RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:34:21 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O15178/2_msa/O15178_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O15178/3_mltree/O15178.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O15178/4_raxmlng_ancestral/O15178 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622648061 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O15178/2_msa/O15178_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 435 sites WARNING: Sequences tr_F1P3K1_F1P3K1_CHICK_9031 and tr_G1N6R8_G1N6R8_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q9PWE8_TBX5_CHICK_9031 and tr_G1NCF9_G1NCF9_MELGA_9103 are exactly identical! WARNING: Sequences sp_P70325_TBX4_MOUSE_10090 and tr_D4A0A2_D4A0A2_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XN95_M3XN95_MUSPF_9669 and tr_I3NBE7_I3NBE7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XN95_M3XN95_MUSPF_9669 and tr_E1BK81_E1BK81_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XN95_M3XN95_MUSPF_9669 and tr_A0A337SM91_A0A337SM91_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XN95_M3XN95_MUSPF_9669 and tr_A0A1S3G5C7_A0A1S3G5C7_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3XN95_M3XN95_MUSPF_9669 and tr_A0A2U4AAP3_A0A2U4AAP3_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3XN95_M3XN95_MUSPF_9669 and tr_A0A2U3WMK7_A0A2U3WMK7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XN95_M3XN95_MUSPF_9669 and tr_A0A2U3XX11_A0A2U3XX11_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XN95_M3XN95_MUSPF_9669 and tr_A0A2Y9DJA9_A0A2Y9DJA9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3XN95_M3XN95_MUSPF_9669 and tr_A0A2Y9J853_A0A2Y9J853_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XN95_M3XN95_MUSPF_9669 and tr_A0A2Y9N8K5_A0A2Y9N8K5_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XN95_M3XN95_MUSPF_9669 and tr_A0A2Y9SP41_A0A2Y9SP41_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XUD7_M3XUD7_MUSPF_9669 and tr_A0A2Y9KP97_A0A2Y9KP97_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y1V6_M3Y1V6_MUSPF_9669 and tr_E2R062_E2R062_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y1V6_M3Y1V6_MUSPF_9669 and tr_L5JMX5_L5JMX5_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Y1V6_M3Y1V6_MUSPF_9669 and tr_A0A2U3WH23_A0A2U3WH23_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y1V6_M3Y1V6_MUSPF_9669 and tr_A0A2U3XDT3_A0A2U3XDT3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y900_M3Y900_MUSPF_9669 and tr_A0A2Y9JDR6_A0A2Y9JDR6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_H2PMD8_H2PMD8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_H2QUF0_H2QUF0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and sp_Q9UMR3_TBX20_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_F7E831_F7E831_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_F7HNF6_F7HNF6_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_G7P0F2_G7P0F2_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_A0A096N256_A0A096N256_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_A0A0D9RR04_A0A0D9RR04_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_A0A1U7TSS3_A0A1U7TSS3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_A0A2K5NJX0_A0A2K5NJX0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_A0A2K5XI87_A0A2K5XI87_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RQM8_G1RQM8_NOMLE_61853 and tr_H2PJQ4_H2PJQ4_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RQM8_G1RQM8_NOMLE_61853 and tr_H2QTC7_H2QTC7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RQM8_G1RQM8_NOMLE_61853 and sp_O95935_TBX18_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RQM8_G1RQM8_NOMLE_61853 and tr_F7CBI6_F7CBI6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RQM8_G1RQM8_NOMLE_61853 and tr_A0A096NF47_A0A096NF47_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RQM8_G1RQM8_NOMLE_61853 and tr_A0A2K5LXF7_A0A2K5LXF7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RQM8_G1RQM8_NOMLE_61853 and tr_A0A2K6BJK6_A0A2K6BJK6_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RQM8_G1RQM8_NOMLE_61853 and tr_A0A2R9A1N2_A0A2R9A1N2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3I5G4_G3I5G4_CRIGR_10029 and tr_A0A0G2KAH3_A0A0G2KAH3_RAT_10116 are exactly identical! WARNING: Sequences tr_G3I5G4_G3I5G4_CRIGR_10029 and tr_A0A1U7QGM5_A0A1U7QGM5_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2K5TIZ6_A0A2K5TIZ6_GORGO_9595 and sp_A1YF56_TBX6_GORGO_9595 are exactly identical! WARNING: Sequences tr_G3QG71_G3QG71_GORGO_9595 and tr_A0A2I3RJU5_A0A2I3RJU5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QG71_G3QG71_GORGO_9595 and sp_O60806_TBX19_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QG71_G3QG71_GORGO_9595 and tr_A0A2R9AKY2_A0A2R9AKY2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QXI2_G3QXI2_GORGO_9595 and tr_H2QU10_H2QU10_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QXI2_G3QXI2_GORGO_9595 and tr_A0A2R9A9Z3_A0A2R9A9Z3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and tr_A0A2J8XKH3_A0A2J8XKH3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and tr_H2Q6Y5_H2Q6Y5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and sp_Q99593_TBX5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and tr_F7FPV2_F7FPV2_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and tr_F7I9Q2_F7I9Q2_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and tr_A0A2I3M7F5_A0A2I3M7F5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and tr_A0A0D9S4A3_A0A0D9S4A3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and tr_A0A2K5LIE8_A0A2K5LIE8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and tr_A0A2K6C115_A0A2K6C115_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and