RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 03-Jul-2021 15:04:56 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O14672/2_msa/O14672_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O14672/3_mltree/O14672 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O14672/2_msa/O14672_trimmed_msa.fasta [00:00:00] Loaded alignment with 728 taxa and 17 sites WARNING: Sequences tr_B4R0X7_B4R0X7_DROSI_7240 and tr_B5DXC1_B5DXC1_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4R0X7_B4R0X7_DROSI_7240 and tr_B4GNG8_B4GNG8_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4R0X7_B4R0X7_DROSI_7240 and tr_B4KC41_B4KC41_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_E9FVI8_E9FVI8_DAPPU_6669 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_E2ALI0_E2ALI0_CAMFO_104421 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_W5J4Y7_W5J4Y7_ANODA_43151 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_Q9VJW9_Q9VJW9_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_B4JP66_B4JP66_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_B4IEP3_B4IEP3_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_Q29PB0_Q29PB0_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_B0XCG2_B0XCG2_CULQU_7176 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_K7IXP2_K7IXP2_NASVI_7425 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A088AEU3_A0A088AEU3_APIME_7460 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A158NMT0_A0A158NMT0_ATTCE_12957 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_Q7Q858_Q7Q858_ANOGA_7165 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_D7EI66_D7EI66_TRICA_7070 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_F4X616_F4X616_ACREC_103372 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_B4N0C3_B4N0C3_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_B3MV38_B3MV38_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_X1WN16_X1WN16_ACYPI_7029 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_E2C9I4_E2C9I4_HARSA_610380 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_B4GKF5_B4GKF5_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_B4M9R4_B4M9R4_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_Q17HJ1_Q17HJ1_AEDAE_7159 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_E0VKA6_E0VKA6_PEDHC_121224 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_B4KIQ6_B4KIQ6_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_T1GCF9_T1GCF9_MEGSC_36166 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_T1HTV9_T1HTV9_RHOPR_13249 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A067RM49_A0A067RM49_ZOONE_136037 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_U4UII6_U4UII6_DENPD_77166 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A084VMU0_A0A084VMU0_ANOSI_74873 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A0L0BWK1_A0A0L0BWK1_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A026W111_A0A026W111_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A0M8ZUE1_A0A0M8ZUE1_9HYME_166423 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A0L7R4G4_A0A0L7R4G4_9HYME_597456 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A087UIB9_A0A087UIB9_9ARAC_407821 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A151WUP5_A0A151WUP5_9HYME_64791 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A154PKT9_A0A154PKT9_9HYME_178035 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A164N9E2_A0A164N9E2_9CRUS_35525 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A151IY61_A0A151IY61_9HYME_471704 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A151I1J0_A0A151I1J0_9HYME_520822 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A151JZS3_A0A151JZS3_9HYME_34720 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A195C5Q6_A0A195C5Q6_9HYME_456900 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A3Q0JGH7_A0A3Q0JGH7_DIACI_121845 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A0M4E5S4_A0A0M4E5S4_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A1D2N3Q8_A0A1D2N3Q8_ORCCI_48709 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A1J1I5P2_A0A1J1I5P2_9DIPT_568069 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A1D1V856_A0A1D1V856_RAMVA_947166 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A1W4UV01_A0A1W4UV01_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A1W4WQ48_A0A1W4WQ48_AGRPL_224129 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A2J7RAJ7_A0A2J7RAJ7_9NEOP_105785 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A2A3E2M2_A0A2A3E2M2_APICC_94128 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A2A3E396_A0A2A3E396_APICC_94128 are exactly identical! WARNING: Sequences tr_B4R447_B4R447_DROSI_7240 and tr_A0A2P8Z1A2_A0A2P8Z1A2_BLAGE_6973 are exactly identical! WARNING: Sequences tr_E9G3K5_E9G3K5_DAPPU_6669 and tr_G1R4Q3_G1R4Q3_NOMLE_61853 are exactly identical! WARNING: Sequences tr_E9G3K5_E9G3K5_DAPPU_6669 and tr_W6NC60_W6NC60_HAECO_6289 are exactly identical! WARNING: Sequences tr_E9G3K5_E9G3K5_DAPPU_6669 and tr_A0A0B2WKU5_A0A0B2WKU5_METAS_1081103 are exactly identical! WARNING: Sequences tr_E9G3K5_E9G3K5_DAPPU_6669 and tr_A0A1S3FVC9_A0A1S3FVC9_DIPOR_10020 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_E2A4P9_E2A4P9_CAMFO_104421 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_K7IQR5_K7IQR5_NASVI_7425 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A088A4X6_A0A088A4X6_APIME_7460 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_H9IZ14_H9IZ14_BOMMO_7091 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A158NZA8_A0A158NZA8_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A212F1F9_A0A212F1F9_DANPL_278856 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A139WMP5_A0A139WMP5_TRICA_7070 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_F4W9W1_F4W9W1_ACREC_103372 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_X1WIU2_X1WIU2_ACYPI_7029 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_E2BL04_E2BL04_HARSA_610380 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A067R253_A0A067R253_ZOONE_136037 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_U4U5N3_U4U5N3_DENPD_77166 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A084VZG8_A0A084VZG8_ANOSI_74873 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A026WCC3_A0A026WCC3_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A194RMH0_A0A194RMH0_PAPMA_76193 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A194QHI6_A0A194QHI6_PAPXU_66420 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A0L7RH70_A0A0L7RH70_9HYME_597456 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A151WKJ7_A0A151WKJ7_9HYME_64791 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A154P278_A0A154P278_9HYME_178035 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A154P918_A0A154P918_9HYME_178035 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A162D6J4_A0A162D6J4_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A195BRC2_A0A195BRC2_9HYME_520822 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A195EY41_A0A195EY41_9HYME_34720 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A151IKA0_A0A151IKA0_9HYME_456900 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A3Q0J2M7_A0A3Q0J2M7_DIACI_121845 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A1W4WMP9_A0A1W4WMP9_AGRPL_224129 are exactly identical! WARNING: Sequences tr_E9G8Q9_E9G8Q9_DAPPU_6669 and tr_A0A2J7QIS3_A0A2J7QIS3_9NEOP_105785 are exactly identical! WARNING: Sequences tr_E9H0Q2_E9H0Q2_DAPPU_6669 and tr_A0A162QEG4_A0A162QEG4_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A158NXT6_A0A158NXT6_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_F4X4B8_F4X4B8_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A084VDV0_A0A084VDV0_ANOSI_74873 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A0N8K2X4_A0A0N8K2X4_9TELE_113540 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A026W9B0_A0A026W9B0_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A0N0BD37_A0A0N0BD37_9HYME_166423 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A0L7QKT2_A0A0L7QKT2_9HYME_597456 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A151WQZ7_A0A151WQZ7_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A195E4G7_A0A195E4G7_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A195BQR3_A0A195BQR3_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A195FHM2_A0A195FHM2_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A151IGS4_A0A151IGS4_9HYME_456900 are exactly identical! WARNING: Sequences tr_E2AS55_E2AS55_CAMFO_104421 and tr_A0A2J7QKF8_A0A2J7QKF8_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A1L1RU47_A0A1L1RU47_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_G1N1F6_G1N1F6_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_H9GLT3_H9GLT3_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_M4AJ33_M4AJ33_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_H3CVB6_H3CVB6_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_H3D861_H3D861_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_H0Z6T0_H0Z6T0_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_F6QEN9_F6QEN9_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_H3AFX9_H3AFX9_LATCH_7897 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_U3KCP0_U3KCP0_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_U3J1P1_U3J1P1_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_W5KYN7_W5KYN7_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_W5N829_W5N829_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A087Y808_A0A087Y808_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A0N8K0E9_A0A0N8K0E9_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A151MAB5_A0A151MAB5_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A0Q3XB91_A0A0Q3XB91_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A091E9T4_A0A091E9T4_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A091JHV0_A0A091JHV0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A093QHX0_A0A093QHX0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A091VG81_A0A091VG81_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A087R465_A0A087R465_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A093HPY8_A0A093HPY8_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A091WCY2_A0A091WCY2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A099Z3M4_A0A099Z3M4_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A091FVS8_A0A091FVS8_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A0A0AJ23_A0A0A0AJ23_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A2I0M6R4_A0A2I0M6R4_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A093G9L9_A0A093G9L9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A091IMN8_A0A091IMN8_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A1S3KUJ8_A0A1S3KUJ8_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A1S3PTW7_A0A1S3PTW7_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A1L8GT16_A0A1L8GT16_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A1L8H0D0_A0A1L8H0D0_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A1U7RU18_A0A1U7RU18_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A1V4JDK4_A0A1V4JDK4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A060YYZ5_A0A060YYZ5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A218UNH7_A0A218UNH7_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A226MY35_A0A226MY35_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_A0A226PJW2_A0A226PJW2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A0R4IDF3_A0A0R4IDF3_DANRE_7955 and tr_W5UL14_W5UL14_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_F1NYC6_F1NYC6_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_G3HDL3_G3HDL3_CRIGR_10029 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_G1N8Q6_G1N8Q6_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_G1NGS8_G1NGS8_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_F6RFV5_F6RFV5_ORNAN_9258 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_F6ZF10_F6ZF10_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_F6SM09_F6SM09_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_W5QBJ1_W5QBJ1_SHEEP_9940 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A3B5Q3N1_A0A3B5Q3N1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_M4ADW7_M4ADW7_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_H0V1V7_H0V1V7_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_G5BE49_G5BE49_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_K7GGM9_K7GGM9_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_H3CY08_H3CY08_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_G3P523_G3P523_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_F6S5J8_F6S5J8_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_H3A5V9_H3A5V9_LATCH_7897 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_U3IC64_U3IC64_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A3B1IS65_A0A3B1IS65_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_W5L7V6_W5L7V6_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A087YBG5_A0A087YBG5_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A0P7X0N5_A0A0P7X0N5_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A0P7XY94_A0A0P7XY94_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A151NA05_A0A151NA05_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A091ETG9_A0A091ETG9_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A099Z5U0_A0A099Z5U0_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A1S3N6U6_A0A1S3N6U6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A1L8EPT4_A0A1L8EPT4_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A3Q0H432_A0A3Q0H432_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A1V4L1D3_A0A1V4L1D3_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2R8Q0T5_A0A2R8Q0T5_DANRE_7955 and tr_A0A218UU31_A0A218UU31_9PASE_299123 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_G3UV39_G3UV39_MELGA_9103 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_F6XXM6_F6XXM6_ORNAN_9258 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_I3JPG5_I3JPG5_ORENI_8128 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_H3CCP2_H3CCP2_TETNG_99883 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_B3SAV6_B3SAV6_TRIAD_10228 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A0P7Y2D1_A0A0P7Y2D1_9TELE_113540 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A0Q3M2J1_A0A0Q3M2J1_AMAAE_12930 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A087QQ31_A0A087QQ31_APTFO_9233 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A1U7UFV4_A0A1U7UFV4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A2I4AMZ0_A0A2I4AMZ0_9TELE_52670 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A226M9Z2_A0A226M9Z2_CALSU_9009 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A226MM23_A0A226MM23_CALSU_9009 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A226NJS0_A0A226NJS0_CALSU_9009 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A226P469_A0A226P469_COLVI_9014 