 25) [00:43:01 -67144.656705] SLOW spr round 15 (radius: 5) [00:44:43 -67144.656607] SLOW spr round 16 (radius: 10) [00:46:27 -67144.656587] SLOW spr round 17 (radius: 15) [00:48:31 -67144.656578] SLOW spr round 18 (radius: 20) [00:51:27] [worker #1] ML tree search #2, logLikelihood: -67124.868424 [00:51:27 -67144.656573] SLOW spr round 19 (radius: 25) [00:54:33] [worker #2] ML tree search #3, logLikelihood: -67148.383360 [00:55:27 -67144.656569] Model parameter optimization (eps = 0.100000) [00:55:37] [worker #0] ML tree search #1, logLikelihood: -67144.464598 [00:55:37 -271308.821154] Initial branch length optimization [00:55:39 -207360.321642] Model parameter optimization (eps = 10.000000) [00:56:18 -205819.509126] AUTODETECT spr round 1 (radius: 5) [00:57:32 -149812.671249] AUTODETECT spr round 2 (radius: 10) [00:58:57 -117977.412163] AUTODETECT spr round 3 (radius: 15) [01:00:33 -97761.925008] AUTODETECT spr round 4 (radius: 20) [01:02:25 -82396.246382] AUTODETECT spr round 5 (radius: 25) [01:04:28 -79921.802111] SPR radius for FAST iterations: 25 (autodetect) [01:04:28 -79921.802111] Model parameter optimization (eps = 3.000000) [01:05:01 -79465.317944] FAST spr round 1 (radius: 25) [01:06:41 -69004.853522] FAST spr round 2 (radius: 25) [01:08:00 -67657.002095] FAST spr round 3 (radius: 25) [01:09:07 -67165.814882] FAST spr round 4 (radius: 25) [01:10:06 -67163.984810] FAST spr round 5 (radius: 25) [01:11:01 -67163.984228] Model parameter optimization (eps = 1.000000) [01:11:13 -67157.559442] SLOW spr round 1 (radius: 5) [01:12:29 -67135.066086] SLOW spr round 2 (radius: 5) [01:13:44 -67132.495018] SLOW spr round 3 (radius: 5) [01:14:55 -67132.494903] SLOW spr round 4 (radius: 10) [01:16:17 -67127.789935] SLOW spr round 5 (radius: 5) [01:17:51 -67126.234358] SLOW spr round 6 (radius: 5) [01:19:11 -67126.234005] SLOW spr round 7 (radius: 10) [01:20:36 -67126.233845] SLOW spr round 8 (radius: 15) [01:22:44 -67125.736410] SLOW spr round 9 (radius: 5) [01:23:15] [worker #1] ML tree search #5, logLikelihood: -67146.492517 [01:24:24 -67125.736151] SLOW spr round 10 (radius: 10) [01:26:07 -67125.733001] SLOW spr round 11 (radius: 15) [01:28:12 -67125.732900] SLOW spr round 12 (radius: 20) [01:29:05] [worker #2] ML tree search #6, logLikelihood: -67127.649870 [01:31:29 -67125.732799] SLOW spr round 13 (radius: 25) [01:36:04 -67125.651075] Model parameter optimization (eps = 0.100000) [01:36:11] [worker #0] ML tree search #4, logLikelihood: -67125.502882 [01:36:11 -271051.564837] Initial branch length optimization [01:36:14 -208299.565361] Model parameter optimization (eps = 10.000000) [01:37:05 -206712.940549] AUTODETECT spr round 1 (radius: 5) [01:38:19 -152622.110874] AUTODETECT spr round 2 (radius: 10) [01:39:43 -123352.083278] AUTODETECT spr round 3 (radius: 15) [01:41:16 -96155.379912] AUTODETECT spr round 4 (radius: 20) [01:43:10 -83681.065689] AUTODETECT spr round 5 (radius: 25) [01:45:18 -80681.236122] SPR