tr_A0A2R9A5H2_A0A2R9A5H2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RS35_G3RS35_GORGO_9595 and tr_H2P7N0_H2P7N0_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RS35_G3RS35_GORGO_9595 and tr_H2R3Y6_H2R3Y6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RS35_G3RS35_GORGO_9595 and sp_Q16650_TBR1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RS35_G3RS35_GORGO_9595 and tr_F6UNF8_F6UNF8_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3RS35_G3RS35_GORGO_9595 and tr_A0A096MY32_A0A096MY32_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RS35_G3RS35_GORGO_9595 and tr_A0A0D9RT01_A0A0D9RT01_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RS35_G3RS35_GORGO_9595 and tr_A0A2K5LMC7_A0A2K5LMC7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RS35_G3RS35_GORGO_9595 and tr_A0A2K6BDW0_A0A2K6BDW0_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2NV87_H2NV87_PONAB_9601 and tr_H2QDL4_H2QDL4_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2NV87_H2NV87_PONAB_9601 and sp_P57082_TBX4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NV87_H2NV87_PONAB_9601 and tr_A0A2R9BRB8_A0A2R9BRB8_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q29F61_Q29F61_DROPS_46245 and tr_B4HB13_B4HB13_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2QDL3_H2QDL3_PANTR_9598 and sp_Q13207_TBX2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_O15119_TBX3_HUMAN_9606 and tr_A0A2K5MT14_A0A2K5MT14_CERAT_9531 are exactly identical! WARNING: Sequences sp_O15119_TBX3_HUMAN_9606 and tr_A0A2K6ARE0_A0A2K6ARE0_MACNE_9545 are exactly identical! WARNING: Sequences sp_O15119_TBX3_HUMAN_9606 and tr_A0A2K5XDI3_A0A2K5XDI3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6ZEH2_F6ZEH2_MACMU_9544 and tr_A0A096P4Y5_A0A096P4Y5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6ZEH2_F6ZEH2_MACMU_9544 and tr_A0A2K6BSZ7_A0A2K6BSZ7_MACNE_9545 are exactly identical! WARNING: Sequences tr_B3S6C1_B3S6C1_TRIAD_10228 and tr_A0A369SLS1_A0A369SLS1_9METZ_287889 are exactly identical! WARNING: Sequences tr_U3JPF3_U3JPF3_FICAL_59894 and tr_A0A218VAX7_A0A218VAX7_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3JZC9_U3JZC9_FICAL_59894 and tr_A0A218V2P6_A0A218V2P6_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A096NHQ7_A0A096NHQ7_PAPAN_9555 and tr_A0A2K5KIE3_A0A2K5KIE3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NHQ7_A0A096NHQ7_PAPAN_9555 and tr_A0A2K5YX76_A0A2K5YX76_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151N4K8_A0A151N4K8_ALLMI_8496 and tr_A0A3Q0FNC3_A0A3Q0FNC3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P2D7_A0A151P2D7_ALLMI_8496 and tr_A0A1U7RIZ4_A0A1U7RIZ4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0V1D342_A0A0V1D342_TRIBR_45882 and tr_A0A0V0WIN9_A0A0V0WIN9_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1D342_A0A0V1D342_TRIBR_45882 and tr_A0A0V0VGY9_A0A0V0VGY9_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1D342_A0A0V1D342_TRIBR_45882 and tr_A0A0V1L6A2_A0A0V1L6A2_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1D342_A0A0V1D342_TRIBR_45882 and tr_A0A0V1NSI6_A0A0V1NSI6_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1D342_A0A0V1D342_TRIBR_45882 and tr_A0A0V0TYX1_A0A0V0TYX1_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1M7L7_A0A0V1M7L7_9BILA_268474 and tr_A0A0V1H9W2_A0A0V1H9W2_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A151IXY8_A0A151IXY8_9HYME_471704 and tr_A0A195F3M1_A0A195F3M1_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A226MNG5_A0A226MNG5_CALSU_9009 and tr_A0A226P9A9_A0A226P9A9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MV22_A0A226MV22_CALSU_9009 and tr_A0A226PUW7_A0A226PUW7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NBM1_A0A226NBM1_CALSU_9009 and tr_A0A226PG36_A0A226PG36_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0QC04_A0A2D0QC04_ICTPU_7998 and tr_A0A2D0QD34_A0A2D0QD34_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5N1Q1_A0A2K5N1Q1_CERAT_9531 and tr_A0A2K5XXF9_A0A2K5XXF9_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3X3N1_A0A2U3X3N1_ODORO_9708 and tr_A0A2U3XRT2_A0A2U3XRT2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9LAN0_A0A2Y9LAN0_DELLE_9749 and tr_A0A2Y9ELR5_A0A2Y9ELR5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9LAN0_A0A2Y9LAN0_DELLE_9749 and tr_A0A383Z6Y0_A0A383Z6Y0_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 97 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O15178/4_raxmlng_ancestral/O15178.raxml.reduced.phy Alignment comprises 1 partitions and 435 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 435 Gaps: 27.30 % Invariant sites: 0.92 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O15178/4_raxmlng_ancestral/O15178.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O15178/3_mltree/O15178.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 109 / 8720 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -176475.262991 [00:00:00 -176475.262991] Initial branch length optimization [00:00:01 -131250.616162] Model parameter optimization (eps = 0.100000) [00:00:56] Tree #1, final logLikelihood: -130998.744273 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.099232,0.079030) (0.153706,0.198565) (0.223630,0.450171) (0.523432,1.644846) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O15178/4_raxmlng_ancestral/O15178.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O15178/4_raxmlng_ancestral/O15178.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O15178/4_raxmlng_ancestral/O15178.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O15178/4_raxmlng_ancestral/O15178.raxml.log Analysis started: 02-Jun-2021 18:34:21 / finished: 02-Jun-2021 18:35:22 Elapsed time: 60.802 seconds Consumed energy: 4.025 Wh