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A226PZE3_A0A226PZE3_COLVI_9014 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A2R9BY87_A0A2R9BY87_PANPA_9597 are exactly identical! WARNING: Sequences tr_E7F494_E7F494_DANRE_7955 and tr_A0A2U9AY63_A0A2U9AY63_SCOMX_52904 are exactly identical! WARNING: Sequences tr_F1Q5U0_F1Q5U0_DANRE_7955 and tr_A0A2D0RUS0_A0A2D0RUS0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1L1RY97_A0A1L1RY97_CHICK_9031 and tr_A0A3B5R1I9_A0A3B5R1I9_XIPMA_8083 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_M3XZ41_M3XZ41_MUSPF_9669 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_H2LKY0_H2LKY0_ORYLA_8090 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2I3G1N0_A0A2I3G1N0_NOMLE_61853 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_G1P5A3_G1P5A3_MYOLU_59463 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_G3GRM2_G3GRM2_CRIGR_10029 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_G3R524_G3R524_GORGO_9595 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_Q5R6E8_Q5R6E8_PONAB_9601 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_G1TAQ9_G1TAQ9_RABIT_9986 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_F1PGR0_F1PGR0_CANLF_9615 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_H2Q9I4_H2Q9I4_PANTR_9598 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_F7EK00_F7EK00_ORNAN_9258 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_F6U6V3_F6U6V3_HORSE_9796 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_W5QI60_W5QI60_SHEEP_9940 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and sp_Q10743_ADA10_RAT_10116 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_I3LWW9_I3LWW9_ICTTR_43179 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_H2V8Q3_H2V8Q3_TAKRU_31033 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_H0VH24_H0VH24_CAVPO_10141 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and sp_O14672_ADA10_HUMAN_9606 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_H9EQI5_H9EQI5_MACMU_9544 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_G5B127_G5B127_HETGA_10181 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2R8M5F2_A0A2R8M5F2_CALJA_9483 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_G1L8N2_G1L8N2_AILME_9646 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_G7PBK2_G7PBK2_MACFA_9541 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and sp_Q10741_ADA10_BOVIN_9913 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_L5K4K0_L5K4K0_PTEAL_9402 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2I2UWI1_A0A2I2UWI1_FELCA_9685 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_T1EFW2_T1EFW2_HELRO_6412 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A096NM77_A0A096NM77_PAPAN_9555 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A091D6B9_A0A091D6B9_FUKDA_885580 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A0D9RHS5_A0A0D9RHS5_CHLSB_60711 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A1S3EM08_A0A1S3EM08_DIPOR_10020 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A1U7SZX4_A0A1U7SZX4_TARSY_1868482 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A1U7QBJ3_A0A1U7QBJ3_MESAU_10036 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2K5NHF3_A0A2K5NHF3_CERAT_9531 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2K6DJ04_A0A2K6DJ04_MACNE_9545 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2K6AJL3_A0A2K6AJL3_MANLE_9568 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2R9C3C4_A0A2R9C3C4_PANPA_9597 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2U4CBD7_A0A2U4CBD7_TURTR_9739 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2U3WE84_A0A2U3WE84_ODORO_9708 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2U3XXU3_A0A2U3XXU3_LEPWE_9713 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2Y9R1I8_A0A2Y9R1I8_TRIMA_127582 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2Y9K358_A0A2Y9K358_ENHLU_391180 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2Y9NR06_A0A2Y9NR06_DELLE_9749 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A2Y9F6A0_A0A2Y9F6A0_PHYCD_9755 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A384DBW0_A0A384DBW0_URSMA_29073 are exactly identical! WARNING: Sequences sp_O35598_ADA10_MOUSE_10090 and tr_A0A383YTW5_A0A383YTW5_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q60813_ADM1A_MOUSE_10090 and tr_G3H286_G3H286_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q9R158_AD26A_MOUSE_10090 and tr_F6X6S3_F6X6S3_ORNAN_9258 are exactly identical! WARNING: Sequences tr_W5JMM6_W5JMM6_ANODA_43151 and tr_Q7QI04_Q7QI04_ANOGA_7165 are exactly identical! WARNING: Sequences tr_W5JMM6_W5JMM6_ANODA_43151 and tr_K9FUA8_K9FUA8_PEND2_1170229 are exactly identical! WARNING: Sequences tr_W5JMM6_W5JMM6_ANODA_43151 and tr_S9W4J7_S9W4J7_SCHCR_653667 are exactly identical! WARNING: Sequences tr_W5JMM6_W5JMM6_ANODA_43151 and tr_A0A084VLD8_A0A084VLD8_ANOSI_74873 are exactly identical! WARNING: Sequences tr_W5JMM6_W5JMM6_ANODA_43151 and tr_A0A0M8P6S7_A0A0M8P6S7_9EURO_229535 are exactly identical! WARNING: Sequences tr_W5JMM6_W5JMM6_ANODA_43151 and tr_A0A2W1DC43_A0A2W1DC43_9PLEO_45151 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_B4JYM1_B4JYM1_DROGR_7222 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_B4HZD6_B4HZD6_DROSE_7238 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_Q29BU0_Q29BU0_DROPS_46245 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_B0XDB5_B0XDB5_CULQU_7176 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_Q7PQR0_Q7PQR0_ANOGA_7165 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_B4NBK6_B4NBK6_DROWI_7260 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_B3MTH8_B3MTH8_DROAN_7217 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_B4GPN3_B4GPN3_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_B4M5S6_B4M5S6_DROVI_7244 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_Q17BS9_Q17BS9_AEDAE_7159 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_B4K607_B4K607_DROMO_7230 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_T1H0N7_T1H0N7_MEGSC_36166 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_T1HCD6_T1HCD6_RHOPR_13249 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_A0A0L0CGM2_A0A0L0CGM2_LUCCU_7375 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_A0A195EDN9_A0A195EDN9_9HYME_471704 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_A0A1J1HQQ4_A0A1J1HQQ4_9DIPT_568069 are exactly identical! WARNING: Sequences tr_Q9VAI2_Q9VAI2_DROME_7227 and tr_A0A1W4UCG4_A0A1W4UCG4_DROFC_30025 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_M3ZWN2_M3ZWN2_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_I3JEQ8_I3JEQ8_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_H2T9T6_H2T9T6_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_G3NS02_G3NS02_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_G3PTD9_G3PTD9_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_A0A3B1ITR0_A0A3B1ITR0_ASTMX_7994 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_A0A087XFP3_A0A087XFP3_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_V4CI89_V4CI89_LOTGI_225164 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_A0A0P7ZBZ4_A0A0P7ZBZ4_9TELE_113540 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_A0A1S3KT49_A0A1S3KT49_SALSA_8030 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_A0A1S3PDR0_A0A1S3PDR0_SALSA_8030 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_A0A2I4CAE2_A0A2I4CAE2_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_A0A060YL67_A0A060YL67_ONCMY_8022 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_W5UF80_W5UF80_ICTPU_7998 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_A0A2U9BCC1_A0A2U9BCC1_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2LW33_H2LW33_ORYLA_8090 and tr_A0A2U9BXT9_A0A2U9BXT9_SCOMX_52904 are exactly identical! WARNING: Sequences tr_G1QVP6_G1QVP6_NOMLE_61853 and tr_H9G7L1_H9G7L1_ANOCA_28377 are exactly identical! WARNING: Sequences tr_G1QVP6_G1QVP6_NOMLE_61853 and tr_K7F8Q6_K7F8Q6_PELSI_13735 are exactly identical! WARNING: Sequences tr_G1QVP6_G1QVP6_NOMLE_61853 and tr_H3B5U6_H3B5U6_LATCH_7897 are exactly identical! WARNING: Sequences tr_G1QVP6_G1QVP6_NOMLE_61853 and tr_A0A0P7W2L5_A0A0P7W2L5_9TELE_113540 are exactly identical! WARNING: Sequences tr_G1QVP6_G1QVP6_NOMLE_61853 and tr_A0A060YTH6_A0A060YTH6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_C3Z0K2_C3Z0K2_BRAFL_7739 and tr_K1PX12_K1PX12_CRAGI_29159 are exactly identical! WARNING: Sequences tr_C3Z0K2_C3Z0K2_BRAFL_7739 and tr_K1PZ19_K1PZ19_CRAGI_29159 are exactly identical! WARNING: Sequences tr_C3Z0K2_C3Z0K2_BRAFL_7739 and tr_A0A1S3H064_A0A1S3H064_LINUN_7574 are exactly identical! WARNING: Sequences tr_B7PB66_B7PB66_IXOSC_6945 and tr_T1IUZ6_T1IUZ6_STRMM_126957 are exactly identical! WARNING: Sequences tr_B7PB66_B7PB66_IXOSC_6945 and tr_T1L1V0_T1L1V0_TETUR_32264 are exactly identical! WARNING: Sequences tr_B7PN91_B7PN91_IXOSC_6945 and tr_W4ZL80_W4ZL80_STRPU_7668 are exactly identical! WARNING: Sequences tr_B7PN91_B7PN91_IXOSC_6945 and tr_K7FQJ4_K7FQJ4_PELSI_13735 are exactly identical! WARNING: Sequences tr_B7PN91_B7PN91_IXOSC_6945 and tr_T1IZL7_T1IZL7_STRMM_126957 are exactly identical! WARNING: Sequences tr_B7PN91_B7PN91_IXOSC_6945 and tr_A0A0L0F0F8_A0A0L0F0F8_9EUKA_667725 are exactly identical! WARNING: Sequences tr_A7SGQ0_A7SGQ0_NEMVE_45351 and tr_B3SAV4_B3SAV4_TRIAD_10228 are exactly identical! WARNING: Sequences tr_H2NIP7_H2NIP7_PONAB_9601 and tr_A0A2I3RQS1_A0A2I3RQS1_PANTR_9598 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_C1GVV2_C1GVV2_PARBA_502779 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_E4V1E7_E4V1E7_ARTGP_535722 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_H1UUY5_H1UUY5_COLHI_759273 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A6QW95_A6QW95_AJECN_339724 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_T1J8C7_T1J8C7_STRMM_126957 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_N1Q2R4_N1Q2R4_DOTSN_675120 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A0K8L689_A0A0K8L689_9EURO_91492 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A0S7E0L7_A0A0S7E0L7_9EURO_293939 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A165A4Q4_A0A165A4Q4_9PEZI_1328760 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A1B7NMS6_A0A1B7NMS6_9EURO_1658172 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A1E3B583_A0A1E3B583_9EURO_573508 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A1J9P855_A0A1J9P855_9EURO_1447872 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A1L9V5K5_A0A1L9V5K5_ASPGL_1160497 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A1R3R856_A0A1R3R856_ASPC5_602072 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A1V6TAC9_A0A1V6TAC9_9EURO_303698 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A2B7Z2E5_A0A2B7Z2E5_9EURO_1447883 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A2B7ZUG4_A0A2B7ZUG4_9EURO_73230 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A2G5I9A4_A0A2G5I9A4_CERBT_122368 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A2I1C4Y5_A0A2I1C4Y5_9EURO_1392255 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A2I0RKA6_A0A2I0RKA6_9PEZI_348901 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A2S6C2D9_A0A2S6C2D9_9PEZI_357750 are exactly identical! WARNING: Sequences tr_C1G403_C1G403_PARBD_502780 and tr_A0A317WZ31_A0A317WZ31_9EURO_1450535 are exactly identical! WARNING: Sequences tr_G1T2M2_G1T2M2_RABIT_9986 and tr_I3MK49_I3MK49_ICTTR_43179 are exactly identical! WARNING: Sequences sp_G5EFD9_ADA10_CAEEL_6239 and tr_A0A2H2IAH3_A0A2H2IAH3_CAEJA_281687 are exactly identical! WARNING: Sequences sp_G5EFD9_ADA10_CAEEL_6239 and tr_A8XF96_A8XF96_CAEBR_6238 are exactly identical! WARNING: Sequences sp_G5EFD9_ADA10_CAEEL_6239 and tr_A0A2G5VJC9_A0A2G5VJC9_9PELO_1611254 are exactly identical! WARNING: Sequences tr_C1DYF0_C1DYF0_MICCC_296587 and tr_A0A0L0SZV7_A0A0L0SZV7_ALLMA_578462 are exactly identical! WARNING: Sequences tr_F7AXI6_F7AXI6_ORNAN_9258 and tr_G3WFT8_G3WFT8_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7E763_F7E763_ORNAN_9258 and tr_F7E503_F7E503_XENTR_8364 are exactly identical! WARNING: Sequences tr_F7E763_F7E763_ORNAN_9258 and tr_A0A091F9L4_A0A091F9L4_CORBR_85066 are exactly identical! WARNING: Sequences tr_F7E763_F7E763_ORNAN_9258 and tr_A0A093QIX8_A0A093QIX8_9PASS_328815 are exactly identical! WARNING: Sequences tr_F7E763_F7E763_ORNAN_9258 and tr_A0A2I0MUP1_A0A2I0MUP1_COLLI_8932 are exactly identical! WARNING: Sequences tr_F7E763_F7E763_ORNAN_9258 and tr_Q2V730_Q2V730_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7E763_F7E763_ORNAN_9258 and tr_A0A3Q0G178_A0A3Q0G178_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F7E763_F7E763_ORNAN_9258 and tr_A0A226NAE2_A0A226NAE2_COLVI_9014 are exactly identical! WARNING: Sequences tr_F7GE03_F7GE03_ORNAN_9258 and tr_A0A151P0C5_A0A151P0C5_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F7GE03_F7GE03_ORNAN_9258 and tr_A0A3Q0FYB5_A0A3Q0FYB5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F6PTE7_F6PTE7_MONDO_13616 and tr_H0WPQ2_H0WPQ2_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F6PTE7_F6PTE7_MONDO_13616 and tr_K7FVQ5_K7FVQ5_PELSI_13735 are exactly identical! WARNING: Sequences tr_F6PTE7_F6PTE7_MONDO_13616 and tr_G3SSK9_G3SSK9_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F6PTE7_F6PTE7_MONDO_13616 and tr_G3VMU4_G3VMU4_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6PTE7_F6PTE7_MONDO_13616 and sp_O77633_ADA10_PIG_9823 are exactly identical! WARNING: Sequences tr_F6PTE7_F6PTE7_MONDO_13616 and tr_A0A1S3AEJ5_A0A1S3AEJ5_ERIEU_9365 are exactly identical! WARNING: Sequences tr_F7D753_F7D753_HORSE_9796 and tr_A0A2U4CJW1_A0A2U4CJW1_TURTR_9739 are exactly identical! WARNING: Sequences tr_F7D753_F7D753_HORSE_9796 and tr_A0A2Y9LAE8_A0A2Y9LAE8_DELLE_9749 are exactly identical! WARNING: Sequences tr_F7D753_F7D753_HORSE_9796 and tr_A0A383ZD38_A0A383ZD38_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5P3S1_W5P3S1_SHEEP_9940 and tr_W5P3V3_W5P3V3_SHEEP_9940 are exactly identical! WARNING: Sequences tr_W5PQY9_W5PQY9_SHEEP_9940 and tr_A0A2U3X1T4_A0A2U3X1T4_ODORO_9708 are exactly identical! WARNING: Sequences tr_W5PQY9_W5PQY9_SHEEP_9940 and tr_A0A2U3YXQ4_A0A2U3YXQ4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_W5PQY9_W5PQY9_SHEEP_9940 and tr_A0A384BGB2_A0A384BGB2_BALAS_310752 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_E9F8R7_E9F8R7_METRA_655844 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_E9E764_E9E764_METAQ_655827 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_E9R9I7_E9R9I7_ASPFU_330879 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A1DPF2_A1DPF2_NEOFI_331117 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_G9MM52_G9MM52_HYPVG_413071 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A044UA18_A0A044UA18_ONCVO_6282 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A016SNT5_A0A016SNT5_9BILA_53326 