radius for FAST iterations: 25 (autodetect) [01:45:18 -80681.236122] Model parameter optimization (eps = 3.000000) [01:45:47 -80153.635995] FAST spr round 1 (radius: 25) [01:47:18 -68725.764630] FAST spr round 2 (radius: 25) [01:48:32 -67235.603951] FAST spr round 3 (radius: 25) [01:49:38 -67217.483457] FAST spr round 4 (radius: 25) [01:50:37 -67215.519174] FAST spr round 5 (radius: 25) [01:51:32 -67215.308854] FAST spr round 6 (radius: 25) [01:52:26 -67215.308704] Model parameter optimization (eps = 1.000000) [01:52:39 -67208.687213] SLOW spr round 1 (radius: 5) [01:53:55 -67185.094162] SLOW spr round 2 (radius: 5) [01:55:11 -67183.167330] SLOW spr round 3 (radius: 5) [01:55:53] [worker #1] ML tree search #8, logLikelihood: -67193.660148 [01:56:25 -67183.166676] SLOW spr round 4 (radius: 10) [01:57:48 -67179.917918] SLOW spr round 5 (radius: 5) [01:59:21 -67179.915155] SLOW spr round 6 (radius: 10) [02:00:55 -67179.914647] SLOW spr round 7 (radius: 15) [02:02:57 -67179.674321] SLOW spr round 8 (radius: 5) [02:04:37 -67176.295926] SLOW spr round 9 (radius: 5) [02:06:04 -67176.295532] SLOW spr round 10 (radius: 10) [02:07:32 -67176.295403] SLOW spr round 11 (radius: 15) [02:09:33 -67176.295352] SLOW spr round 12 (radius: 20) [02:11:30] [worker #2] ML tree search #9, logLikelihood: -67137.744828 [02:12:13 -67167.614642] SLOW spr round 13 (radius: 5) [02:13:56 -67159.099654] SLOW spr round 14 (radius: 5) [02:15:23 -67159.091247] SLOW spr round 15 (radius: 10) [02:16:51 -67159.090958] SLOW spr round 16 (radius: 15) [02:18:51 -67159.090958] SLOW spr round 17 (radius: 20) [02:21:29 -67158.905409] SLOW spr round 18 (radius: 5) [02:23:12 -67155.706907] SLOW spr round 19 (radius: 5) [02:24:39 -67152.639034] SLOW spr round 20 (radius: 5) [02:25:57 -67152.638984] SLOW spr round 21 (radius: 10) [02:27:20 -67152.638981] SLOW spr round 22 (radius: 15) [02:29:31 -67152.638969] SLOW spr round 23 (radius: 20) [02:32:50 -67152.557007] SLOW spr round 24 (radius: 25) [02:37:38 -67152.556980] Model parameter optimization (eps = 0.100000) [02:37:45] [worker #0] ML tree search #7, logLikelihood: -67152.317460 [02:37:45 -271436.950963] Initial branch length optimization [02:37:47 -207017.061201] Model parameter optimization (eps = 10.000000) [02:38:29 -205437.074662] AUTODETECT spr round 1 (radius: 5) [02:39:42 -148043.032646] AUTODETECT spr round 2 (radius: 10) [02:41:01 -120595.971674] AUTODETECT spr round 3 (radius: 15) [02:41:14] [worker #1] ML tree search #11, logLikelihood: -67145.608390 [02:42:30 -100403.854585] AUTODETECT spr round 4 (radius: 20) [02:44:23 -86277.169728] AUTODETECT spr round 5 (radius: 25) [02:46:27 -80885.174715] SPR radius for FAST iterations: 25 (autodetect) [02:46:27 -80885.174715] Model parameter optimization (eps = 3.000000) [02:47:14 -80506.031795] FAST spr round 1 (radius: 25) [02:48:48 -67702.803304] FAST spr round 2 (radius: 25) [02:50:02 -67358.340879] FAST spr round 3 (radius: 25) [02:51:07 -67328.021453] FAST