RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 07-Jul-2021 16:56:12 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O14497/2_msa/O14497_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O14497/3_mltree/O14497 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O14497/2_msa/O14497_trimmed_msa.fasta [00:00:00] Loaded alignment with 644 taxa and 103 sites WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and sp_Q24573_DRI_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and tr_B4J7C8_B4J7C8_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and tr_B4I8R0_B4I8R0_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and tr_A0A0R3NNF4_A0A0R3NNF4_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and tr_B4NMM1_B4NMM1_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and tr_A0A0P8XNX3_A0A0P8XNX3_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and tr_B4GHU8_B4GHU8_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and tr_B4LLY0_B4LLY0_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and tr_B4KS05_B4KS05_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and tr_A0A0L0C9N2_A0A0L0C9N2_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and tr_A0A0M4EV64_A0A0M4EV64_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QAW8_B4QAW8_DROSI_7240 and tr_A0A1W4ULN7_A0A1W4ULN7_DROFC_30025 are exactly identical! WARNING: Sequences sp_A2BEA6_ARI3A_DANRE_7955 and tr_A0A3B1JIW7_A0A3B1JIW7_ASTMX_7994 are exactly identical! WARNING: Sequences sp_A2BEA6_ARI3A_DANRE_7955 and tr_W5MI36_W5MI36_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_H9H1L5_H9H1L5_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_K7GH09_K7GH09_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_U3ITJ4_U3ITJ4_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_A0A0Q3XA70_A0A0Q3XA70_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_A0A091JGF7_A0A091JGF7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_A0A091VJY3_A0A091VJY3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_A0A087QW69_A0A087QW69_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_A0A093HU40_A0A093HU40_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_A0A0A0ADA0_A0A0A0ADA0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_A0A091IEY4_A0A091IEY4_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_A0A226MKR2_A0A226MKR2_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5NZ44_A0A1D5NZ44_CHICK_9031 and tr_A0A226P5T7_A0A226P5T7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PJW5_A0A1D5PJW5_CHICK_9031 and tr_G1MWP3_G1MWP3_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PJW5_A0A1D5PJW5_CHICK_9031 and tr_A0A2I0LGQ5_A0A2I0LGQ5_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PJW5_A0A1D5PJW5_CHICK_9031 and tr_A0A1V4JTB0_A0A1V4JTB0_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PJW5_A0A1D5PJW5_CHICK_9031 and tr_A0A226N8G2_A0A226N8G2_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PJW5_A0A1D5PJW5_CHICK_9031 and tr_A0A226PGM0_A0A226PGM0_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_M3Z0R8_M3Z0R8_MUSPF_9669 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_G1MV17_G1MV17_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_F7FNT3_F7FNT3_MONDO_13616 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A287D7F4_A0A287D7F4_ICTTR_43179 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_K7FRL9_K7FRL9_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_H0Z0Q1_H0Z0Q1_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_U3IP61_U3IP61_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A091E3Q4_A0A091E3Q4_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A151MAK9_A0A151MAK9_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A0Q3P3G0_A0A0Q3P3G0_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A091F970_A0A091F970_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A093PH77_A0A093PH77_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A087R1A4_A0A087R1A4_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A091XEM2_A0A091XEM2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A099ZUI9_A0A099ZUI9_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A2I0M6T5_A0A2I0M6T5_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A3Q0G7L1_A0A3Q0G7L1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A1V4JD52_A0A1V4JD52_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NL47_F1NL47_CHICK_9031 and tr_A0A226PPI7_A0A226PPI7_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_G1NJH9_G1NJH9_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_U3IJ13_U3IJ13_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A151M291_A0A151M291_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A0Q3MBG3_A0A0Q3MBG3_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A091F1J7_A0A091F1J7_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A091K9R0_A0A091K9R0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A093QPR5_A0A093QPR5_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A091UUG4_A0A091UUG4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A087R670_A0A087R670_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A093I8X8_A0A093I8X8_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A091XF56_A0A091XF56_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A091FMB6_A0A091FMB6_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A0A0ANA6_A0A0A0ANA6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A2I0MTM9_A0A2I0MTM9_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A093GU22_A0A093GU22_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A091I3V9_A0A091I3V9_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A3Q0GFM4_A0A3Q0GFM4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A1V4JLA5_A0A1V4JLA5_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1P479_F1P479_CHICK_9031 