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A0B4HS02_A0A0B4HS02_METMF_1276143 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A0K8LJV1_A0A0K8LJV1_9EURO_91492 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A0N4T8S3_A0A0N4T8S3_BRUPA_6280 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A0R3Q3T6_A0A0R3Q3T6_9BILA_42155 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A0S7DJ34_A0A0S7DJ34_9EURO_293939 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A0F4YIW6_A0A0F4YIW6_TALEM_1408163 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A0D9NMS4_A0A0D9NMS4_METAN_1291518 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A182E1T8_A0A182E1T8_ONCOC_42157 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A397HLT3_A0A397HLT3_9EURO_41047 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A2I1CBB8_A0A2I1CBB8_9EURO_1392255 are exactly identical! WARNING: Sequences sp_O13766_MDE10_SCHPO_284812 and tr_A0A210PMZ6_A0A210PMZ6_MIZYE_6573 are exactly identical! WARNING: Sequences tr_A0A088AFB3_A0A088AFB3_APIME_7460 and tr_A0A0N0BES5_A0A0N0BES5_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A088AFB3_A0A088AFB3_APIME_7460 and tr_A0A2A3EUT1_A0A2A3EUT1_APICC_94128 are exactly identical! WARNING: Sequences tr_H9IVZ7_H9IVZ7_BOMMO_7091 and tr_A0A212ERJ3_A0A212ERJ3_DANPL_278856 are exactly identical! WARNING: Sequences tr_H9IYZ5_H9IYZ5_BOMMO_7091 and tr_A0A212FPG3_A0A212FPG3_DANPL_278856 are exactly identical! WARNING: Sequences tr_H9IYZ5_H9IYZ5_BOMMO_7091 and tr_A0A0L7KU71_A0A0L7KU71_9NEOP_104452 are exactly identical! WARNING: Sequences tr_H9IYZ5_H9IYZ5_BOMMO_7091 and tr_A0A194QBN5_A0A194QBN5_PAPXU_66420 are exactly identical! WARNING: Sequences tr_H9IYZ5_H9IYZ5_BOMMO_7091 and tr_A0A2A4J0F7_A0A2A4J0F7_HELVI_7102 are exactly identical! WARNING: Sequences tr_K1Q2H4_K1Q2H4_CRAGI_29159 and tr_K1QZ15_K1QZ15_CRAGI_29159 are exactly identical! WARNING: Sequences tr_K1QXL4_K1QXL4_CRAGI_29159 and tr_K1RD88_K1RD88_CRAGI_29159 are exactly identical! WARNING: Sequences tr_H0VH53_H0VH53_CAVPO_10141 and sp_Q60472_ADAM5_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A1P6BWI6_A0A1P6BWI6_BRUMA_6279 and tr_A0A044UGX7_A0A044UGX7_ONCVO_6282 are exactly identical! WARNING: Sequences tr_A0A1P6BWI6_A0A1P6BWI6_BRUMA_6279 and tr_A0A158PST9_A0A158PST9_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A1P6BWI6_A0A1P6BWI6_BRUMA_6279 and tr_A0A158Q778_A0A158Q778_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A1P6BWI6_A0A1P6BWI6_BRUMA_6279 and tr_A0A183I0S7_A0A183I0S7_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A1P6BWI6_A0A1P6BWI6_BRUMA_6279 and tr_A0A182E7I2_A0A182E7I2_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A1P6BWI6_A0A1P6BWI6_BRUMA_6279 and tr_A0A1I7VE51_A0A1I7VE51_LOALO_7209 are exactly identical! WARNING: Sequences tr_E5S176_E5S176_TRISP_6334 and tr_A0A0V0Y6U1_A0A0V0Y6U1_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SUV4_E5SUV4_TRISP_6334 and tr_A0A0V0RKI1_A0A0V0RKI1_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SUV4_E5SUV4_TRISP_6334 and tr_A0A0V1CUE6_A0A0V1CUE6_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SUV4_E5SUV4_TRISP_6334 and tr_A0A0V0WL52_A0A0V0WL52_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SUV4_E5SUV4_TRISP_6334 and tr_A0A0V0VM27_A0A0V0VM27_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SUV4_E5SUV4_TRISP_6334 and tr_A0A0V1KXW3_A0A0V1KXW3_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SUV4_E5SUV4_TRISP_6334 and tr_A0A0V0ZHY8_A0A0V0ZHY8_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SUV4_E5SUV4_TRISP_6334 and tr_A0A0V0XPU3_A0A0V0XPU3_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SUV4_E5SUV4_TRISP_6334 and tr_A0A0V1MIC9_A0A0V1MIC9_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SUV4_E5SUV4_TRISP_6334 and tr_A0A0V1P0S0_A0A0V1P0S0_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SUV4_E5SUV4_TRISP_6334 and tr_A0A0V1H556_A0A0V1H556_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5SUV4_E5SUV4_TRISP_6334 and tr_A0A0V0THQ6_A0A0V0THQ6_9BILA_144512 are exactly identical! WARNING: Sequences tr_W4YFI6_W4YFI6_STRPU_7668 and tr_W4YQU0_W4YQU0_STRPU_7668 are exactly identical! WARNING: Sequences tr_H3DDF0_H3DDF0_TETNG_99883 and tr_F7CRK3_F7CRK3_XENTR_8364 are exactly identical! WARNING: Sequences tr_H3DDF0_H3DDF0_TETNG_99883 and tr_A0A1L8HN44_A0A1L8HN44_XENLA_8355 are exactly identical! WARNING: Sequences tr_G3TY53_G3TY53_LOXAF_9785 and tr_A0A2Y9DS14_A0A2Y9DS14_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3UBQ8_G3UBQ8_LOXAF_9785 and tr_A0A2K5NMQ5_A0A2K5NMQ5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3UBQ8_G3UBQ8_LOXAF_9785 and tr_A0A2K5NMZ7_A0A2K5NMZ7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1X7ST77_A0A1X7ST77_AMPQE_400682 and tr_A0A1X7UAN2_A0A1X7UAN2_AMPQE_400682 are exactly identical! WARNING: Sequences tr_G0NUW7_G0NUW7_CAEBE_135651 and tr_G0PKK9_G0PKK9_CAEBE_135651 are exactly identical! WARNING: Sequences tr_G0NUW7_G0NUW7_CAEBE_135651 and tr_E3LVM0_E3LVM0_CAERE_31234 are exactly identical! WARNING: Sequences tr_G0NUW7_G0NUW7_CAEBE_135651 and tr_A0A1I7UY89_A0A1I7UY89_9PELO_1561998 are exactly identical! WARNING: Sequences tr_G0NUW7_G0NUW7_CAEBE_135651 and tr_A0A261CDI1_A0A261CDI1_9PELO_1503980 are exactly identical! WARNING: Sequences tr_B3RJM6_B3RJM6_TRIAD_10228 and tr_A0A087U358_A0A087U358_9ARAC_407821 are exactly identical! WARNING: Sequences tr_B3RJM6_B3RJM6_TRIAD_10228 and tr_A0A369S7J2_A0A369S7J2_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3RL71_B3RL71_TRIAD_10228 and tr_A0A369SER2_A0A369SER2_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3RMA9_B3RMA9_TRIAD_10228 and tr_A0A369RV51_A0A369RV51_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3SAV3_B3SAV3_TRIAD_10228 and tr_A0A369RP58_A0A369RP58_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3SAV3_B3SAV3_TRIAD_10228 and tr_A0A369RUH1_A0A369RUH1_9METZ_287889 are exactly identical! WARNING: Sequences tr_M7SBJ7_M7SBJ7_EUTLA_1287681 and tr_A0A084QQB9_A0A084QQB9_STAC4_1283841 are exactly identical! WARNING: Sequences tr_M7SBJ7_M7SBJ7_EUTLA_1287681 and tr_A0A084R623_A0A084R623_STACH_1283842 are exactly identical! WARNING: Sequences tr_U3ICD1_U3ICD1_ANAPL_8839 and tr_A0A226MDV6_A0A226MDV6_CALSU_9009 are exactly identical! WARNING: Sequences tr_U3IEH4_U3IEH4_ANAPL_8839 and tr_A0A087QGP7_A0A087QGP7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A016UHN8_A0A016UHN8_9BILA_53326 and tr_A0A0K0CUD4_A0A0K0CUD4_ANGCA_6313 are exactly identical! WARNING: Sequences tr_A0A016UHN8_A0A016UHN8_9BILA_53326 and tr_A0A2A2LB89_A0A2A2LB89_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A096N0C0_A0A096N0C0_PAPAN_9555 and tr_A0A2K5XVS7_A0A2K5XVS7_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A091CVD1_A0A091CVD1_FUKDA_885580 and tr_A0A091CZ90_A0A091CZ90_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A0K0F4A7_A0A0K0F4A7_STRVS_75913 and tr_A0A0K0E9T7_A0A0K0E9T7_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0F4A7_A0A0K0F4A7_STRVS_75913 and tr_A0A090L931_A0A090L931_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0K0F4A7_A0A0K0F4A7_STRVS_75913 and tr_A0A0N4Z735_A0A0N4Z735_PARTI_131310 are exactly identical! WARNING: Sequences tr_A0A0K0F4A7_A0A0K0F4A7_STRVS_75913 and tr_A0A0N5BZL3_A0A0N5BZL3_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0L7KQV1_A0A0L7KQV1_9NEOP_104452 and tr_A0A194RNA2_A0A194RNA2_PAPMA_76193 are exactly identical! WARNING: Sequences tr_A0A0N4T3W8_A0A0N4T3W8_BRUPA_6280 and tr_A0A182EFD4_A0A182EFD4_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A158RE77_A0A158RE77_HYDTA_6205 and tr_A0A0R3VTZ9_A0A0R3VTZ9_TAEAS_60517 are exactly identical! WARNING: Sequences tr_A0A151MW55_A0A151MW55_ALLMI_8496 and tr_A0A1S3IY28_A0A1S3IY28_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A151MW55_A0A151MW55_ALLMI_8496 and tr_A0A1S3JZS9_A0A1S3JZS9_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A151MW55_A0A151MW55_ALLMI_8496 and tr_A0A1S3JZT0_A0A1S3JZT0_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A087QI51_A0A087QI51_APTFO_9233 and tr_A0A099Z7U6_A0A099Z7U6_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A087QZM7_A0A087QZM7_APTFO_9233 and tr_A0A093I822_A0A093I822_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2I0M2M3_A0A2I0M2M3_COLLI_8932 and tr_A0A2I0M8N5_A0A2I0M8N5_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A151WMX2_A0A151WMX2_9HYME_64791 and tr_A0A195BFG0_A0A195BFG0_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A151WMX2_A0A151WMX2_9HYME_64791 and tr_A0A2J7RJU9_A0A2J7RJU9_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A151WMX2_A0A151WMX2_9HYME_64791 and tr_A0A2A3EBN5_A0A2A3EBN5_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A3Q0IVV7_A0A3Q0IVV7_DIACI_121845 and tr_A0A1D1UI13_A0A1D1UI13_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A1S3IN75_A0A1S3IN75_LINUN_7574 and tr_A0A1Y1Y287_A0A1Y1Y287_9FUNG_1314790 are exactly identical! WARNING: Sequences tr_A0A1S3IN75_A0A1S3IN75_LINUN_7574 and tr_A0A2G5B4W5_A0A2G5B4W5_COERN_763665 are exactly identical! WARNING: Sequences tr_A0A1S3LJ27_A0A1S3LJ27_SALSA_8030 and tr_A0A060YDP0_A0A060YDP0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MLP8_A0A1S3MLP8_SALSA_8030 and tr_A0A2I4BPL5_A0A2I4BPL5_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A1S3MLP8_A0A1S3MLP8_SALSA_8030 and tr_A0A060VSV0_A0A060VSV0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MLP8_A0A1S3MLP8_SALSA_8030 and tr_A0A2U9C364_A0A2U9C364_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A1S3P0B2_A0A1S3P0B2_SALSA_8030 and tr_A0A1S3PM83_A0A1S3PM83_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3P0B2_A0A1S3P0B2_SALSA_8030 and tr_A0A060WWU5_A0A060WWU5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3P0B2_A0A1S3P0B2_SALSA_8030 and tr_A0A060Z453_A0A060Z453_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1D1UDR5_A0A1D1UDR5_RAMVA_947166 and tr_A0A1D1UHE2_A0A1D1UHE2_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A1D1UDR5_A0A1D1UDR5_RAMVA_947166 and tr_A0A1D1UP36_A0A1D1UP36_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A1V6Q2C3_A0A1V6Q2C3_9EURO_416450 and tr_A0A2I2FVW4_A0A2I2FVW4_9EURO_1392250 are exactly identical! WARNING: Sequences tr_A0A2K6AD08_A0A2K6AD08_MANLE_9568 and tr_A0A2R9A1V7_A0A2R9A1V7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2N5SNV4_A0A2N5SNV4_9BASI_200324 and tr_A0A2N5V5Z3_A0A2N5V5Z3_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2U3WW40_A0A2U3WW40_ODORO_9708 and tr_A0A2U3XE51_A0A2U3XE51_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3WW40_A0A2U3WW40_ODORO_9708 and tr_A0A2Y9K3K7_A0A2Y9K3K7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2U3Z9S4_A0A2U3Z9S4_ODORO_9708 and tr_A0A2U3XK91_A0A2U3XK91_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 448 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O14672/3_mltree/O14672.raxml.reduced.phy Alignment comprises 1 partitions and 17 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 17 / 17 Gaps: 1.96 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O14672/3_mltree/O14672.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 728 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 17 / 1360 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -8252.370307] Initial branch length optimization [00:00:00 -6785.214218] Model parameter optimization (eps = 10.000000) [00:00:10 -6645.773168] AUTODETECT spr round 1 (radius: 5) [00:00:36 -4669.741891] AUTODETECT spr round 2 (radius: 10) [00:01:06 -3218.321686] AUTODETECT spr round 3 (radius: 15) [00:01:39 -2642.961721] AUTODETECT spr round 4 (radius: 20) [00:02:14 -2518.947975] AUTODETECT spr round 5 (radius: 25) [00:02:49 -2399.830846] SPR radius for FAST iterations: 25 (autodetect) [00:02:49 -2399.830846] Model parameter optimization (eps = 3.000000) [00:02:54 -2395.551324] FAST spr round 1 (radius: 25) [00:03:24 -2185.992315] FAST spr round 2 (radius: 25) [00:03:53 -2162.503400] FAST spr round 3 (radius: 25) [00:04:22 -2161.635107] FAST spr round 4 (radius: 25) [00:04:50 -2161.602920] Model parameter optimization (eps = 1.000000) [00:04:52 -2161.398129] SLOW spr round 1 (radius: 5) [00:05:23 -2160.844254] SLOW spr round 2 (radius: 5) [00:05:52 -2160.577069] SLOW spr round 3 (radius: 5) [00:06:22 -2160.577065] SLOW spr round 4 (radius: 10) [00:06:53 -2156.989137] SLOW spr round 5 (radius: 5) [00:07:24 -2156.989130] SLOW spr round 6 (radius: 10) [00:07:54 -2156.989129] SLOW spr round 7 (radius: 15) [00:08:28 -2154.027046] SLOW spr round 8 (radius: 5) [00:09:00 -2153.035357] SLOW spr round 9 (radius: 5) [00:09:30 -2153.035356] SLOW spr round 10 (radius: 10) [00:10:01 -2152.522311] SLOW spr round 11 (radius: 5) [00:10:32 -2152.522309] SLOW spr round 12 (radius: 10) [00:11:02 -2152.522309] SLOW spr round 13 (radius: 15) [00:11:35 -2141.129088] SLOW spr round 14 (radius: 5) [00:12:07 -2139.745293] SLOW spr round 15 (radius: 5) [00:12:37 -2139.744581] SLOW spr round 16 (radius: 10) [00:13:07 -2139.744554] SLOW spr round 17 (radius: 15) [00:13:41 -2139.744552] SLOW spr round 18 (radius: 20) [00:14:22 -2130.893265] SLOW spr round 19 (radius: 5) [00:14:55 -2130.761078] SLOW spr round 20 (radius: 5) [00:15:25 -2130.760890] SLOW spr round 21 (radius: 10) [00:15:56 -2129.989474] SLOW spr round 22 (radius: 5) [00:16:26 -2129.989473] SLOW spr round 23 (radius: 10) [00:16:56 -2129.989473] SLOW spr round 24 (radius: 15) [00:17:30 -2116.065234] SLOW spr round 25 (radius: 5) [00:18:01 -2116.056315] SLOW spr round 26 (radius: 10) [00:18:32 -2115.903222] SLOW spr round 27 (radius: 5) [00:19:02 -2115.903221] SLOW spr round 28 (radius: 10) [00:19:33 -2115.115699] SLOW spr round 29 (radius: 5) [00:20:03 -2115.115698] SLOW spr round 30 (radius: 10) [00:20:34 -2115.115697] SLOW spr round 31 (radius: 15) [00:21:07 -2114.700964] SLOW spr round 32 (radius: 5) [00:21:39 -2114.700931] SLOW spr round 33 (radius: 10) [00:22:09 -2114.700930] SLOW spr round 34 (radius: 15) [00:22:42 -2114.700930] SLOW spr round 35 (radius: 20) [00:23:21 -2100.919870] SLOW spr round 36 (radius: 5) [00:23:55 -2097.991677] SLOW spr round 37 (radius: 5) [00:24:25 -2097.991671] SLOW spr round 38 (radius: 10) [00:24:55 -2097.991670] SLOW spr round 39 (radius: 15) [00:25:27 -2097.991670] SLOW spr round 40 (radius: 20) [00:26:05 -2097.991669] SLOW spr round 41 (radius: 25) [00:26:51 -2093.145847] SLOW spr round 42 (radius: 5) [00:27:24 -2093.145790] SLOW spr round 43 (radius: 10) [00:27:54 -2092.903194] SLOW spr round 44 (radius: 5) [00:28:24 -2092.899847] SLOW spr round 45 (radius: 10) [00:28:55 -2092.899846] SLOW spr round 46 (radius: 15) [00:29:28 -2091.612415] SLOW spr round 47 (radius: 5) [00:30:01 -2091.408587] SLOW spr round 48 (radius: 5) [00:30:33 -2091.408020] SLOW spr round 49 (radius: 10) [00:31:05 -2091.408015] SLOW spr round 50 (radius: 15) [00:31:40 -2091.408015] SLOW spr round 51 (radius: 20) [00:32:20 -2091.408014] SLOW spr round 52 (radius: 25) [00:33:08 -2047.019019] SLOW spr round 53 (radius: 5) [00:33:44 -2042.383693] SLOW spr round 54 (radius: 