spr round 4 (radius: 25) [02:52:07 -67323.968556] FAST spr round 5 (radius: 25) [02:53:01 -67321.129678] FAST spr round 6 (radius: 25) [02:53:21] [worker #2] ML tree search #12, logLikelihood: -67135.756486 [02:53:52 -67321.129561] Model parameter optimization (eps = 1.000000) [02:54:11 -67179.792765] SLOW spr round 1 (radius: 5) [02:55:27 -67158.798978] SLOW spr round 2 (radius: 5) [02:56:43 -67155.573477] SLOW spr round 3 (radius: 5) [02:57:59 -67154.205507] SLOW spr round 4 (radius: 5) [02:59:13 -67154.204810] SLOW spr round 5 (radius: 10) [03:00:39 -67145.268904] SLOW spr round 6 (radius: 5) [03:02:11 -67145.268124] SLOW spr round 7 (radius: 10) [03:03:46 -67142.133134] SLOW spr round 8 (radius: 5) [03:05:17 -67142.131019] SLOW spr round 9 (radius: 10) [03:06:51 -67142.130899] SLOW spr round 10 (radius: 15) [03:08:51 -67139.740001] SLOW spr round 11 (radius: 5) [03:10:29 -67139.739609] SLOW spr round 12 (radius: 10) [03:12:10 -67139.739498] SLOW spr round 13 (radius: 15) [03:14:09 -67139.739393] SLOW spr round 14 (radius: 20) [03:16:48 -67139.739286] SLOW spr round 15 (radius: 25) [03:20:38 -67135.104505] SLOW spr round 16 (radius: 5) [03:22:20 -67135.023955] SLOW spr round 17 (radius: 10) [03:24:06 -67135.023937] SLOW spr round 18 (radius: 15) [03:26:05 -67135.023929] SLOW spr round 19 (radius: 20) [03:27:24] [worker #1] ML tree search #14, logLikelihood: -67149.158478 [03:28:48 -67134.942597] SLOW spr round 20 (radius: 25) [03:32:39 -67134.942566] Model parameter optimization (eps = 0.100000) [03:32:45] [worker #0] ML tree search #10, logLikelihood: -67134.824903 [03:32:45 -270974.083226] Initial branch length optimization [03:32:48 -205957.030023] Model parameter optimization (eps = 10.000000) [03:33:03] [worker #2] ML tree search #15, logLikelihood: -67123.633470 [03:33:23 -204457.144134] AUTODETECT spr round 1 (radius: 5) [03:34:37 -149606.492391] AUTODETECT spr round 2 (radius: 10) [03:36:01 -111440.797722] AUTODETECT spr round 3 (radius: 15) [03:37:28 -97141.810527] AUTODETECT spr round 4 (radius: 20) [03:39:19 -82916.057897] AUTODETECT spr round 5 (radius: 25) [03:41:01 -79872.531488] SPR radius for FAST iterations: 25 (autodetect) [03:41:01 -79872.531488] Model parameter optimization (eps = 3.000000) [03:41:36 -79384.565416] FAST spr round 1 (radius: 25) [03:43:13 -67857.673870] FAST spr round 2 (radius: 25) [03:44:24 -67222.569653] FAST spr round 3 (radius: 25) [03:45:33 -67175.831113] FAST spr round 4 (radius: 25) [03:46:32 -67175.440643] FAST spr round 5 (radius: 25) [03:47:25 -67175.440310] Model parameter optimization (eps = 1.000000) [03:47:37 -67169.615636] SLOW spr round 1 (radius: 5) [03:48:52 -67147.830514] SLOW spr round 2 (radius: 5) [03:50:07 -67145.818159] SLOW spr round 3 (radius: 5) [03:51:18 -67145.817278] SLOW spr round 4 (radius: 10) [03:52:36 -67145.817034] SLOW spr round 5 (radius: 15) [03:54:45 -67144.475310] SLOW spr round 6 (radius: 5) [03:56:24 -67144.473022] SLOW spr round 