and tr_A0A226PWH1_A0A226PWH1_COLVI_9014 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_M3YW55_M3YW55_MUSPF_9669 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2I3HV62_A0A2I3HV62_NOMLE_61853 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_G1NY00_G1NY00_MYOLU_59463 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_G3HYQ4_G3HYQ4_CRIGR_10029 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2I2YHR1_A0A2I2YHR1_GORGO_9595 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_H2N8F1_H2N8F1_PONAB_9601 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_G1SNP1_G1SNP1_RABIT_9986 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_E2RSH9_E2RSH9_CANLF_9615 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_K6ZTZ3_K6ZTZ3_PANTR_9598 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_F7AAM8_F7AAM8_HORSE_9796 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_W5P2D7_W5P2D7_SHEEP_9940 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_D4A3E3_D4A3E3_RAT_10116 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A287D141_A0A287D141_ICTTR_43179 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_H0WKR8_H0WKR8_OTOGA_30611 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_H0VGS4_H0VGS4_CAVPO_10141 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and sp_O14497_ARI1A_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_F7DX53_F7DX53_MACMU_9544 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_G5AUR9_G5AUR9_HETGA_10181 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_G3TJ68_G3TJ68_LOXAF_9785 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_F7HBY9_F7HBY9_CALJA_9483 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A287ASP4_A0A287ASP4_PIG_9823 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_G1LW62_G1LW62_AILME_9646 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_G8F2H2_G8F2H2_MACFA_9541 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_E1B925_E1B925_BOVIN_9913 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_L5JRX8_L5JRX8_PTEAL_9402 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A337SEE5_A0A337SEE5_FELCA_9685 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A096MMA0_A0A096MMA0_PAPAN_9555 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A091E049_A0A091E049_FUKDA_885580 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A0D9S841_A0A0D9S841_CHLSB_60711 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A1S3ABW4_A0A1S3ABW4_ERIEU_9365 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A1S3GME7_A0A1S3GME7_DIPOR_10020 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A3Q0EB10_A0A3Q0EB10_TARSY_1868482 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A3Q0D1W4_A0A3Q0D1W4_MESAU_10036 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2K5MG00_A0A2K5MG00_CERAT_9531 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2K6D987_A0A2K6D987_MACNE_9545 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2K5XPG7_A0A2K5XPG7_MANLE_9568 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2R9B3Y7_A0A2R9B3Y7_PANPA_9597 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2U3VJ52_A0A2U3VJ52_ODORO_9708 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2U3Y7N3_A0A2U3Y7N3_LEPWE_9713 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2Y9DM72_A0A2Y9DM72_TRIMA_127582 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2Y9KMP6_A0A2Y9KMP6_ENHLU_391180 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2Y9LCY1_A0A2Y9LCY1_DELLE_9749 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A2Y9SWX2_A0A2Y9SWX2_PHYCD_9755 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A384CEA0_A0A384CEA0_URSMA_29073 are exactly identical! WARNING: Sequences sp_A2BH40_ARI1A_MOUSE_10090 and tr_A0A383Z649_A0A383Z649_BALAS_310752 are exactly identical! WARNING: Sequences sp_E9Q4N7_ARI1B_MOUSE_10090 and tr_A0A1S3G0W3_A0A1S3G0W3_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q62431_ARI3A_MOUSE_10090 and tr_G3HF54_G3HF54_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q62431_ARI3A_MOUSE_10090 and tr_B5DEX9_B5DEX9_RAT_10116 are exactly identical! WARNING: Sequences sp_Q62431_ARI3A_MOUSE_10090 and tr_A0A1U8CIT9_A0A1U8CIT9_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9Z1N7_ARI3B_MOUSE_10090 and tr_G1PME3_G1PME3_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q9Z1N7_ARI3B_MOUSE_10090 and tr_E2RFI5_E2RFI5_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q9Z1N7_ARI3B_MOUSE_10090 and tr_D3ZGC2_D3ZGC2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9Z1N7_ARI3B_MOUSE_10090 and tr_H0XB74_H0XB74_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q9Z1N7_ARI3B_MOUSE_10090 and tr_G5BRG7_G5BRG7_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9Z1N7_ARI3B_MOUSE_10090 and tr_L5JZ38_L5JZ38_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_G1QY63_G1QY63_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_G3QKA1_G3QKA1_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_H2PUL5_H2PUL5_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_E2RGA0_E2RGA0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_H2R6Q2_H2R6Q2_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_W5PHE7_W5PHE7_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_D3ZQB1_D3ZQB1_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_I3M163_I3M163_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_H0WY25_H0WY25_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_H0UWG2_H0UWG2_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and