5) [00:34:15 -2042.383675] SLOW spr round 55 (radius: 10) [00:34:47 -2042.383674] SLOW spr round 56 (radius: 15) [00:35:21 -2042.383673] SLOW spr round 57 (radius: 20) [00:36:02 -2042.383672] SLOW spr round 58 (radius: 25) [00:36:48 -2042.383672] Model parameter optimization (eps = 0.100000) [00:36:52] ML tree search #1, logLikelihood: -2042.142521 [00:36:52 -8241.008248] Initial branch length optimization [00:36:52 -6785.941800] Model parameter optimization (eps = 10.000000) [00:37:00 -6641.384350] AUTODETECT spr round 1 (radius: 5) [00:37:27 -4707.687589] AUTODETECT spr round 2 (radius: 10) [00:37:58 -3486.929324] AUTODETECT spr round 3 (radius: 15) [00:38:32 -2881.196976] AUTODETECT spr round 4 (radius: 20) [00:39:07 -2536.237893] AUTODETECT spr round 5 (radius: 25) [00:39:45 -2450.051864] SPR radius for FAST iterations: 25 (autodetect) [00:39:45 -2450.051864] Model parameter optimization (eps = 3.000000) [00:39:50 -2445.436345] FAST spr round 1 (radius: 25) [00:40:21 -2192.937117] FAST spr round 2 (radius: 25) [00:40:51 -2146.969125] FAST spr round 3 (radius: 25) [00:41:21 -2137.316580] FAST spr round 4 (radius: 25) [00:41:50 -2137.315109] Model parameter optimization (eps = 1.000000) [00:41:52 -2137.177751] SLOW spr round 1 (radius: 5) [00:42:23 -2136.282709] SLOW spr round 2 (radius: 5) [00:42:54 -2135.369091] SLOW spr round 3 (radius: 5) [00:43:24 -2135.369077] SLOW spr round 4 (radius: 10) [00:43:56 -2121.211769] SLOW spr round 5 (radius: 5) [00:44:28 -2120.238574] SLOW spr round 6 (radius: 5) [00:44:59 -2120.238573] SLOW spr round 7 (radius: 10) [00:45:31 -2120.081830] SLOW spr round 8 (radius: 5) [00:46:03 -2120.081828] SLOW spr round 9 (radius: 10) [00:46:35 -2120.081828] SLOW spr round 10 (radius: 15) [00:47:09 -2104.045060] SLOW spr round 11 (radius: 5) [00:47:42 -2099.524305] SLOW spr round 12 (radius: 5) [00:48:14 -2099.524305] SLOW spr round 13 (radius: 10) [00:48:46 -2099.524304] SLOW spr round 14 (radius: 15) [00:49:19 -2095.259888] SLOW spr round 15 (radius: 5) [00:49:52 -2094.337082] SLOW spr round 16 (radius: 5) [00:50:23 -2094.337080] SLOW spr round 17 (radius: 10) [00:50:54 -2094.337080] SLOW spr round 18 (radius: 15) [00:51:28 -2094.337080] SLOW spr round 19 (radius: 20) [00:52:05 -2075.818437] SLOW spr round 20 (radius: 5) [00:52:39 -2075.818415] SLOW spr round 21 (radius: 10) [00:53:10 -2075.328268] SLOW spr round 22 (radius: 5) [00:53:41 -2075.328268] SLOW spr round 23 (radius: 10) [00:54:12 -2075.328268] SLOW spr round 24 (radius: 15) [00:54:45 -2075.328268] SLOW spr round 25 (radius: 20) [00:55:22 -2074.790073] SLOW spr round 26 (radius: 5) [00:55:57 -2074.790068] SLOW spr round 27 (radius: 10) [00:56:29 -2074.790068] SLOW spr round 28 (radius: 15) [00:57:03 -2074.790068] SLOW spr round 29 (radius: 20) [00:57:43 -2074.790068] SLOW spr round 30 (radius: 25) [00:58:28 -2058.656277] SLOW spr round 31 (radius: 5) [00:59:03 -2057.489218] SLOW spr round 32 (radius: 5) [00:59:35 -2057.489209] SLOW spr round 33 (radius: 10) [01:00:07 -2056.623160] SLOW spr round 34 (radius: 5) [01:00:38 -2056.623155] SLOW spr round 35 (radius: 10) [01:01:10 -2056.623155] SLOW spr round 36 (radius: 15) [01:01:44 -2056.623155] SLOW spr round 37 (radius: 20) [01:02:23 -2056.616498] SLOW spr round 38 (radius: 25) [01:03:06 -2056.157531] SLOW spr round 39 (radius: 5) [01:03:41 -2056.157529] SLOW spr round 40 (radius: 10) [01:04:12 -2056.157529] SLOW spr round 41 (radius: 15) [01:04:46 -2056.157529] SLOW spr round 42 (radius: 20) [01:05:25 -2056.157529] SLOW spr round 43 (radius: 25) [01:06:08 -2056.157529] Model parameter optimization (eps = 0.100000) [01:06:10] ML tree search #2, logLikelihood: -2056.105593 [01:06:10 -8257.464490] Initial branch length optimization [01:06:10 -6816.053694] Model parameter optimization (eps = 10.000000) [01:06:19 -6680.421746] AUTODETECT spr round 1 (radius: 5) [01:06:46 -4748.291635] AUTODETECT spr round 2 (radius: 10) [01:07:17 -3514.340016] AUTODETECT spr round 3 (radius: 15) [01:07:51 -2740.078641] AUTODETECT spr round 4 (radius: 20) [01:08:26 -2516.558498] AUTODETECT spr round 5 (radius: 25) [01:09:03 -2410.186037] SPR radius for FAST iterations: 25 (autodetect) [01:09:03 -2410.186037] Model parameter optimization (eps = 3.000000) [01:09:08 -2406.325823] FAST spr round 1 (radius: 25) [01:09:39 -2108.040902] FAST spr round 2 (radius: 25) [01:10:09 -2104.737792] FAST spr round 3 (radius: 25) [01:10:39 -2104.737560] Model parameter optimization (eps = 1.000000) [01:10:41 -2104.505972] SLOW spr round 1 (radius: 5) [01:11:13 -2102.205347] SLOW spr round 2 (radius: 5) [01:11:44 -2102.205270] SLOW spr round 3 (radius: 10) [01:12:16 -2093.951241] SLOW spr round 4 (radius: 5) [01:12:48 -2093.463235] SLOW spr round 5 (radius: 5) [01:13:19 -2093.462578] SLOW spr round 6 (radius: 10) [01:13:51 -2091.945389] SLOW spr round 7 (radius: 5) [01:14:22 -2091.945388] SLOW spr round 8 (radius: 10) [01:14:55 -2086.321785] SLOW spr round 9 (radius: 5) [01:15:26 -2075.132294] SLOW spr round 10 (radius: 5) [01:15:56 -2075.132289] SLOW spr round 11 (radius: 10) [01:16:28 -2074.480569] SLOW spr round 12 (radius: 5) [01:16:59 -2074.480569] SLOW spr round 13 (radius: 10) [01:17:30 -2074.480569] SLOW spr round 14 (radius: 15) [01:18:05 -2058.143425] SLOW spr round 15 (radius: 5) [01:18:38 -2056.813546] SLOW spr round 16 (radius: 5) [01:19:08 -2056.813332] SLOW spr round 17 (radius: 10) [01:19:39 -2056.813315] SLOW spr round 18 (radius: 15) [01:20:12 -2055.242630] SLOW spr round 19 (radius: 5) [01:20:44 -2055.242608] SLOW spr round 20 (radius: 10) [01:21:16 -2055.242608] SLOW spr round 21 (radius: 15) [01:21:50 -2055.242608] SLOW spr round 22 (radius: 20) [01:22:33 -2034.423470] SLOW spr round 23 (radius: 5) [01:23:08 -2034.046708] SLOW spr round 24 (radius: 5) [01:23:40 -2032.190338] SLOW spr round 25 (radius: 5) [01:24:10 -2032.190338] SLOW spr round 26 (radius: 10) [01:24:42 -2032.190338] SLOW spr round 27 (radius: 15) [01:25:17 -2023.757820] SLOW spr round 28 (radius: 5) [01:25:50 -2023.757820] SLOW spr round 29 (radius: 10) [01:26:23 -2019.709607] SLOW spr round 30 (radius: 5) [01:26:55 -2019.709581] SLOW spr round 31 (radius: 10) [01:27:27 -2019.709581] SLOW spr round 32 (radius: 15) [01:28:02 -2019.709581] SLOW spr round 33 (radius: 20) [01:28:44 -2013.990123] SLOW spr round 34 (radius: 5) [01:29:19 -2013.977205] SLOW spr round 35 (radius: 10) [01:29:51 -2012.686547] SLOW spr round 36 (radius: 5) [01:30:22 -2012.686532] SLOW spr round 37 (radius: 10) [01:30:53 -2012.686532] SLOW spr round 38 (radius: 15) [01:31:28 -2012.570719] SLOW spr round 39 (radius: 5) [01:32:01 -2012.570710] SLOW spr round 40 (radius: 10) [01:32:33 -2012.570710] SLOW spr round 41 (radius: 15) [01:33:07 -2012.570710] SLOW spr round 42 (radius: 20) [01:33:49 -2012.134740] SLOW spr round 43 (radius: 5) [01:34:23 -2012.134740] SLOW spr round 44 (radius: 10) [01:34:56 -2012.134740] SLOW spr round 45 (radius: 15) [01:35:31 -2012.134740] SLOW spr round 46 (radius: 20) [01:36:14 -2012.134740] SLOW spr round 47 (radius: 25) [01:37:01 -2005.565677] SLOW spr round 48 (radius: 5) [01:37:36 -2005.565657] SLOW spr round 49 (radius: 10) [01:38:09 -2002.495435] SLOW spr round 50 (radius: 5) [01:38:40 -2002.495435] SLOW spr round 51 (radius: 10) [01:39:12 -2002.283520] SLOW spr round 52 (radius: 5) [01:39:44 -2002.283520] SLOW spr round 53 (radius: 10) [01:40:16 -2002.283520] SLOW spr round 54 (radius: 15) [01:40:51 -2001.887664] SLOW spr round 55 (radius: 5) [01:41:25 -2001.162317] SLOW spr round 56 (radius: 5) [01:41:55 -2001.162311] SLOW spr round 57 (radius: 10) [01:42:27 -2001.162311] SLOW spr round 58 (radius: 15) [01:43:01 -2001.162311] SLOW spr round 59 (radius: 20) [01:43:43 -2000.040114] SLOW spr round 60 (radius: 5) [01:44:16 -2000.040114] SLOW spr round 61 (radius: 10) [01:44:47 -2000.040114] SLOW spr round 62 (radius: 15) [01:45:21 -2000.040114] SLOW spr round 63 (radius: 20) [01:46:02 -2000.040114] SLOW spr round 64 (radius: 25) [01:46:49 -2000.040114] Model parameter optimization (eps = 0.100000) [01:46:52] ML tree search #3, logLikelihood: -1999.526393 [01:46:52 -8279.882025] Initial branch length optimization [01:46:52 -6864.837898] Model parameter optimization (eps = 10.000000) [01:47:03 -6725.840615] AUTODETECT spr round 1 (radius: 5) [01:47:30 -4717.781961] AUTODETECT spr round 2 (radius: 10) [01:48:01 -3428.655770] AUTODETECT spr round 3 (radius: 15) [01:48:34 -2802.542652] AUTODETECT spr round 4 (radius: 20) [01:49:10 -2569.546352] AUTODETECT spr round 5 (radius: 25) [01:49:47 -2435.246772] SPR radius for FAST iterations: 25 (autodetect) [01:49:47 -2435.246772] Model parameter optimization (eps = 3.000000) [01:49:53 -2429.125072] FAST spr round 1 (radius: 25) [01:50:24 -2164.780583] FAST spr round 2 (radius: 25) [01:50:55 -2151.858221] FAST spr round 3 (radius: 25) [01:51:26 -2148.184634] FAST spr round 4 (radius: 25) [01:51:55 -2146.956051] FAST spr round 5 (radius: 25) [01:52:25 -2145.495216] FAST spr round 6 (radius: 25) [01:52:54 -2145.495215] Model parameter optimization (eps = 1.000000) [01:52:56 -2145.395984] SLOW spr round 1 (radius: 5) [01:53:28 -2144.865348] SLOW spr round 2 (radius: 5) [01:53:59 -2144.865333] SLOW spr round 3 (radius: 10) [01:54:32 -2140.347871] SLOW spr round 4 (radius: 5) [01:55:03 -2140.007354] SLOW spr round 5 (radius: 5) [01:55:33 -2140.007345] SLOW spr round 6 (radius: 10) [01:56:05 -2139.554153] SLOW spr round 7 (radius: 5) [01:56:36 -2139.554146] SLOW spr round 8 (radius: 10) [01:57:07 -2139.554140] SLOW spr round 9 (radius: 15) [01:57:43 -2107.847863] SLOW spr round 10 (radius: 5) [01:58:16 -2101.598688] SLOW spr round 11 (radius: 5) [01:58:47 -2101.598524] SLOW spr round 12 (radius: 10) [01:59:18 -2099.978607] SLOW spr round 13 (radius: 5) [01:59:49 -2099.911318] SLOW spr round 14 (radius: 10) [02:00:20 -2098.363325] SLOW spr round 15 (radius: 5) [02:00:51 -2098.363317] SLOW spr round 16 (radius: 10) [02:01:23 -2098.363313] SLOW spr round 17 (radius: 15) [02:01:58 -2097.677256] SLOW spr round 18 (radius: 5) [02:02:31 -2097.418514] SLOW spr round 19 (radius: 5) [02:03:02 -2097.418511] SLOW spr round 20 (radius: 10) [02:03:35 -2097.418508] SLOW spr round 21 (radius: 15) [02:04:10 -2097.418505] SLOW spr round 22 (radius: 20) [02:04:54 -2073.215547] SLOW spr round 23 (radius: 5) [02:05:28 -2073.150391] SLOW spr round 24 (radius: 10) [02:06:01 -2068.028604] SLOW spr round 25 (radius: 5) [02:06:32 -2068.028601] SLOW spr round 26 (radius: 10) [02:07:04 -2068.028599] SLOW spr round 27 (radius: 15) [02:07:39 -2066.995033] SLOW spr round 28 (radius: 5) [02:08:12 -2066.790498] SLOW spr round 29 (radius: 5) [02:08:42 -2066.790496] SLOW spr round 30 (radius: 10) [02:09:14 -2066.790494] SLOW spr round 31 (radius: 15) [02:09:49 -2066.790492] SLOW spr round 32 (radius: 20) [02:10:33 -2064.928053] SLOW spr round 33 (radius: 5) [02:11:06 -2064.924461] SLOW spr round 34 (radius: 10) [02:11:38 -2064.923203] SLOW spr round 35 (radius: 15) [02:12:12 -2064.922802] SLOW spr round 36 (radius: 20) [02:12:56 -2064.922680] SLOW spr round 37 (radius: 25) [02:13:43 -2049.804426] SLOW spr round 38 (radius: 5) [02:14:17 -2048.905109] SLOW spr round 39 (radius: 5) [02:14:49 -2048.904978] SLOW spr round 40 (radius: 10) [02:15:20 -2048.904971] SLOW spr round 41 (radius: 15) [02:15:56 -2042.378953] SLOW spr round 42 (radius: 5) [02:16:30 -2041.636800] SLOW spr round 43 (radius: 5) [02:17:01 -2041.636799] SLOW spr round 44 (radius: 10) [02:17:34 -2041.636798] SLOW spr round 45 (radius: 15) [02:18:09 -2041.636797] SLOW spr round 46 (radius: 20) [02:18:54 -2037.922680] SLOW spr round 47 (radius: 5) [02:19:28 -2037.922678] SLOW spr round 48 (radius: 10) [02:20:00 -2037.922677] SLOW spr round 49 (radius: 15) [02:20:35 -2037.922676] SLOW spr round 50 (radius: 20) [02:21:19 -2037.922676] SLOW spr round 51 (radius: 25) [02:22:05 -2036.713430] SLOW spr round 52 (radius: 5) [02:22:40 -2036.713429] SLOW spr round 53 (radius: 10) [02:23:12 -2036.713429] SLOW spr round 54 (radius: 15) [02:23:46 -2036.713428] SLOW spr round 55 (radius: 20) [02:24:29 -2036.713428] SLOW spr round 56 (radius: 25) [02:25:15 -2036.713427] Model parameter optimization (eps = 0.100000) [02:25:17] ML tree search #4, logLikelihood: -2036.673093 [02:25:17 -8190.626976] Initial branch length optimization [02:25:17 -6729.631542] Model parameter optimization (eps = 10.000000) [02:25:25 -6592.899629] AUTODETECT spr round 1 (radius: 5) [02:25:52 -4711.922796] AUTODETECT spr round 2 (radius: 10) [02:26:22 -3441.654987] AUTODETECT spr round 3 (radius: 15) [02:26:55 -2797.402943] AUTODETECT spr round 4 (radius: 20) [02:27:31 -2399.448029] AUTODETECT spr round 5 (radius: 25) [02:28:07 -2351.857544] SPR radius for FAST iterations: 25 (autodetect) [02:28:07 -2351.857544] Model parameter optimization (eps = 3.000000) [02:28:12 -2346.311756] FAST spr round 1 (radius: 25) [02:28:43 -2093.732006] FAST spr round 2 (radius: 25) [02:29:13 -2064.090864] FAST spr round 3 (radius: 25) [02:29:43 -2057.620786] FAST spr round 4 (radius: 25) [02:30:13 -2057.620468] Model parameter optimization (eps = 1.000000) [02:30:16 -2057.252942] SLOW spr round 1 (radius: 5) [02:30:47 -2056.386897] SLOW spr round 2 (radius: 5) [02:31:17 -2056.386786] SLOW spr round 3 (radius: 10) [02:31:49 -2055.078357] SLOW spr round 4 (radius: 5) [02:32:21 -2054.315859] SLOW spr round 5 (radius: 5) [02:32:51 -2054.315765] SLOW spr round 6 (radius: 10) [02:33:21 -2054.315750] SLOW spr round 7 (radius: 15) [02:33:55 -2040.113459] SLOW spr round 8 (radius: 5) [02:34:29 -2038.611086] SLOW spr round 9 (radius: 5) [02:35:00 -2038.610414] SLOW spr round 10 (radius: 10) [02:35:30 -2038.610381] SLOW spr round 11 (radius: 15) [02:36:03 -2038.610371] SLOW spr round 12 (radius: 20) [02:36:44 -2031.686374] SLOW spr round 13 (radius: 5) [02:37:18 -2025.739584] SLOW spr round 14 (radius: 5) [02:37:48 -2022.811521] SLOW spr round 15 (radius: 5) [02:38:18 -2022.811513] SLOW spr round 16 (radius: 10) [02:38:48 -2019.528038] SLOW spr round 17 (radius: 5) [02:39:19 -2017.957657] SLOW spr round 18 (radius: 5) [02:39:49 -2017.957648] SLOW spr round 19 (radius: 10) [02:40:18 -2017.957641] SLOW spr round 20 (radius: 15) [02:40:51 -2015.851888] SLOW spr round 21 (radius: 5) [02:41:23 -2015.094479] SLOW spr round 22 (radius: 5) [02:41:53 -2015.094469] SLOW spr round 23 (radius: 10) [02:42:22 -2015.094462] SLOW spr round 24 (radius: 15) [02:42:55 -2015.094455] SLOW spr round 25 (radius: 20) [02:43:35 -2010.602677] SLOW spr round 26 (radius: 5) [02:44:08 -2010.602384] SLOW spr round 27 (radius: 10) [02:44:40 -2010.449554] SLOW spr round 28 (radius: 5) [02:45:11 -2010.449548] SLOW spr round 29 (radius: 10) [02:45:42 -2010.449542] SLOW spr round 30 (radius: 15) [02:46:15 -2010.449535] SLOW spr round 31 (radius: 20) [02:46:56 -2010.449529] SLOW spr round 32 (radius: 25) [02:47:38 -2007.338741] SLOW spr round 33 (radius: 5) [02:48:13 -2003.545486] SLOW spr round 34 (radius: 5) [02:48:44 -2003.545157] SLOW spr round 35 (radius: 10) [02:49:15 -1999.286208] SLOW spr round 36 (radius: 5) [02:49:47 -1999.286191] SLOW spr round 37 (radius: 10) [02:50:17 -1999.286185] SLOW spr round 38 (radius: 15) [02:50:50 -1996.942806] SLOW spr round 39 (radius: 5) [02:51:23 -1996.942778] SLOW spr round 40 (radius: 10) [02:51:54 -1996.662800] SLOW spr round 41 (radius: 5) [02:52:25 -1996.662780] SLOW spr round 42 (radius: 10) [02:52:55 -1996.662775] SLOW spr round 43 (radius: 15) [02:53:28 -1996.662770] SLOW spr round 44 (radius: 20) [02:54:07 -1996.662765] SLOW spr round 45 (radius: 25) [02:54:49 -1996.662754] Model parameter optimization (eps = 0.100000) [02:54:55] ML tree search #5, logLikelihood: -1996.482933 [02:54:55 -8256.437680] Initial branch length optimization [02:54:55 -6806.941146] Model parameter optimization (eps = 10.000000) [02:55:05 -6668.708436] AUTODETECT spr round 1 (radius: 5) [02:55:32 -4662.123495] AUTODETECT spr round 2 (radius: 10) [02:56:02 -3426.049720] AUTODETECT spr round 3 (radius: 15) [02:56:34 -2791.151512] AUTODETECT spr round 4 (radius: 20) [02:57:09 -2455.085274] AUTODETECT spr round 5 (radius: 25) [02:57:47 -2311.351895] SPR radius for FAST iterations: 25 (autodetect) [02:57:47 -2311.351895] Model parameter optimization (eps = 3.000000) [02:57:52 -2307.519789] FAST spr round 1 (radius: 25) [02:58:22 -2103.962597] FAST spr round 2 (radius: 25) [02:58:52 -2084.477056] FAST spr round 3 (radius: 25) [02:59:21 -2083.594548] FAST spr round 4 (radius: 25) [02:59:51 -2083.591248] Model parameter optimization (eps = 1.000000) [02:59:52 -2083.554828] SLOW spr round 1 (radius: 5) [03:00:24 -2083.134159] SLOW spr round 2 (radius: 5) [03:00:54 -2083.133753] SLOW spr round 3 (radius: 10) [03:01:26 -2080.263103] SLOW spr round 4 (radius: 5) [03:01:58 -2079.364809] SLOW spr round 5 (radius: 5) [03:02:29 -2079.364797] SLOW spr round 6 (radius: 10) [03:03:00 -2079.364796] SLOW spr round 7 (radius: 15) [03:03:34 -2075.435988] SLOW spr round 8 (radius: 5) [03:04:07 -2074.933725] SLOW spr round 9 (radius: 5) [03:04:38 -2074.933724] SLOW spr round 10 (radius: 10) [03:05:09 -2074.464156] SLOW spr round 11 (radius: 5) [03:05:40 -2074.464085] SLOW spr round 12 (radius: 10) [03:06:11 -2074.464083] SLOW spr round 13 (radius: 15) [03:06:44 -2073.827655] SLOW spr round 14 (radius: 5) [03:07:17 -2073.825534] SLOW spr round 15 (radius: 10) [03:07:48 -2073.208013] SLOW spr round 16 (radius: 5) [03:08:19 -2073.207994] SLOW spr round 17 (radius: 10) [03:08:49 -2073.207993] SLOW spr round 18 (radius: 15) [03:09:22 -2073.207993] SLOW spr round 19 (radius: 20) [03:10:01 -2045.549811] SLOW spr round 20 (radius: 5) [03:10:34 -2042.393683] SLOW spr round 21 (radius: 5) [03:11:04 -2042.393660] SLOW spr round 22 (radius: 10) [03:11:35 -2042.393660] SLOW spr round 23 (radius: 15) [03:12:08 -2036.032128] SLOW spr round 24 (radius: 5) [03:12:41 -2036.032128] SLOW spr round 25 (radius: 10) [03:13:13 -2036.032128] SLOW spr round 26 (radius: 15) [03:13:46 -2036.032128] SLOW spr round 27 (radius: 20) [03:14:27 -2036.032128] SLOW spr round 28 (radius: 25) [03:15:12 -2027.762128] SLOW spr round 29 (radius: 5) [03:15:46 -2027.762128] SLOW spr round 30 (radius: 10) [03:16:19 -2027.762128] SLOW spr round 31 (radius: 15) [03:16:52 -2027.762128] SLOW spr round 32 (radius: 20) [03:17:32 -2027.762128] SLOW spr round 33 (radius: 25) [03:18:17 -2027.762128] Model parameter optimization (eps = 0.100000) [03:18:21] ML tree search #6, logLikelihood: -2027.181722 [03:18:21 -8222.340033] Initial branch length optimization [03:18:21 -6790.656875] Model parameter optimization (eps = 10.000000) [03:18:32 -6646.403137] AUTODETECT spr round 1 (radius: 5) [03:18:59 -4708.099111] AUTODETECT spr round 2 (radius: 10) [03:19:30 -3389.325830] AUTODETECT spr round 3 (radius: 15) [03:20:03 -2852.571581] AUTODETECT spr round 4 (radius: 20) [03:20:38 -2567.539944] AUTODETECT spr round 5 (radius: 25) [03:21:15 -2471.182105] SPR radius for FAST iterations: 25 (autodetect) [03:21:15 -2471.182105] Model parameter optimization (eps = 3.000000) [03:21:20 -2467.767290] FAST spr round 1 (radius: 25) [03:21:50 -2179.084661] FAST spr round 2 (radius: 25) [03:22:19 -2161.658720] FAST spr round 3 (radius: 25) [03:22:48 -2161.547017] FAST spr round 4 (radius: 25) [03:23:17 -2161.546176] Model parameter optimization (eps = 1.000000) [03:23:19 -2160.666783] SLOW spr round 1 (radius: 5) [03:23:50 -2154.805225] SLOW spr round 2 (radius: 5) [03:24:20 -2154.805083] SLOW spr round 3 (radius: 10) [03:24:51 -2152.248323] SLOW spr round 4 (radius: 5) [03:25:23 -2151.513300] SLOW spr round 5 (radius: 5) [03:25:53 -2151.513186] SLOW spr round 6 (radius: 10) [03:26:25 -2149.182738] SLOW spr round 7 (radius: 5) [03:26:57 -2149.182599] SLOW spr round 8 (radius: 10) [03:27:29 -2149.182480] SLOW spr round 9 (radius: 15) [03:28:02 -2143.942227] SLOW spr round 10 (radius: 5) [03:28:36 -2143.941879] SLOW spr round 11 (radius: 10) [03:29:08 -2143.941871] SLOW spr round 12 (radius: 15) [03:29:41 -2143.638071] SLOW spr round 13 (radius: 5) [03:30:15 -2143.638066] SLOW spr round 14 (radius: 10) [03:30:47 -2143.467976] SLOW spr round 15 (radius: 5) [03:31:18 -2143.467976] SLOW spr round 16 (radius: 10) [03:31:50 -2143.467976] SLOW spr round 17 (radius: 15) [03:32:22 -2140.339231] SLOW spr round 18 (radius: 5) [03:32:55 -2140.339229] SLOW spr round 19 (radius: 10) [03:33:27 -2140.339229] SLOW spr round 20 (radius: 15) [03:33:59 -2140.339229] SLOW spr round 21 (radius: 20) [03:34:36 -2132.253767] SLOW spr round 22 (radius: 5) [03:35:10 -2131.168706] SLOW spr round 23 (radius: 5) [03:35:40 -2131.168706] SLOW spr round 24 (radius: 10) [03:36:10 -2130.651506] SLOW spr round 25 (radius: 5) [03:36:41 -2130.651506] SLOW spr round 26 (radius: 10) [03:37:11 -2130.651506] SLOW spr round 27 (radius: 15) [03:37:44 -2129.862845] SLOW spr round 28 (radius: 5) [03:38:17 -2129.492167] SLOW spr round 29 (radius: 5) [03:38:48 -2129.492167] SLOW spr round 30 (radius: 10) [03:39:19 -2129.492167] SLOW spr round 31 (radius: 15) [03:39:52 -2129.492167] SLOW spr round 32 (radius: 20) [03:40:30 -2129.460484] SLOW spr round 33 (radius: 25) [03:41:11 -2126.360036] SLOW spr round 34 (radius: 5) [03:41:46 -2126.325177] SLOW spr round 35 (radius: 10) [03:42:18 -2124.347197] SLOW spr round 36 (radius: 5) [03:42:49 -2124.347172] SLOW spr round 37 (radius: 10) [03:43:21 -2124.347172] SLOW spr round 38 (radius: 15) [03:43:54 -2122.203150] SLOW spr round 39 (radius: 5) [03:44:28 -2122.203110] SLOW spr round 40 (radius: 10) [03:44:59 -2121.770124] SLOW spr round 41 (radius: 5) [03:45:30 -2121.770115] SLOW spr round 42 (radius: 10) [03:46:01 -2121.770115] SLOW spr round 43 (radius: 15) [03:46:33 -2121.770115] SLOW spr round 44 (radius: 20) [03:47:11 -2121.770115] SLOW spr round 45 (radius: 25) [03:47:51 -2116.694904] SLOW spr round 46 (radius: 5) [03:48:24 -2115.090816] SLOW spr round 47 (radius: 5) [03:48:55 -2115.090810] SLOW spr round 48 (radius: 10) [03:49:25 -2115.090810] SLOW spr round 49 (radius: 15) [03:49:57 -2115.090810] SLOW spr round 50 (radius: 20) [03:50:34 -2115.090810] SLOW spr round 51 (radius: 25) [03:51:15 -2114.511704] SLOW spr round 52 (radius: 5) [03:51:49 -2114.511700] SLOW spr round 53 (radius: 10) [03:52:21 -2114.511700] SLOW spr round 54 (radius: 15) [03:52:55 -2114.511700] SLOW spr round 55 (radius: 20) [03:53:33 -2114.511700] SLOW spr round 56 (radius: 25) [03:54:14 -2114.511700] Model parameter optimization (eps = 0.100000) [03:54:17] ML tree search #7, logLikelihood: -2114.290020 [03:54:17 -8270.959628] Initial branch length optimization [03:54:18 -6840.213416] Model parameter optimization (eps = 10.000000) [03:54:28 -6704.737638] AUTODETECT spr round 1 (radius: 5) [03:54:55 -4748.666299] AUTODETECT spr round 2 (radius: 10) [03:55:26 -3443.946958] AUTODETECT spr round 3 (radius: 15) [03:55:59 -2943.095792] AUTODETECT spr round 4 (radius: 20) [03:56:34 -2815.369531] AUTODETECT spr round 5 (radius: 25) [03:57:08 -2773.277311] SPR radius for FAST iterations: 25 (autodetect) [03:57:08 -2773.277311] Model parameter optimization (eps = 3.000000) [03:57:14 -2769.035794] FAST spr round 1 (radius: 25) [03:57:44 -2403.486321] FAST spr round 2 (radius: 25) [03:58:14 -2388.191371] FAST spr round 3 (radius: 25) [03:58:43 -2388.167726] Model parameter optimization (eps = 1.000000) [03:58:45 -2387.887874] SLOW spr round 1 (radius: 5) [03:59:16 -2387.725518] SLOW spr round 2 (radius: 5) [03:59:45 -2387.725484] SLOW spr round 3 (radius: 10) [04:00:16 -2379.025999] SLOW spr round 4 (radius: 5) [04:00:47 -2378.320215] SLOW spr round 5 (radius: 5) [04:01:17 -2378.318855] SLOW spr round 6 (radius: 10) [04:01:48 -2378.318767] SLOW spr round 7 (radius: 15) [04:02:22 -2368.976257] SLOW spr round 8 (radius: 5) [04:02:56 -2368.679734] SLOW spr round 9 (radius: 5) [04:03:27 -2368.679709] SLOW spr round 10 (radius: 10) [04:03:59 -2368.679708] SLOW spr round 11 (radius: 15) [04:04:35 -2364.132183] SLOW spr round 12 (radius: 5) [04:05:09 -2364.128393] SLOW spr round 13 (radius: 10) [04:05:41 -2363.967469] SLOW spr round 14 (radius: 5) [04:06:13 -2363.967469] SLOW spr round 15 (radius: 10) [04:06:45 -2363.967469] SLOW spr round 16 (radius: 15) [04:07:21 -2363.967469] SLOW spr round 17 (radius: 20) [04:08:04 -2352.748492] SLOW spr round 18 (radius: 5) [04:08:39 -2352.701421] SLOW spr round 19 (radius: 10) [04:09:12 -2351.122618] SLOW spr round 20 (radius: 5) [04:09:43 -2351.122616] SLOW spr round 21 (radius: 10) [04:10:15 -2351.122616] SLOW spr round 22 (radius: 15) [04:10:50 -2351.122616] SLOW spr round 23 (radius: 20) [04:11:33 -2350.481381] SLOW spr round 24 (radius: 5) [04:12:07 -2350.480780] SLOW spr round 25 (radius: 10) [04:12:39 -2350.480774] SLOW spr round 26 (radius: 15) [04:13:13 -2350.480774] SLOW spr round 27 (radius: 20) [04:13:56 -2350.480774] SLOW spr round 28 (radius: 25) [04:14:41 -2348.015006] SLOW spr round 29 (radius: 5) [04:15:15 -2341.571996] SLOW spr round 30 (radius: 5) [04:15:46 -2341.571996] SLOW spr round 31 (radius: 10) [04:16:18 -2341.571996] SLOW spr round 32 (radius: 15) [04:16:53 -2336.357733] SLOW spr round 33 (radius: 5) [04:17:28 -2336.206790] SLOW spr round 34 (radius: 5) [04:17:59 -2336.206790] SLOW spr round 35 (radius: 10) [04:18:31 -2334.756691] SLOW spr round 36 (radius: 5) [04:19:03 -2334.756666] SLOW spr round 37 (radius: 10) [04:19:35 -2334.371090] SLOW spr round 38 (radius: 5) [04:20:07 -2333.740616] SLOW spr round 39 (radius: 5) [04:20:38 -2333.740576] SLOW spr round 40 (radius: 10) [04:21:10 -2333.740552] SLOW spr round 41 (radius: 15) [04:21:46 -2333.100558] SLOW spr round 42 (radius: 5) [04:22:20 -2333.100534] SLOW spr round 43 (radius: 10) [04:22:52 -2333.100510] SLOW spr round 44 (radius: 15) [04:23:28 -2333.100486] SLOW spr round 45 (radius: 20) [04:24:12 -2322.452149] SLOW spr round 46 (radius: 5) [04:24:46 -2321.044669] SLOW spr round 47 (radius: 5) [04:25:17 -2321.044564] SLOW spr round 48 (radius: 10) [04:25:48 -2317.492098] SLOW spr round 49 (radius: 5) [04:26:19 -2317.080296] SLOW spr round 50 (radius: 5) [04:26:49 -2317.080200] SLOW spr round 51 (radius: 10) [04:27:20 -2317.024604] SLOW spr round 52 (radius: 15) [04:27:55 -2307.399392] SLOW spr round 53 (radius: 5) [04:28:30 -2301.049936] SLOW spr round 54 (radius: 5) [04:29:01 -2300.979771] SLOW spr round 55 (radius: 10) [04:29:33 -2300.979661] SLOW spr round 56 (radius: 15) [04:30:09 -2300.979636] SLOW spr round 57 (radius: 20) [04:30:52 -2300.979612] SLOW spr round 58 (radius: 25) [04:31:38 -2300.234843] SLOW spr round 59 (radius: 5) [04:32:14 -2279.369241] SLOW spr round 60 (radius: 5) [04:32:46 -2265.650948] SLOW spr round 61 (radius: 5) [04:33:16 -2265.650903] SLOW spr round 62 (radius: 10) [04:33:48 -2265.114309] SLOW spr round 63 (radius: 5) [04:34:20 -2265.114236] SLOW spr round 64 (radius: 10) [04:34:52 -2265.114205] SLOW spr round 65 (radius: 15) [04:35:28 -2265.114173] SLOW spr round 66 (radius: 20) [04:36:10 -2265.114140] SLOW spr round 67 (radius: 25) [04:36:54 -2265.114107] Model parameter optimization (eps = 0.100000) [04:36:56] ML tree search #8, logLikelihood: -2265.029401 [04:36:56 -8251.524978] Initial branch length optimization [04:36:56 -6793.434297] Model parameter optimization (eps = 10.000000) [04:37:06 -6654.072202] AUTODETECT spr round 1 (radius: 5) [04:37:33 -4725.961307] AUTODETECT spr round 2 (radius: 10) [04:38:04 -3452.893637] AUTODETECT spr round 3 (radius: 15) [04:38:37 -2803.365487] AUTODETECT spr round 4 (radius: 20) [04:39:11 -2614.063357] AUTODETECT spr round 5 (radius: 25) [04:39:45 -2563.068986] SPR radius for FAST iterations: 25 (autodetect) [04:39:45 -2563.068986] Model parameter optimization (eps = 3.000000) [04:39:48 -2560.123839] FAST spr round 1 (radius: 25) [04:40:19 -2265.261852] FAST spr round 2 (radius: 25) [04:40:49 -2239.747421] FAST spr round 3 (radius: 25) [04:41:18 -2238.005534] FAST spr round 4 (radius: 25) [04:41:47 -2237.370580] FAST spr round 5 (radius: 25) [04:42:15 -2237.370573] Model parameter optimization (eps = 1.000000) [04:42:18 -2237.251212] SLOW spr round 1 (radius: 5) [04:42:49 -2236.410563] SLOW spr round 2 (radius: 5) [04:43:19 -2234.832699] SLOW spr round 3 (radius: 5) [04:43:49 -2234.832699] SLOW spr round 4 (radius: 10) [04:44:21 -2232.559488] SLOW spr round 5 (radius: 5) [04:44:53 -2232.161147] SLOW spr round 6 (radius: 5) [04:45:23 -2232.161147] SLOW spr round 7 (radius: 10) [04:45:55 -2232.161144] SLOW spr round 8 (radius: 15) [04:46:31 -2194.253595] SLOW spr round 9 (radius: 5) [04:47:06 -2143.430920] SLOW spr round 10 (radius: 5) [04:47:38 -2142.163058] SLOW spr round 11 (radius: 5) [04:48:09 -2142.162985] SLOW spr round 12 (radius: 10) [04:48:41 -2138.876035] SLOW spr round 13 (radius: 5) [04:49:13 -2138.872188] SLOW spr round 14 (radius: 10) [04:49:45 -2138.870527] SLOW spr round 15 (radius: 15) [04:50:20 -2136.694718] SLOW spr round 16 (radius: 5) [04:50:53 -2136.694473] SLOW spr round 17 (radius: 10) [04:51:25 -2133.991154] SLOW spr round 18 (radius: 5) [04:51:56 -2133.990741] SLOW spr round 19 (radius: 10) [04:52:28 -2133.990737] SLOW spr round 20 (radius: 15) [04:53:02 -2133.990736] SLOW spr round 21 (radius: 20) [04:53:46 -2122.060090] SLOW spr round 22 (radius: 5) [04:54:19 -2112.042224] SLOW spr round 23 (radius: 5) [04:54:50 -2112.042215] SLOW spr round 24 (radius: 10) [04:55:20 -2112.042215] SLOW spr round 25 (radius: 15) [04:55:55 -2112.042215] SLOW spr round 26 (radius: 20) [04:56:38 -2112.042215] SLOW spr round 27 (radius: 25) [04:57:23 -2109.464995] SLOW spr round 28 (radius: 5) [04:57:57 -2109.219617] SLOW spr round 29 (radius: 5) [04:58:28 -2109.219617] SLOW spr round 30 (radius: 10) [04:59:00 -2109.219617] SLOW spr round 31 (radius: 15) [04:59:36 -2107.071594] SLOW spr round 32 (radius: 5) [05:00:10 -2107.071563] SLOW spr round 33 (radius: 10) [05:00:42 -2106.652734] SLOW spr round 34 (radius: 5) [05:01:13 -2106.652730] SLOW spr round 35 (radius: 10) [05:01:45 -2106.652730] SLOW