7 (radius: 10) [03:58:03 -67144.472426] SLOW spr round 8 (radius: 15) [04:00:08 -67144.472236] SLOW spr round 9 (radius: 20) [04:03:11 -67144.000386] SLOW spr round 10 (radius: 5) [04:04:53 -67142.090106] SLOW spr round 11 (radius: 5) [04:06:20 -67142.089869] SLOW spr round 12 (radius: 10) [04:07:49 -67142.089732] SLOW spr round 13 (radius: 15) [04:09:57 -67142.089622] SLOW spr round 14 (radius: 20) [04:13:05 -67142.089520] SLOW spr round 15 (radius: 25) [04:17:02 -67142.007188] Model parameter optimization (eps = 0.100000) [04:17:07] [worker #0] ML tree search #13, logLikelihood: -67141.950711 [04:17:07 -270799.464068] Initial branch length optimization [04:17:10 -207252.005703] Model parameter optimization (eps = 10.000000) [04:17:55 -205615.543991] AUTODETECT spr round 1 (radius: 5) [04:19:07 -152874.919030] AUTODETECT spr round 2 (radius: 10) [04:20:32 -120577.279552] AUTODETECT spr round 3 (radius: 15) [04:22:06 -95553.014050] AUTODETECT spr round 4 (radius: 20) [04:23:53 -87316.335571] AUTODETECT spr round 5 (radius: 25) [04:25:55 -84797.880817] SPR radius for FAST iterations: 25 (autodetect) [04:25:55 -84797.880817] Model parameter optimization (eps = 3.000000) [04:26:26 -84289.651973] FAST spr round 1 (radius: 25) [04:27:56 -70752.979451] FAST spr round 2 (radius: 25) [04:29:07 -67520.344321] FAST spr round 3 (radius: 25) [04:30:11 -67201.719029] FAST spr round 4 (radius: 25) [04:31:11 -67185.572362] FAST spr round 5 (radius: 25) [04:32:09 -67177.848448] FAST spr round 6 (radius: 25) [04:32:37] [worker #2] ML tree search #18, logLikelihood: -67118.979647 [04:33:02 -67176.332068] FAST spr round 7 (radius: 25) [04:33:53 -67176.329496] Model parameter optimization (eps = 1.000000) [04:34:07 -67167.871775] SLOW spr round 1 (radius: 5) [04:35:18 -67151.778756] SLOW spr round 2 (radius: 5) [04:36:31 -67150.752217] SLOW spr round 3 (radius: 5) [04:37:46 -67148.325558] SLOW spr round 4 (radius: 5) [04:38:59 -67148.312955] SLOW spr round 5 (radius: 10) [04:40:23 -67142.406725] SLOW spr round 6 (radius: 5) [04:41:56 -67140.853910] SLOW spr round 7 (radius: 5) [04:43:18 -67140.852358] SLOW spr round 8 (radius: 10) [04:44:42 -67140.852047] SLOW spr round 9 (radius: 15) [04:46:59 -67136.544961] SLOW spr round 10 (radius: 5) [04:48:37 -67135.477313] SLOW spr round 11 (radius: 5) [04:50:01 -67135.477225] SLOW spr round 12 (radius: 10) [04:51:28 -67135.477183] SLOW spr round 13 (radius: 15) [04:52:29] [worker #1] ML tree search #17, logLikelihood: -67124.599243 [04:53:45 -67135.477183] SLOW spr round 14 (radius: 20) [04:57:17 -67134.674164] SLOW spr round 15 (radius: 5) [04:58:58 -67133.959692] SLOW spr round 16 (radius: 5) [05:00:24 -67133.959540] SLOW spr round 17 (radius: 10) [05:01:52 -67133.959537] SLOW spr round 18 (radius: 15) [05:04:01 -67133.959536] SLOW spr round 19 (radius: 20) [05:06:54 -67133.959536] SLOW spr round 20 (radius: 25) [05:10:28 -67133.959536] Model parameter optimization (eps = 0.100000) [05:10:38] [worker #0] ML tree search #16, logLikelihood: -67133.840207 [05:10:38 -273631.133554] Initial branch length optimization [05:10:41 -207307.596388] Model parameter optimization (eps = 10.000000) [05:11:15 -205673.818693] AUTODETECT spr round 1 (radius: 5) [05:12:29 -151764.109938] AUTODETECT spr round 2 (radius: 10) [05:13:52 -119671.833240] AUTODETECT spr round 3 (radius: 15) [05:15:22 -101784.835341] AUTODETECT spr round 4 (radius: 20) [05:17:12 -90970.888585] AUTODETECT spr round 5 (radius: 25) [05:19:00 -87391.143769] SPR radius for FAST iterations: 25 (autodetect) [05:19:00 -87391.143769] Model parameter optimization (eps = 3.000000) [05:19:29 -86994.791963] FAST spr round 1 (radius: 25) [05:21:14 -69479.151487] FAST spr round 2 (radius: 25) [05:22:39 -67373.719051] FAST spr round 3 (radius: 25) [05:23:44 -67320.984752] FAST spr round 4 (radius: 25) [05:24:42 -67317.502794] FAST spr round 5 (radius: 25) [05:25:36 -67316.359973] FAST spr round 6 (radius: 25) [05:26:28 -67316.356718] Model parameter optimization (eps = 1.000000) [05:26:46 -67184.858357] SLOW spr round 1 (radius: 5) [05:28:02 -67163.748731] SLOW spr round 2 (radius: 5) [05:29:16 -67158.063183] SLOW spr round 3 (radius: 5) [05:30:29 -67158.060888] SLOW spr round 4 (radius: 10) [05:31:50 -67156.790680] SLOW spr round 5 (radius: 5) [05:33:22 -67156.041018] SLOW spr round 6 (radius: 5) [05:34:43 -67156.040365] SLOW spr round 7 (radius: 10) [05:36:08 -67156.040035] SLOW spr round 8 (radius: 15) [05:38:18 -67156.039882] SLOW spr round 9 (radius: 20) [05:38:49] [worker #1] ML tree search #20, logLikelihood: -67142.309890 [05:41:38 -67155.957949] SLOW spr round 10 (radius: 25) [05:46:05 -67125.845513] SLOW spr round 11 (radius: 5) [05:47:46 -67124.680161] SLOW spr round 12 (radius: 5) [05:49:12 -67124.679183] SLOW spr round 13 (radius: 10) [05:50:40 -67124.678987] SLOW spr round 14 (radius: 15) [05:52:47 -67124.678898] SLOW spr round 15 (radius: 20) [05:56:07 -67124.678832] SLOW spr round 16 (radius: 25) [06:00:33 -67124.678771] Model parameter optimization (eps = 0.100000) [06:00:38] [worker #0] ML tree search #19, logLikelihood: -67124.653880 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.225124,0.504248) (0.188480,1.360063) (0.445588,0.715519) (0.140808,2.210883) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -67118.979647 AIC score: 136631.959294 / AICc score: 3004643.959294 / BIC score: 141418.686358 Free parameters (model + branch lengths): 1197 WARNING: Number of free parameters (K=1197) is larger than alignment size (n=403). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O15554/3_mltree/O15554.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O15554/3_mltree/O15554.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O15554/3_mltree/O15554.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O15554/3_mltree/O15554.raxml.log Analysis started: 08-Jul-2021 07:02:31 / finished: 08-Jul-2021 13:03:09 Elapsed time: 21638.442 seconds