spr round 36 (radius: 15) [05:02:21 -2106.652730] SLOW spr round 37 (radius: 20) [05:03:04 -2105.940456] SLOW spr round 38 (radius: 5) [05:03:39 -2105.940448] SLOW spr round 39 (radius: 10) [05:04:11 -2105.940448] SLOW spr round 40 (radius: 15) [05:04:47 -2105.940448] SLOW spr round 41 (radius: 20) [05:05:31 -2105.940448] SLOW spr round 42 (radius: 25) [05:06:16 -2105.940448] Model parameter optimization (eps = 0.100000) [05:06:21] ML tree search #9, logLikelihood: -2105.709601 [05:06:21 -8250.999126] Initial branch length optimization [05:06:21 -6786.132152] Model parameter optimization (eps = 10.000000) [05:06:29 -6650.329427] AUTODETECT spr round 1 (radius: 5) [05:06:56 -4746.005558] AUTODETECT spr round 2 (radius: 10) [05:07:27 -3383.278689] AUTODETECT spr round 3 (radius: 15) [05:07:59 -2873.506886] AUTODETECT spr round 4 (radius: 20) [05:08:35 -2579.249909] AUTODETECT spr round 5 (radius: 25) [05:09:17 -2381.685056] SPR radius for FAST iterations: 25 (autodetect) [05:09:17 -2381.685056] Model parameter optimization (eps = 3.000000) [05:09:22 -2376.730596] FAST spr round 1 (radius: 25) [05:09:53 -2098.665774] FAST spr round 2 (radius: 25) [05:10:23 -2087.893613] FAST spr round 3 (radius: 25) [05:10:53 -2087.788312] FAST spr round 4 (radius: 25) [05:11:22 -2087.786495] Model parameter optimization (eps = 1.000000) [05:11:24 -2087.153156] SLOW spr round 1 (radius: 5) [05:11:55 -2085.798392] SLOW spr round 2 (radius: 5) [05:12:25 -2085.798174] SLOW spr round 3 (radius: 10) [05:12:57 -2076.806504] SLOW spr round 4 (radius: 5) [05:13:29 -2073.331154] SLOW spr round 5 (radius: 5) [05:13:59 -2073.331012] SLOW spr round 6 (radius: 10) [05:14:31 -2070.676332] SLOW spr round 7 (radius: 5) [05:15:02 -2070.676262] SLOW spr round 8 (radius: 10) [05:15:33 -2070.676197] SLOW spr round 9 (radius: 15) [05:16:08 -2068.341940] SLOW spr round 10 (radius: 5) [05:16:42 -2065.059569] SLOW spr round 11 (radius: 5) [05:17:13 -2064.140466] SLOW spr round 12 (radius: 5) [05:17:43 -2064.140259] SLOW spr round 13 (radius: 10) [05:18:14 -2063.778534] SLOW spr round 14 (radius: 5) [05:18:45 -2063.778473] SLOW spr round 15 (radius: 10) [05:19:17 -2063.778413] SLOW spr round 16 (radius: 15) [05:19:52 -2063.443719] SLOW spr round 17 (radius: 5) [05:20:25 -2063.443660] SLOW spr round 18 (radius: 10) [05:20:58 -2062.658389] SLOW spr round 19 (radius: 5) [05:21:29 -2062.658321] SLOW spr round 20 (radius: 10) [05:22:01 -2062.658260] SLOW spr round 21 (radius: 15) [05:22:36 -2062.658200] SLOW spr round 22 (radius: 20) [05:23:21 -2054.031615] SLOW spr round 23 (radius: 5) [05:23:56 -2045.235539] SLOW spr round 24 (radius: 5) [05:24:27 -2045.040755] SLOW spr round 25 (radius: 5) [05:24:58 -2045.038864] SLOW spr round 26 (radius: 10) [05:25:29 -2044.855875] SLOW spr round 27 (radius: 5) [05:26:01 -2044.855821] SLOW spr round 28 (radius: 10) [05:26:32 -2044.855814] SLOW spr round 29 (radius: 15) [05:27:07 -2044.855812] SLOW spr round 30 (radius: 20) [05:27:54 -2044.400672] SLOW spr round 31 (radius: 5) [05:28:28 -2044.400672] SLOW spr round 32 (radius: 10) [05:29:00 -2044.400672] SLOW spr round 33 (radius: 15) [05:29:35 -2044.400672] SLOW spr round 34 (radius: 20) [05:30:21 -2044.400672] SLOW spr round 35 (radius: 25) [05:31:14 -2021.427082] SLOW spr round 36 (radius: 5) [05:31:50 -2010.893056] SLOW spr round 37 (radius: 5) [05:32:21 -2010.588141] SLOW spr round 38 (radius: 5) [05:32:52 -2010.588137] SLOW spr round 39 (radius: 10) [05:33:24 -2009.028049] SLOW spr round 40 (radius: 5) [05:33:55 -2009.028049] SLOW spr round 41 (radius: 10) [05:34:27 -2009.028049] SLOW spr round 42 (radius: 15) [05:35:02 -2000.855116] SLOW spr round 43 (radius: 5) [05:35:35 -2000.776901] SLOW spr round 44 (radius: 10) [05:36:08 -2000.589011] SLOW spr round 45 (radius: 5) [05:36:39 -2000.588897] SLOW spr round 46 (radius: 10) [05:37:11 -2000.588897] SLOW spr round 47 (radius: 15) [05:37:46 -2000.501479] SLOW spr round 48 (radius: 20) [05:38:33 -1999.301475] SLOW spr round 49 (radius: 5) [05:39:07 -1999.301475] SLOW spr round 50 (radius: 10) [05:39:40 -1999.301475] SLOW spr round 51 (radius: 15) [05:40:15 -1999.301475] SLOW spr round 52 (radius: 20) [05:41:01 -1999.301475] SLOW spr round 53 (radius: 25) [05:41:54 -1997.748830] SLOW spr round 54 (radius: 5) [05:42:30 -1991.850170] SLOW spr round 55 (radius: 5) [05:43:01 -1991.848688] SLOW spr round 56 (radius: 10) [05:43:33 -1991.243506] SLOW spr round 57 (radius: 5) [05:44:04 -1991.243505] SLOW spr round 58 (radius: 10) [05:44:36 -1991.243505] SLOW spr round 59 (radius: 15) [05:45:11 -1991.243505] SLOW spr round 60 (radius: 20) [05:45:57 -1991.243505] SLOW spr round 61 (radius: 25) [05:46:50 -1991.243505] Model parameter optimization (eps = 0.100000) [05:46:54] ML tree search #10, logLikelihood: -1990.862373 [05:46:54 -8204.864251] Initial branch length optimization [05:46:54 -6746.127787] Model parameter optimization (eps = 10.000000) [05:47:04 -6611.945803] AUTODETECT spr round 1 (radius: 5) [05:47:31 -4644.376518] AUTODETECT spr round 2 (radius: 10) [05:48:02 -3274.086319] AUTODETECT spr round 3 (radius: 15) [05:48:36 -2697.054125] AUTODETECT spr round 4 (radius: 20) [05:49:14 -2422.500775] AUTODETECT spr round 5 (radius: 25) [05:49:55 -2341.345667] SPR radius for FAST iterations: 25 (autodetect) [05:49:55 -2341.345667] Model parameter optimization (eps = 3.000000) [05:49:58 -2338.600598] FAST spr round 1 (radius: 25) [05:50:29 -2059.941098] FAST spr round 2 (radius: 25) [05:50:59 -2046.694109] FAST spr round 3 (radius: 25) [05:51:28 -2044.706809] FAST spr round 4 (radius: 25) [05:51:58 -2044.706503] Model parameter optimization (eps = 1.000000) [05:52:00 -2044.383330] SLOW spr round 1 (radius: 5) [05:52:31 -2043.989489] SLOW spr round 2 (radius: 5) [05:53:02 -2037.207952] SLOW spr round 3 (radius: 5) [05:53:33 -2037.207844] SLOW spr round 4 (radius: 10) [05:54:05 -2035.720461] SLOW spr round 5 (radius: 5) [05:54:36 -2034.970467] SLOW spr round 6 (radius: 5) [05:55:07 -2034.970448] SLOW spr round 7 (radius: 10) [05:55:39 -2034.970432] SLOW spr round 8 (radius: 15) [05:56:13 -2026.201697] SLOW spr round 9 (radius: 5) [05:56:47 -2023.135952] SLOW spr round 10 (radius: 5) [05:57:18 -2023.135927] SLOW spr round 11 (radius: 10) [05:57:50 -2023.135913] SLOW spr round 12 (radius: 15) [05:58:24 -2021.120135] SLOW spr round 13 (radius: 5) [05:58:57 -2021.120122] SLOW spr round 14 (radius: 10) [05:59:29 -2021.120109] SLOW spr round 15 (radius: 15) [06:00:03 -2021.120096] SLOW spr round 16 (radius: 20) [06:00:46 -2004.101977] SLOW spr round 17 (radius: 5) [06:01:20 -2000.405018] SLOW spr round 18 (radius: 5) [06:01:50 -2000.404899] SLOW spr round 19 (radius: 10) [06:02:21 -2000.404885] SLOW spr round 20 (radius: 15) [06:02:54 -2000.146582] SLOW spr round 21 (radius: 5) [06:03:27 -2000.146570] SLOW spr round 22 (radius: 10) [06:03:59 -2000.146558] SLOW spr round 23 (radius: 15) [06:04:32 -2000.146547] SLOW spr round 24 (radius: 20) [06:05:13 -2000.146536] SLOW spr round 25 (radius: 25) [06:06:01 -1964.696577] SLOW spr round 26 (radius: 5) [06:06:36 -1938.395912] SLOW spr round 27 (radius: 5) [06:07:07 -1937.967845] SLOW spr round 28 (radius: 5) [06:07:37 -1937.967844] SLOW spr round 29 (radius: 10) [06:08:08 -1927.542657] SLOW spr round 30 (radius: 5) [06:08:39 -1926.307769] SLOW spr round 31 (radius: 5) [06:09:09 -1926.272494] SLOW spr round 32 (radius: 10) [06:09:40 -1926.272486] SLOW spr round 33 (radius: 15) [06:10:13 -1926.271541] SLOW spr round 34 (radius: 20) [06:10:55 -1925.430261] SLOW spr round 35 (radius: 5) [06:11:28 -1925.430249] SLOW spr round 36 (radius: 10) [06:12:00 -1925.280236] SLOW spr round 37 (radius: 5) [06:12:30 -1925.280232] SLOW spr round 38 (radius: 10) [06:13:02 -1925.280229] SLOW spr round 39 (radius: 15) [06:13:35 -1925.280225] SLOW spr round 40 (radius: 20) [06:14:16 -1925.280222] SLOW spr round 41 (radius: 25) [06:15:02 -1924.743848] SLOW spr round 42 (radius: 5) [06:15:36 -1924.743821] SLOW spr round 43 (radius: 10) [06:16:08 -1924.743803] SLOW spr round 44 (radius: 15) [06:16:41 -1924.743786] SLOW spr round 45 (radius: 20) [06:17:23 -1924.743769] SLOW spr round 46 (radius: 25) [06:18:09 -1924.743752] Model parameter optimization (eps = 0.100000) [06:18:12] ML tree search #11, logLikelihood: -1924.577167 [06:18:12 -8252.597973] Initial branch length optimization [06:18:12 -6820.456227] Model parameter optimization (eps = 10.000000) [06:18:23 -6678.358184] AUTODETECT spr round 1 (radius: 5) [06:18:50 -4762.187571] AUTODETECT spr round 2 (radius: 10) [06:19:20 -3635.547745] AUTODETECT spr round 3 (radius: 15) [06:19:55 -2825.806158] AUTODETECT spr round 4 (radius: 20) [06:20:30 -2493.909683] AUTODETECT spr round 5 (radius: 25) [06:21:12 -2328.095311] SPR radius for FAST iterations: 25 (autodetect) [06:21:12 -2328.095311] Model parameter optimization (eps = 3.000000) [06:21:16 -2324.621987] FAST spr round 1 (radius: 25) [06:21:48 -2081.406760] FAST spr round 2 (radius: 25) [06:22:18 -2063.713910] FAST spr round 3 (radius: 25) [06:22:47 -2063.065208] FAST spr round 4 (radius: 25) [06:23:16 -2062.685345] FAST spr round 5 (radius: 25) [06:23:45 -2062.684988] Model parameter optimization (eps = 1.000000) [06:23:47 -2062.392612] SLOW spr round 1 (radius: 5) [06:24:19 -2059.101025] SLOW spr round 2 (radius: 5) [06:24:49 -2059.100904] SLOW spr round 3 (radius: 10) [06:25:20 -2055.025406] SLOW spr round 4 (radius: 5) [06:25:51 -2054.796859] SLOW spr round 5 (radius: 5) [06:26:21 -2054.607237] SLOW spr round 6 (radius: 5) [06:26:51 -2054.607235] SLOW spr round 7 (radius: 10) [06:27:22 -2054.570985] SLOW spr round 8 (radius: 15) [06:27:55 -2040.954587] SLOW spr round 9 (radius: 5) [06:28:28 -2037.819217] SLOW spr round 10 (radius: 5) [06:28:59 -2037.793134] SLOW spr round 11 (radius: 10) [06:29:30 -2035.930962] SLOW spr round 12 (radius: 5) [06:30:01 -2035.930948] SLOW spr round 13 (radius: 10) [06:30:32 -2035.930943] SLOW spr round 14 (radius: 15) [06:31:04 -2035.930942] SLOW spr round 15 (radius: 20) [06:31:42 -2020.969146] SLOW spr round 16 (radius: 5) [06:32:17 -2019.131858] SLOW spr round 17 (radius: 5) [06:32:48 -2019.131808] SLOW spr round 18 (radius: 10) [06:33:19 -2019.131804] SLOW spr round 19 (radius: 15) [06:33:51 -2019.131803] SLOW spr round 20 (radius: 20) [06:34:31 -2017.981612] SLOW spr round 21 (radius: 5) [06:35:05 -2017.981605] SLOW spr round 22 (radius: 10) [06:35:36 -2017.337104] SLOW spr round 23 (radius: 5) [06:36:08 -2017.337102] SLOW spr round 24 (radius: 10) [06:36:39 -2017.337102] SLOW spr round 25 (radius: 15) [06:37:12 -2016.538133] SLOW spr round 26 (radius: 5) [06:37:45 -2013.336295] SLOW spr round 27 (radius: 5) [06:38:16 -2004.637811] SLOW spr round 28 (radius: 5) [06:38:46 -2002.819344] SLOW spr round 29 (radius: 5) [06:39:16 -2002.819194] SLOW spr round 30 (radius: 10) [06:39:47 -2002.819186] SLOW spr round 31 (radius: 15) [06:40:20 -2002.434079] SLOW spr round 32 (radius: 5) [06:40:53 -2002.434079] SLOW spr round 33 (radius: 10) [06:41:25 -2002.434079] SLOW spr round 34 (radius: 15) [06:41:58 -2002.434079] SLOW spr round 35 (radius: 20) [06:42:38 -2001.891173] SLOW spr round 36 (radius: 5) [06:43:12 -2001.891163] SLOW spr round 37 (radius: 10) [06:43:43 -2001.891163] SLOW spr round 38 (radius: 15) [06:44:16 -2001.891163] SLOW spr round 39 (radius: 20) [06:44:56 -2001.891163] SLOW spr round 40 (radius: 25) [06:45:41 -1995.733177] SLOW spr round 41 (radius: 5) [06:46:16 -1995.068550] SLOW spr round 42 (radius: 5) [06:46:46 -1995.066800] SLOW spr round 43 (radius: 10) [06:47:17 -1993.572484] SLOW spr round 44 (radius: 5) [06:47:48 -1993.572483] SLOW spr round 45 (radius: 10) [06:48:18 -1993.572482] SLOW spr round 46 (radius: 15) [06:48:51 -1992.649157] SLOW spr round 47 (radius: 5) [06:49:24 -1992.649157] SLOW spr round 48 (radius: 10) [06:49:55 -1992.649157] SLOW spr round 49 (radius: 15) [06:50:28 -1992.649157] SLOW spr round 50 (radius: 20) [06:51:08 -1990.184546] SLOW spr round 51 (radius: 5) [06:51:43 -1972.253913] SLOW spr round 52 (radius: 5) [06:52:13 -1972.253869] SLOW spr round 53 (radius: 10) [06:52:44 -1972.253869] SLOW spr round 54 (radius: 15) [06:53:17 -1972.253869] SLOW spr round 55 (radius: 20) [06:53:57 -1972.253869] SLOW spr round 56 (radius: 25) [06:54:44 -1967.823762] SLOW spr round 57 (radius: 5) [06:55:18 -1967.823730] SLOW spr round 58 (radius: 10) [06:55:50 -1967.790700] SLOW spr round 59 (radius: 15) [06:56:23 -1967.790625] SLOW spr round 60 (radius: 20) [06:57:04 -1966.768510] SLOW spr round 61 (radius: 5) [06:57:38 -1966.768497] SLOW spr round 62 (radius: 10) [06:58:09 -1966.768496] SLOW spr round 63 (radius: 15) [06:58:42 -1966.768496] SLOW spr round 64 (radius: 20) [06:59:24 -1966.768496] SLOW spr round 65 (radius: 25) [07:00:11 -1966.703229] Model parameter optimization (eps = 0.100000) [07:00:14] ML tree search #12, logLikelihood: -1966.564425 [07:00:14 -8191.916529] Initial branch length optimization [07:00:14 -6770.519805] Model parameter optimization (eps = 10.000000) [07:00:24 -6625.207502] AUTODETECT spr round 1 (radius: 5) [07:00:51 -4664.675979] AUTODETECT spr round 2 (radius: 10) [07:01:20 -3521.271701] AUTODETECT spr round 3 (radius: 15) [07:01:52 -3012.402894] AUTODETECT spr round 4 (radius: 20) [07:02:26 -2710.638455] AUTODETECT spr round 5 (radius: 25) [07:03:03 -2480.047438] SPR radius for FAST iterations: 25 (autodetect) [07:03:03 -2480.047438] Model parameter optimization (eps = 3.000000) [07:03:08 -2476.478731] FAST spr round 1 (radius: 25) [07:03:38 -2137.845654] FAST spr round 2 (radius: 25) [07:04:08 -2103.934444] FAST spr round 3 (radius: 25) [07:04:37 -2074.895572] FAST spr round 4 (radius: 25) [07:05:05 -2074.173137] FAST spr round 5 (radius: 25) [07:05:33 -2074.170072] Model parameter optimization (eps = 1.000000) [07:05:36 -2073.827756] SLOW spr round 1 (radius: 5) [07:06:06 -2072.630993] SLOW spr round 2 (radius: 5) [07:06:36 -2071.696166] SLOW spr round 3 (radius: 5) [07:07:05 -2071.695833] SLOW spr round 4 (radius: 10) [07:07:36 -2043.305568] SLOW spr round 5 (radius: 5) [07:08:07 -2042.345783] SLOW spr round 6 (radius: 5) [07:08:37 -2042.345505] SLOW spr round 7 (radius: 10) [07:09:08 -2031.388422] SLOW spr round 8 (radius: 5) [07:09:38 -2031.388399] SLOW spr round 9 (radius: 10) [07:10:09 -2031.388392] SLOW spr round 10 (radius: 15) [07:10:42 -2018.613791] SLOW spr round 11 (radius: 5) [07:11:15 -2018.396246] SLOW spr round 12 (radius: 5) [07:11:45 -2018.396244] SLOW spr round 13 (radius: 10) [07:12:15 -2018.396243] SLOW spr round 14 (radius: 15) [07:12:48 -2018.266867] SLOW spr round 15 (radius: 5) [07:13:21 -2018.266867] SLOW spr round 16 (radius: 10) [07:13:52 -2017.730981] SLOW spr round 17 (radius: 5) [07:14:23 -2017.714892] SLOW spr round 18 (radius: 10) [07:14:54 -2017.714710] SLOW spr round 19 (radius: 15) [07:15:27 -2017.714609] SLOW spr round 20 (radius: 20) [07:16:07 -2004.977832] SLOW spr round 21 (radius: 5) [07:16:41 -2004.808885] SLOW spr round 22 (radius: 5) [07:17:11 -2004.808873] SLOW spr round 23 (radius: 10) [07:17:42 -2004.808863] SLOW spr round 24 (radius: 15) [07:18:14 -2004.808861] SLOW spr round 25 (radius: 20) [07:18:54 -2004.808860] SLOW spr round 26 (radius: 25) [07:19:35 -1988.711030] SLOW spr round 27 (radius: 5) [07:20:09 -1988.536836] SLOW spr round 28 (radius: 5) [07:20:39 -1988.536835] SLOW spr round 29 (radius: 10) [07:21:09 -1988.536835] SLOW spr round 30 (radius: 15) [07:21:42 -1988.536835] SLOW spr round 31 (radius: 20) [07:22:21 -1988.536835] SLOW spr round 32 (radius: 25) [07:23:02 -1988.536835] Model parameter optimization (eps = 0.100000) [07:23:06] ML tree search #13, logLikelihood: -1987.861970 [07:23:06 -8242.983050] Initial branch length optimization [07:23:07 -6798.488651] Model parameter optimization (eps = 10.000000) [07:23:16 -6662.640674] AUTODETECT spr round 1 (radius: 5) [07:23:42 -4714.881546] AUTODETECT spr round 2 (radius: 10) [07:24:12 -3458.757808] AUTODETECT spr round 3 (radius: 15) [07:24:44 -2932.814395] AUTODETECT spr round 4 (radius: 20) [07:25:19 -2748.466177] AUTODETECT spr round 5 (radius: 25) [07:25:56 -2530.732183] SPR radius for FAST iterations: 25 (autodetect) [07:25:56 -2530.732183] Model parameter optimization (eps = 3.000000) [07:26:00 -2525.906732] FAST spr round 1 (radius: 25) [07:26:31 -2147.152191] FAST spr round 2 (radius: 25) [07:27:00 -2122.129121] FAST spr round 3 (radius: 25) [07:27:29 -2114.953676] FAST spr round 4 (radius: 25) [07:27:58 -2114.953516] Model parameter optimization (eps = 1.000000) [07:28:00 -2114.627326] SLOW spr round 1 (radius: 5) [07:28:31 -2114.340540] SLOW spr round 2 (radius: 5) [07:29:00 -2114.340499] SLOW spr round 3 (radius: 10) [07:29:31 -2112.193255] SLOW spr round 4 (radius: 5) [07:30:02 -2111.118256] SLOW spr round 5 (radius: 5) [07:30:32 -2110.963330] SLOW spr round 6 (radius: 5) [07:31:02 -2110.963322] SLOW spr round 7 (radius: 10) [07:31:32 -2110.963315] SLOW spr round 8 (radius: 15) [07:32:05 -2093.438768] SLOW spr round 9 (radius: 5) [07:32:38 -2079.238848] SLOW spr round 10 (radius: 5) [07:33:07 -2079.238820] SLOW spr round 11 (radius: 10) [07:33:38 -2079.238812] SLOW spr round 12 (radius: 15) [07:34:10 -2077.842767] SLOW spr round 13 (radius: 5) [07:34:42 -2077.842760] SLOW spr round 14 (radius: 10) [07:35:13 -2077.842752] SLOW spr round 15 (radius: 15) [07:35:45 -2077.842745] SLOW spr round 16 (radius: 20) [07:36:23 -2063.386544] SLOW spr round 17 (radius: 5) [07:36:55 -2063.215594] SLOW spr round 18 (radius: 5) [07:37:26 -2063.215583] SLOW spr round 19 (radius: 10) [07:37:56 -2063.215575] SLOW spr round 20 (radius: 15) [07:38:28 -2062.888772] SLOW spr round 21 (radius: 5) [07:39:00 -2062.888738] SLOW spr round 22 (radius: 10) [07:39:31 -2062.888730] SLOW spr round 23 (radius: 15) [07:40:03 -2062.888723] SLOW spr round 24 (radius: 20) [07:40:39 -2062.888716] SLOW spr round 25 (radius: 25) [07:41:20 -2050.997045] SLOW spr round 26 (radius: 5) [07:41:54 -2038.350804] SLOW spr round 27 (radius: 5) [07:42:25 -2035.542636] SLOW spr round 28 (radius: 5) [07:42:55 -2035.542473] SLOW spr round 29 (radius: 10) [07:43:26 -2032.776762] SLOW spr round 30 (radius: 5) [07:43:57 -2032.130369] SLOW spr round 31 (radius: 5) [07:44:26 -2032.129848] SLOW spr round 32 (radius: 10) [07:44:57 -2032.096128] SLOW spr round 33 (radius: 15) [07:45:29 -2032.096121] SLOW spr round 34 (radius: 20) [07:46:06 -2032.096113] SLOW spr round 35 (radius: 25) [07:46:46 -2021.882644] SLOW spr round 36 (radius: 5) [07:47:19 -2021.882596] SLOW spr round 37 (radius: 10) [07:47:51 -2021.882585] SLOW spr round 38 (radius: 15) [07:48:23 -2021.882578] SLOW spr round 39 (radius: 20) [07:49:01 -2019.522073] SLOW spr round 40 (radius: 5) [07:49:35 -2019.462260] SLOW spr round 41 (radius: 10) [07:50:06 -2019.462245] SLOW spr round 42 (radius: 15) [07:50:38 -2019.462238] SLOW spr round 43 (radius: 20) [07:51:17 -2018.732973] SLOW spr round 44 (radius: 5) [07:51:50 -2018.732966] SLOW spr round 45 (radius: 10) [07:52:22 -2018.732958] SLOW spr round 46 (radius: 15) [07:52:54 -2018.732951] SLOW spr round 47 (radius: 20) [07:53:33 -2018.732944] SLOW spr round 48 (radius: 25) [07:54:14 -2018.732936] Model parameter optimization (eps = 0.100000) [07:54:17] ML tree search #14, logLikelihood: -2018.630876 [07:54:17 -8273.664000] Initial branch length optimization [07:54:17 -6816.553246] Model parameter optimization (eps = 10.000000) [07:54:27 -6676.201100] AUTODETECT spr round 1 (radius: 5) [07:54:55 -4624.786476] AUTODETECT spr round 2 (radius: 10) [07:55:25 -3465.245782] AUTODETECT spr round 3 (radius: 15) [07:55:59 -2806.915956] AUTODETECT spr round 4 (radius: 20) [07:56:35 -2503.763473] AUTODETECT spr round 5 (radius: 25) [07:57:12 -2361.770080] SPR radius for FAST iterations: 25 (autodetect) [07:57:12 -2361.770080] Model parameter optimization (eps = 3.000000) [07:57:17 -2356.843556] FAST spr round 1 (radius: 25) [07:57:48 -2100.757281] FAST spr round 2 (radius: 25) [07:58:18 -2073.041121] FAST spr round 3 (radius: 25) [07:58:48 -2067.759722] FAST spr round 4 (radius: 25) [07:59:17 -2067.449793] FAST spr round 5 (radius: 25) [07:59:45 -2067.449584] Model parameter optimization (eps = 1.000000) [07:59:47 -2066.658779] SLOW spr round 1 (radius: 5) [08:00:18 -2066.611863] SLOW spr round 2 (radius: 10) [08:00:49 -2053.568964] SLOW spr round 3 (radius: 5) [08:01:21 -2053.468684] SLOW spr round 4 (radius: 5) [08:01:51 -2053.458154] SLOW spr round 5 (radius: 10) [08:02:22 -2053.455901] SLOW spr round 6 (radius: 15) [08:02:57 -2023.039563] SLOW spr round 7 (radius: 5) [08:03:30 -2013.761644] SLOW spr round 8 (radius: 5) [08:04:01 -2013.761547] SLOW spr round 9 (radius: 10) [08:04:32 -2013.761526] SLOW spr round 10 (radius: 15) [08:05:06 -2004.894954] SLOW spr round 11 (radius: 5) [08:05:39 -2002.819563] SLOW spr round 12 (radius: 5) [08:06:09 -2002.819505] SLOW spr round 13 (radius: 10) [08:06:40 -2002.585586] SLOW spr round 14 (radius: 5) [08:07:11 -2002.585569] SLOW spr round 15 (radius: 10) [08:07:42 -2002.585552] SLOW spr round 16 (radius: 15) [08:08:15 -1999.841304] SLOW spr round 17 (radius: 5) [08:08:48 -1999.841275] SLOW spr round 18 (radius: 10) [08:09:20 -1996.559182] SLOW spr round 19 (radius: 5) [08:09:50 -1996.559161] SLOW spr round 20 (radius: 10) [08:10:21 -1996.559144] SLOW spr round 21 (radius: 15) [08:10:56 -1990.109809] SLOW spr round 22 (radius: 5) [08:11:29 -1983.781280] SLOW spr round 23 (radius: 5) [08:12:00 -1983.781240] SLOW spr round 24 (radius: 10) [08:12:31 -1983.781224] SLOW spr round 25 (radius: 15) [08:13:05 -1982.986344] SLOW spr round 26 (radius: 5) [08:13:38 -1982.986325] SLOW spr round 27 (radius: 10) [08:14:10 -1982.986309] SLOW spr round 28 (radius: 15) [08:14:44 -1982.986292] SLOW spr round 29 (radius: 20) [08:15:26 -1980.775324] SLOW spr round 30 (radius: 5) [08:16:01 -1980.153552] SLOW spr round 31 (radius: 5) [08:16:31 -1980.108906] SLOW spr round 32 (radius: 10) [08:17:02 -1980.108888] SLOW spr round 33 (radius: 15) [08:17:37 -1980.108871] SLOW spr round 34 (radius: 20) [08:18:20 -1980.108854] SLOW spr round 35 (radius: 25) [08:19:06 -1974.985017] SLOW spr round 36 (radius: 5) [08:19:40 -1974.984994] SLOW spr round 37 (radius: 10) [08:20:12 -1972.135326] SLOW spr round 38 (radius: 5) [08:20:43 -1967.606534] SLOW spr round 39 (radius: 5) [08:21:13 -1967.606515] SLOW spr round 40 (radius: 10) [08:21:44 -1967.606496] SLOW spr round 41 (radius: 15) [08:22:19 -1964.129522] SLOW spr round 42 (radius: 5) [08:22:51 -1964.129502] SLOW spr round 43 (radius: 10) [08:23:23 -1964.129483] SLOW spr round 44 (radius: 15) [08:23:58 -1964.129463] SLOW spr round 45 (radius: 20) [08:24:41 -1963.558036] SLOW spr round 46 (radius: 5) [08:25:15 -1963.558016] SLOW spr round 47 (radius: 10) [08:25:46 -1963.557995] SLOW spr round 48 (radius: 15) [08:26:21 -1963.557974] SLOW spr round 49 (radius: 20) [08:27:05 -1963.557953] SLOW spr round 50 (radius: 25) [08:27:49 -1963.557931] Model parameter optimization (eps = 0.100000) [08:27:52] ML tree search #15, logLikelihood: -1963.349431 [08:27:52 -8270.630659] Initial branch length optimization [08:27:52 -6805.694486] Model parameter optimization (eps = 10.000000) [08:28:01 -6675.047487] AUTODETECT spr round 1 (radius: 5) [08:28:27 -4796.832774] AUTODETECT spr round 2 (radius: 10) [08:28:59 -3486.581164] AUTODETECT spr round 3 (radius: 15) [08:29:32 -3047.609080] AUTODETECT spr round 4 (radius: 20) [08:30:07 -2729.139677] AUTODETECT spr round 5 (radius: 25) [08:30:46 -2498.833627] SPR radius for FAST iterations: 25 (autodetect) [08:30:46 -2498.833627] Model parameter optimization (eps = 3.000000) [08:30:51 -2491.250029] FAST spr round 1 (radius: 25) [08:31:22 -2181.064576] FAST spr round 2 (radius: 25) [08:31:52 -2151.641479] FAST spr round 3 (radius: 25) [08:32:20 -2151.626383] Model parameter optimization (eps = 1.000000) [08:32:22 -2151.560752] SLOW spr round 1 (radius: 5) [08:32:53 -2150.523228] SLOW spr round 2 (radius: 5) [08:33:22 -2150.523105] SLOW spr round 3 (radius: 10) [08:33:54 -2135.215001] SLOW spr round 4 (radius: 5) [08:34:25 -2133.503317] SLOW spr round 5 (radius: 5) [08:34:55 -2132.968147] SLOW spr round 6 (radius: 5) [08:35:24 -2132.968100] SLOW spr round 7 (radius: 10) [08:35:55 -2132.595931] SLOW spr round 8 (radius: 5) [08:36:26 -2132.595879] SLOW spr round 9 (radius: 10) [08:36:57 -2132.595836] SLOW spr round 10 (radius: 15) [08:37:31 -2116.044072] SLOW spr round 11 (radius: 5) [08:38:04 -2116.027955] SLOW spr round 12 (radius: 10) [08:38:36 -2114.464607] SLOW spr round 13 (radius: 5) [08:39:07 -2114.449730] SLOW spr round 14 (radius: 10) [08:39:39 -2112.838516] SLOW spr round 15 (radius: 5) [08:40:10 -2112.836798] SLOW spr round 16 (radius: 10) [08:40:41 -2112.836750] SLOW spr round 17 (radius: 15) [08:41:15 -2110.637477] SLOW spr round 18 (radius: 5) [08:41:49 -2110.632314] SLOW spr round 19 (radius: 10) [08:42:20 -2110.631095] SLOW spr round 20 (radius: 15) [08:42:55 -2110.630799] SLOW spr round 21 (radius: 20) [08:43:37 -2093.764945] SLOW spr round 22 (radius: 5) [08:44:11 -2086.063340] SLOW spr round 23 (radius: 5) [08:44:42 -2086.063329] SLOW spr round 24 (radius: 10) [08:45:13 -2086.061447] SLOW spr round 25 (radius: 15) [08:45:48 -2086.061412] SLOW spr round 26 (radius: 20) [08:46:30 -2081.846351] SLOW spr round 27 (radius: 5) [08:47:04 -2077.837015] SLOW spr round 28 (radius: 5) [08:47:35 -2077.833627] SLOW spr round 29 (radius: 10) [08:48:06 -2077.619191] SLOW spr round 30 (radius: 5) [08:48:37 -2077.231757] SLOW spr round 31 (radius: 5) [08:49:07 -2077.231741] SLOW spr round 32 (radius: 10) [08:49:38 -2077.231735] SLOW spr round 33 (radius: 15) [08:50:12 -2077.231731] SLOW spr round 34 (radius: 20) [08:50:54 -2077.231727] SLOW spr round 35 (radius: 25) [08:51:43 -2067.220022] SLOW spr round 36 (radius: 5) [08:52:17 -2052.777215] SLOW spr round 37 (radius: 5) [08:52:48 -2052.750505] SLOW spr round 38 (radius: 10) [08:53:19 -2051.641712] SLOW spr round 39 (radius: 5) [08:53:50 -2049.137842] SLOW spr round 40 (radius: 5) [08:54:19 -2049.137825] SLOW spr round 41 (radius: 10) [08:54:50 -2049.137814] SLOW spr round 42 (radius: 15) [08:55:24 -2049.137805] SLOW spr round 43 (radius: 20) [08:56:07 -2044.042234] SLOW spr round 44 (radius: 5) [08:56:41 -2042.673478] SLOW spr round 45 (radius: 5) [08:57:11 -2042.673466] SLOW spr round 46 (radius: 10) [08:57:42 -2042.673457] SLOW spr round 47 (radius: 15) [08:58:16 -2042.673447] SLOW spr round 48 (radius: 20) [08:58:59 -2042.673438] SLOW spr round 49 (radius: 25) [08:59:46 -2041.779987] SLOW spr round 50 (radius: 5) [09:00:20 -2041.779976] SLOW spr round 51 (radius: 10) [09:00:52 -2041.779967] SLOW spr round 52 (radius: 15) [09:01:26 -2041.779958] SLOW spr round 53 (radius: 20) [09:02:09 -2041.040628] SLOW spr round 54 (radius: 5) [09:02:42 -2041.040619] SLOW spr round 55 (radius: 10) [09:03:14 -2041.040610] SLOW spr round 56 (radius: 15) [09:03:48 -2041.040602] SLOW spr round 57 (radius: 20) [09:04:31 -2041.040593] SLOW spr round 58 (radius: 25) [09:05:19 -2041.040585] Model parameter optimization (eps = 0.100000) [09:05:22] ML tree search #16, logLikelihood: -2040.628669 [09:05:23 -8198.043085] Initial branch length optimization [09:05:23 -6761.578677] Model parameter optimization (eps = 10.000000) [09:05:32 -6628.084536] AUTODETECT spr round 1 (radius: 5) [09:05:59 -4673.928720] AUTODETECT spr round 2 (radius: 10) [09:06:29 -3495.035539] AUTODETECT spr round 3 (radius: 15) [09:07:01 -2924.821154] AUTODETECT spr round 4 (radius: 20) [09:07:37 -2632.452664] AUTODETECT spr round 5 (radius: 25) [09:08:16 -2504.563989] SPR radius for FAST iterations: 25 (autodetect) [09:08:16 -2504.563989] Model parameter optimization (eps = 3.000000) [09:08:20 -2499.573977] FAST spr round 1 (radius: 25) [09:08:51 -2208.784255] FAST spr round 2 (radius: 25) [09:09:21 -2191.887792] FAST spr round 3 (radius: 25) [09:09:50 -2185.306789] FAST spr round 4 (radius: 25) [09:10:19 -2185.306707] Model parameter optimization (eps = 1.000000) [09:10:21 -2185.221318] SLOW spr round 1 (radius: 5) [09:10:52 -2185.051312] SLOW spr round 2 (radius: 5) [09:11:22 -2185.051281] SLOW spr round 3 (radius: 10) [09:11:54 -2181.950519] SLOW spr round 4 (radius: 5) [09:12:25 -2180.422384] SLOW spr round 5 (radius: 5) [09:12:55 -2180.340444] SLOW spr round 6 (radius: 10) [09:13:27 -2179.477082] SLOW spr round 7 (radius: 5) [09:13:57 -2179.477081] SLOW spr round 8 (radius: 10) [09:14:29 -2179.477080] SLOW spr round 9 (radius: 15) [09:15:05 -2170.553171] SLOW spr round 10 (radius: 5) [09:15:39 -2170.254850] SLOW spr round 11 (radius: 5) [09:16:09 -2170.254837] SLOW spr round 12 (radius: 10) [09:16:41 -2170.254836] SLOW spr round 13 (radius: 15) [09:17:16 -2164.097383] SLOW spr round 14 (radius: 5) [09:17:50 -2164.097327] SLOW spr round 15 (radius: 10) [09:18:21 -2163.525662] SLOW spr round 16 (radius: 5) [09:18:53 -2163.524569] SLOW spr round 17 (radius: 10) [09:19:24 -2163.523959] SLOW spr round 18 (radius: 15) [09:19:59 -2163.523513] SLOW spr round 19 (radius: 20) [09:20:46 -2148.677540] SLOW spr round 20 (radius: 5) [09:21:21 -2133.559707] SLOW spr round 21 (radius: 5) [09:21:53 -2125.380051] SLOW spr round 22 (radius: 5) [09:22:23 -2124.860494] SLOW spr round 23 (radius: 5) [09:22:53 -2124.860492] SLOW spr round 24 (radius: 10) [09:23:24 -2124.860480] SLOW spr round 25 (radius: 15) [09:24:00 -2124.699576] SLOW spr round 26 (radius: 5) [09:24:34 -2122.780732] SLOW spr round 27 (radius: 5) [09:25:05 -2122.739028] SLOW spr round 28 (radius: 10) [09:25:36 -2122.739002] SLOW spr round 29 (radius: 15) [09:26:11 -2122.739000] SLOW spr round 30 (radius: 20) [09:26:58 -2114.416790] SLOW spr round 31 (radius: 5) [09:27:33 -2110.208722] SLOW spr round 32 (radius: 5) [09:28:04 -2110.208722] SLOW spr round 33 (radius: 10) [09:28:35 -2110.208721] SLOW spr round 34 (radius: 15) [09:29:10 -2110.208720] SLOW spr round 35 (radius: 20) [09:29:56 -2110.208719] SLOW spr round 36 (radius: 25) [09:30:49 -2098.361736] SLOW spr round 37 (radius: 5) [09:31:24 -2092.038572] SLOW spr round 38 (radius: 5) [09:31:56 -2092.038571] SLOW spr round 39 (radius: 10) [09:32:27 -2092.038570] SLOW spr round 40 (radius: 15) [09:33:02 -2092.038569] SLOW spr round 41 (radius: 20) [09:33:46 -2092.038568] SLOW spr round 42 (radius: 25) [09:34:37 -2091.207488] SLOW spr round 43 (radius: 5) [09:35:12 -2091.207474] SLOW spr round 44 (radius: 10) [09:35:44 -2089.258607] SLOW spr round 45 (radius: 5) [09:36:16 -2089.258106] SLOW spr round 46 (radius: 10) [09:36:47 -2089.258094] SLOW spr round 47 (radius: 15) [09:37:22 -2089.258088] SLOW spr round 48 (radius: 20) [09:38:07 -2089.258087] SLOW spr round 49 (radius: 25) [09:38:58 -2089.258085] Model parameter optimization (eps = 0.100000) [09:39:01] ML tree search #17, logLikelihood: -2089.061706 [09:39:01 -8234.377750] Initial branch length optimization [09:39:02 -6777.028799] Model parameter optimization (eps = 10.000000) [09:39:11 -6636.780440] AUTODETECT spr round 1 (radius: 5) [09:39:38 -4628.288373] AUTODETECT spr round 2 (radius: 10) [09:40:08 -3531.655640] AUTODETECT spr round 3 (radius: 15) [09:40:41 -3006.389150] AUTODETECT spr round 4 (radius: 20) [09:41:16 -2742.884882] AUTODETECT spr round 5 (radius: 25) [09:41:53 -2683.859626] SPR radius for FAST iterations: 25 (autodetect) [09:41:53 -2683.859626] Model parameter optimization (eps = 3.000000) [09:42:00 -2672.828008] FAST spr round 1 (radius: 25) [09:42:30 -2359.502403] FAST spr round 2 (radius: 25) [09:42:59 -2339.961079] FAST spr round 3 (radius: 25) [09:43:28 -2339.826503] FAST spr round 4 (radius: 25) [09:43:56 -2339.826322] Model parameter optimization (eps = 1.000000) [09:43:59 -2339.752116] SLOW spr round 1 (radius: 5) [09:44:29 -2339.230768] SLOW spr round 2 (radius: 5) [09:44:59 -2339.227424] SLOW spr round 3 (radius: 10) [09:45:30 -2334.242193] SLOW spr round 4 (radius: 5) [09:46:01 -2332.298049] SLOW spr round 5 (radius: 5) [09:46:31 -2332.297705] SLOW spr round 6 (radius: 10) [09:47:02 -2332.297675] SLOW spr round 7 (radius: 15) [09:47:35 -2305.432533] SLOW spr round 8 (radius: 5) [09:48:08 -2304.451868] SLOW spr round 9 (radius: 5) [09:48:38 -2304.451847] SLOW spr round 10 (radius: 10) [09:49:08 -2304.354953] SLOW spr round 11 (radius: 15) [09:49:41 -2303.037906] SLOW spr round 12 (radius: 5) [09:50:13 -2303.037882] SLOW spr round 13 (radius: 10) [09:50:44 -2303.037876] SLOW spr round 14 (radius: 15) [09:51:17 -2303.037870] SLOW spr round 15 (radius: 20) [09:51:55 -2292.534572] SLOW spr round 16 (radius: 5) [09:52:28 -2292.100620] SLOW spr round 17 (radius: 5) [09:52:59 -2292.075997] SLOW spr round 18 (radius: 10) [09:53:29 -2292.075139] SLOW spr round 19 (radius: 15) [09:54:01 -2292.075103] SLOW spr round 20 (radius: 20) [09:54:38 -2292.075098] SLOW spr round 21 (radius: 25) [09:55:19 -2263.322840] SLOW spr round 22 (radius: 5) [09:55:54 -2247.104292] SLOW spr round 23 (radius: 5) [09:56:25 -2239.672829] SLOW spr round 24 (radius: 5) [09:56:55 -2236.418314] SLOW spr round 25 (radius: 5) [09:57:25 -2236.418295] SLOW spr round 26 (radius: 10) [09:57:56 -2231.654953] SLOW spr round 27 (radius: 5) [09:58:27 -2231.654948] SLOW spr round 28 (radius: 10) [09:58:58 -2231.654945] SLOW spr round 29 (radius: 15) [09:59:30 -2217.370876] SLOW spr round 30 (radius: 5) [10:00:03 -2217.097665] SLOW spr round 31 (radius: 5) [10:00:34 -2216.933042] SLOW spr round 32 (radius: 5) [10:01:04 -2216.933039] SLOW spr round 33 (radius: 10) [10:01:35 -2207.277387] SLOW spr round 34 (radius: 5) [10:02:06 -2203.962397] SLOW spr round 35 (radius: 5) [10:02:36 -2203.962391] SLOW spr round 36 (radius: 10) [10:03:07 -2194.570391] SLOW spr round 37 (radius: 5) [10:03:38 -2194.568710] SLOW spr round 38 (radius: 10) [10:04:09 -2193.751127] SLOW spr round 39 (radius: 5) [10:04:39 -2193.751112] SLOW spr round 40 (radius: 10) [10:05:10 -2193.751110] SLOW spr round 41 (radius: 15) [10:05:43 -2192.953694] SLOW spr round 42 (radius: 5) [10:06:15 -2192.953663] SLOW spr round 43 (radius: 10) [10:06:46 -2192.953661] SLOW spr round 44 (radius: 15) [10:07:19 -2192.152285] SLOW spr round 45 (radius: 5) [10:07:51 -2192.152271] SLOW spr round 46 (radius: 10) [10:08:22 -2192.152270] SLOW spr round 47 (radius: 15) [10:08:54 -2192.152268] SLOW spr round 48 (radius: 20) [10:09:30 -2183.057244] SLOW spr round 49 (radius: 5) [10:10:04 -2168.164741] SLOW spr round 50 (radius: 5) [10:10:35 -2168.164726] SLOW spr round 51 (radius: 10) [10:11:06 -2167.517881] SLOW spr round 52 (radius: 5) [10:11:36 -2167.517879] SLOW spr round 53 (radius: 10) [10:12:07 -2167.517877] SLOW spr round 54 (radius: 15) [10:12:39 -2166.589430] SLOW spr round 55 (radius: 5) [10:13:11 -2166.589425] SLOW spr round 56 (radius: 10) [10:13:43 -2164.899639] SLOW spr round 57 (radius: 5) [10:14:13 -2164.896609] SLOW spr round 58 (radius: 10) [10:14:44 -2164.896588] SLOW spr round 59 (radius: 15) [10:15:16 -2164.896570] SLOW spr round 60 (radius: 20) [10:15:52 -2164.896553] SLOW spr round 61 (radius: 25) [10:16:31 -2162.727068] SLOW spr round 62 (radius: 5) [10:17:04 -2162.626497] SLOW spr round 63 (radius: 5) [10:17:35 -2162.626489] SLOW spr round 64 (radius: 10) [10:18:05 -2162.626480] SLOW spr round 65 (radius: 15) [10:18:37 -2162.626473] SLOW spr round 66 (radius: 20) [10:19:14 -2162.626465] SLOW spr round 67 (radius: 25) [10:19:52 -2162.626457] Model parameter optimization (eps = 0.100000) [10:19:57] ML tree search #18, logLikelihood: -2162.436462 [10:19:57 -8192.667820] Initial branch length optimization [10:19:57 -6772.410954] Model parameter optimization (eps = 10.000000) [10:20:09 -6641.444119] AUTODETECT spr round 1 (radius: 5) [10:20:36 -4630.176750] AUTODETECT spr round 2 (radius: 10) [10:21:06 -3506.949008] AUTODETECT spr round 3 (radius: 15) [10:21:40 -2948.722845] AUTODETECT spr round 4 (radius: 20) [10:22:14 -2526.135803] AUTODETECT spr round 5 (radius: 25) [10:22:51 -2448.470621] SPR radius for FAST iterations: 25 (autodetect) [10:22:51 -2448.470621] Model parameter optimization (eps = 3.000000) [10:22:56 -2443.436506] FAST spr round 1 (radius: 25) [10:23:26 -2174.740354] FAST spr round 2 (radius: 25) [10:23:56 -2147.745395] FAST spr round 3 (radius: 25) [10:24:26 -2138.046800] FAST spr round 4 (radius: 25) [10:24:56 -2136.466229] FAST spr round 5 (radius: 25) [10:25:25 -2136.466146] Model parameter optimization (eps = 1.000000) [10:25:27 -2136.448130] SLOW spr round 1 (radius: 5) [10:25:58 -2136.139914] SLOW spr round 2 (radius: 5) [10:26:28 -2135.682898] SLOW spr round 3 (radius: 5) [10:26:58 -2134.207791] SLOW spr round 4 (radius: 5) [10:27:28 -2134.207789] SLOW spr round 5 (radius: 10) [10:28:00 -2127.603665] SLOW spr round 6 (radius: 5) [10:28:31 -2127.603589] SLOW spr round 7 (radius: 10) [10:29:02 -2127.603588] SLOW spr round 8 (radius: 15) [10:29:37 -2118.142984] SLOW spr round 9 (radius: 5) [10:30:11 -2117.924274] SLOW spr round 10 (radius: 5) [10:30:41 -2117.924274] SLOW spr round 11 (radius: 10) [10:31:12 -2117.924274] SLOW spr round 12 (radius: 15) [10:31:47 -2114.208330] SLOW spr round 13 (radius: 5) [10:32:21 -2114.206399] SLOW spr round 14 (radius: 10) [10:32:52 -2114.206379] SLOW spr round 15 (radius: 15) [10:33:26 -2114.206379] SLOW spr round 16 (radius: 20) [10:34:07 -2102.831019] SLOW spr round 17 (radius: 5) [10:34:40 -2100.912683] SLOW spr round 18 (radius: 5) [10:35:11 -2100.912683] SLOW spr round 19 (radius: 10) [10:35:42 -2099.980962] SLOW spr round 20 (radius: 5) [10:36:13 -2099.364346] SLOW spr round 21 (radius: 5) [10:36:43 -2099.364342] SLOW spr round 22 (radius: 10) [10:37:14 -2099.364342] SLOW spr round 23 (radius: 15) [10:37:49 -2099.364342] SLOW spr round 24 (radius: 20) [10:38:29 -2094.710957] SLOW spr round 25 (radius: 5) [10:39:02 -2094.710955] SLOW spr round 26 (radius: 10) [10:39:34 -2094.710955] SLOW spr round 27 (radius: 15) [10:40:08 -2094.710955] SLOW spr round 28 (radius: 20) [10:40:48 -2094.710955] SLOW spr round 29 (radius: 25) [10:41:32 -2082.324427] SLOW spr round 30 (radius: 5) [10:42:06 -2079.312492] SLOW spr round 31 (radius: 5) [10:42:37 -2079.312471] SLOW spr round 32 (radius: 10) [10:43:08 -2079.312471] SLOW spr round 33 (radius: 15) [10:43:43 -2079.312471] SLOW spr round 34 (radius: 20) [10:44:27 -2077.946652] SLOW spr round 35 (radius: 5) [10:45:01 -2077.946154] SLOW spr round 36 (radius: 10) [10:45:33 -2077.946153] SLOW spr round 37 (radius: 15) [10:46:07 -2077.946153] SLOW spr round 38 (radius: 20) [10:46:49 -2077.943483] SLOW spr round 39 (radius: 25) [10:47:36 -2071.468374] SLOW spr round 40 (radius: 5) [10:48:11 -2068.834691] SLOW spr round 41 (radius: 5) [10:48:42 -2068.155348] SLOW spr round 42 (radius: 5) [10:49:12 -2068.155348] SLOW spr round 43 (radius: 10) [10:49:43 -2068.155348] SLOW spr round 44 (radius: 15) [10:50:18 -2041.342041] SLOW spr round 45 (radius: 5) [10:50:51 -2041.342023] SLOW spr round 46 (radius: 10) [10:51:22 -2041.342023] SLOW spr round 47 (radius: 15) [10:51:57 -2040.018725] SLOW spr round 48 (radius: 5) [10:52:30 -2040.018725] SLOW spr round 49 (radius: 10) [10:53:02 -2040.018725] SLOW spr round 50 (radius: 15) [10:53:37 -2040.018725] SLOW spr round 51 (radius: 20) [10:54:19 -2026.883790] SLOW spr round 52 (radius: 5) [10:54:53 -2022.688167] SLOW spr round 53 (radius: 5) [10:55:24 -2022.688167] SLOW spr round 54 (radius: 10) [10:55:56 -2022.684393] SLOW spr round 55 (radius: 15) [10:56:30 -2022.684344] SLOW spr round 56 (radius: 20) [10:57:12 -2022.684343] SLOW spr round 57 (radius: 25) [10:57:57 -2017.217978] SLOW spr round 58 (radius: 5) [10:58:32 -2015.985118] SLOW spr round 59 (radius: 5) [10:59:03 -2015.985118] SLOW spr round 60 (radius: 10) [10:59:34 -2015.985118] SLOW spr round 61 (radius: 15) [11:00:08 -2015.985118] SLOW spr round 62 (radius: 20) [11:00:50 -2015.985118] SLOW spr round 63 (radius: 25) [11:01:35 -2015.985118] Model parameter optimization (eps = 0.100000) [11:01:37] ML tree search #19, logLikelihood: -2015.889927 [11:01:37 -8214.608391] Initial branch length optimization [11:01:37 -6826.889224] Model parameter optimization (eps = 10.000000) [11:01:46 -6690.302455] AUTODETECT spr round 1 (radius: 5) [11:02:13 -4664.893092] AUTODETECT spr round 2 (radius: 10) [11:02:44 -3433.468004] AUTODETECT spr round 3 (radius: 15) [11:03:17 -2829.418472] AUTODETECT spr round 4 (radius: 20) [11:03:52 -2575.670103] AUTODETECT spr round 5 (radius: 25) [11:04:29 -2449.928289] SPR radius for FAST iterations: 25 (autodetect) [11:04:29 -2449.928289] Model parameter optimization (eps = 3.000000) [11:04:34 -2440.844345] FAST spr round 1 (radius: 25) [11:05:05 -2108.935794] FAST spr round 2 (radius: 25) [11:05:35 -2068.064726] FAST spr round 3 (radius: 25) [11:06:05 -2067.953636] FAST spr round 4 (radius: 25) [11:06:33 -2067.953507] Model parameter optimization (eps = 1.000000) [11:06:35 -2067.875665] SLOW spr round 1 (radius: 5) [11:07:06 -2066.564064] SLOW spr round 2 (radius: 5) [11:07:36 -2066.531767] SLOW spr round 3 (radius: 10) [11:08:08 -2060.408070] SLOW spr round 4 (radius: 5) [11:08:39 -2060.004096] SLOW spr round 5 (radius: 5) [11:09:10 -2060.004096] SLOW spr round 6 (radius: 10) [11:09:42 -2056.624057] SLOW spr round 7 (radius: 5) [11:10:13 -2056.624051] SLOW spr round 8 (radius: 10) [11:10:45 -2050.568103] SLOW spr round 9 (radius: 5) [11:11:16 -2050.568101] SLOW spr round 10 (radius: 10) [11:11:47 -2050.568101] SLOW spr round 11 (radius: 15) [11:12:23 -2007.925307] SLOW spr round 12 (radius: 5) [11:12:56 -1994.696127] SLOW spr round 13 (radius: 5) [11:13:27 -1993.037215] SLOW spr round 14 (radius: 5) [11:13:57 -1993.037215] SLOW spr round 15 (radius: 10) [11:14:29 -1990.037853] SLOW spr round 16 (radius: 5) [11:15:00 -1985.130320] SLOW spr round 17 (radius: 5) [11:15:31 -1984.015562] SLOW spr round 18 (radius: 5) [11:16:01 -1984.015558] SLOW spr round 19 (radius: 10) [11:16:32 -1984.015558] SLOW spr round 20 (radius: 15) [11:17:08 -1984.015558] SLOW spr round 21 (radius: 20) [11:17:53 -1968.583354] SLOW spr round 22 (radius: 5) [11:18:28 -1966.733839] SLOW spr round 23 (radius: 5) [11:18:59 -1966.522754] SLOW spr round 24 (radius: 5) [11:19:29 -1966.522679] SLOW spr round 25 (radius: 10) [11:20:01 -1966.522677] SLOW spr round 26 (radius: 15) [11:20:36 -1965.880836] SLOW spr round 27 (radius: 5) [11:21:10 -1965.880836] SLOW spr round 28 (radius: 10) [11:21:41 -1965.880836] SLOW spr round 29 (radius: 15) [11:22:17 -1965.880836] SLOW spr round 30 (radius: 20) [11:23:01 -1965.880835] SLOW spr round 31 (radius: 25) [11:23:47 -1943.945208] SLOW spr round 32 (radius: 5) [11:24:22 -1937.191278] SLOW spr round 33 (radius: 5) [11:24:53 -1937.191269] SLOW spr round 34 (radius: 10) [11:25:25 -1936.735194] SLOW spr round 35 (radius: 5) [11:25:56 -1936.735194] SLOW spr round 36 (radius: 10) [11:26:27 -1936.735194] SLOW spr round 37 (radius: 15) [11:27:03 -1936.540689] SLOW spr round 38 (radius: 5) [11:27:36 -1930.436393] SLOW spr round 39 (radius: 5) [11:28:07 -1930.436393] SLOW spr round 40 (radius: 10) [11:28:38 -1930.436393] SLOW spr round 41 (radius: 15) [11:29:13 -1930.436393] SLOW spr round 42 (radius: 20) [11:29:57 -1928.537471] SLOW spr round 43 (radius: 5) [11:30:31 -1928.537471] SLOW spr round 44 (radius: 10) [11:31:03 -1925.465869] SLOW spr round 45 (radius: 5) [11:31:34 -1925.465869] SLOW spr round 46 (radius: 10) [11:32:06 -1925.465869] SLOW spr round 47 (radius: 15) [11:32:42 -1925.465869] SLOW spr round 48 (radius: 20) [11:33:25 -1925.465869] SLOW spr round 49 (radius: 25) [11:34:11 -1923.467792] SLOW spr round 50 (radius: 5) [11:34:45 -1923.467792] SLOW spr round 51 (radius: 10) [11:35:18 -1923.261907] SLOW spr round 52 (radius: 5) [11:35:49 -1923.261907] SLOW spr round 53 (radius: 10) [11:36:20 -1923.261907] SLOW spr round 54 (radius: 15) [11:36:56 -1923.261907] SLOW spr round 55 (radius: 20) [11:37:40 -1923.261907] SLOW spr round 56 (radius: 25) [11:38:25 -1923.261907] Model parameter optimization (eps = 0.100000) [11:38:28] ML tree search #20, logLikelihood: -1923.117774 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.293838,0.233580) (0.411759,0.383305) (0.294109,2.625244) (0.000294,4.859480) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -1923.117774 AIC score: 6764.235547 / AICc score: 4267044.235547 / BIC score: 7979.893816 Free parameters (model + branch lengths): 1459 WARNING: Number of free parameters (K=1459) is larger than alignment size (n=17). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 530 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O14672/3_mltree/O14672.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O14672/3_mltree/O14672.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O14672/3_mltree/O14672.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O14672/3_mltree/O14672.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O14672/3_mltree/O14672.raxml.log Analysis started: 03-Jul-2021 15:04:56 / finished: 04-Jul-2021 02:43:24 Elapsed time: 41908.689 seconds