sp_A6NKF2_ARI3C_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_G3TJT0_G3TJT0_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_F6V7K6_F6V7K6_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_G1M7P9_G1M7P9_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_F1MGP2_F1MGP2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_L5KBZ7_L5KBZ7_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_M3VZT8_M3VZT8_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_A0A091DW81_A0A091DW81_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_A0A1S2ZQG3_A0A1S2ZQG3_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_A0A3Q0EE22_A0A3Q0EE22_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_A0A1U7QH83_A0A1U7QH83_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_A0A2R9BT85_A0A2R9BT85_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_A0A2Y9DDH6_A0A2Y9DDH6_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_A0A2Y9LJN9_A0A2Y9LJN9_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_A0A2Y9EER2_A0A2Y9EER2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XYT9_M3XYT9_MUSPF_9669 and tr_A0A384CES2_A0A384CES2_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_G3HFW3_G3HFW3_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_G3R7T7_G3R7T7_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_H2PKP8_H2PKP8_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_G1SW33_G1SW33_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_F1PBJ5_F1PBJ5_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2I3SSA4_A0A2I3SSA4_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_F7DSY4_F7DSY4_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_W5P297_W5P297_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_I3MQQ2_I3MQQ2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A286XMM8_A0A286XMM8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and sp_Q8NFD5_ARI1B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_F7B475_F7B475_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_G5B2S6_G5B2S6_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_G3T8M1_G3T8M1_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2R8MTT2_A0A2R8MTT2_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_G1LT42_G1LT42_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_G7P4W9_G7P4W9_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_F1MKU0_F1MKU0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A096NRF4_A0A096NRF4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A091EBZ6_A0A091EBZ6_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A0D9RLB0_A0A0D9RLB0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2K5MUF9_A0A2K5MUF9_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2K6AYW4_A0A2K6AYW4_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2K5ZI37_A0A2K5ZI37_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2R9A4S0_A0A2R9A4S0_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2U4CNK0_A0A2U4CNK0_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2U3ZJ78_A0A2U3ZJ78_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2Y9QRF2_A0A2Y9QRF2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2Y9KSF0_A0A2Y9KSF0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2Y9M9M1_A0A2Y9M9M1_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A2Y9SPR4_A0A2Y9SPR4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A384BVX3_A0A384BVX3_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y207_M3Y207_MUSPF_9669 and tr_A0A384AFT2_A0A384AFT2_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_G1PIT7_G1PIT7_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_H2NWS1_H2NWS1_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_F1PDC9_F1PDC9_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_H2Q9S7_H2Q9S7_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_H0X9K7_H0X9K7_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and sp_Q99856_ARI3A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_F7B3V4_F7B3V4_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_G3SWL3_G3SWL3_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_F1S6T2_F1S6T2_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_G1L8H6_G1L8H6_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_L5L7P4_L5L7P4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_M3X878_M3X878_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A0A0MVI2_A0A0A0MVI2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A0D9RJD5_A0A0D9RJD5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A2K5MN46_A0A2K5MN46_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A2K6DWK3_A0A2K6DWK3_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A2K6AF58_A0A2K6AF58_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A2R9CAH2_A0A2R9CAH2_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A2U3VKN7_A0A2U3VKN7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A2U3YAU4_A0A2U3YAU4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A2Y9DR49_A0A2Y9DR49_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A2Y9LID1_A0A2Y9LID1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A2Y9MK51_A0A2Y9MK51_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A2Y9TL23_A0A2Y9TL23_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YD17_M3YD17_MUSPF_9669 and tr_A0A383ZNS3_A0A383ZNS3_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q8IN94_OSA_DROME_7227 and tr_B4IBE1_B4IBE1_DROSE_7238 are exactly identical! WARNING: Sequences sp_Q8IN94_OSA_DROME_7227 and tr_A0A0P8XD68_A0A0P8XD68_DROAN_7217 are exactly identical! WARNING: Sequences sp_Q8IN94_OSA_DROME_7227 and tr_A0A1W4US52_A0A1W4US52_DROFC_30025 are exactly identical! WARNING: Sequences tr_H2MIN1_H2MIN1_ORYLA_8090 and tr_A0A2U9BD68_A0A2U9BD68_SCOMX_52904 are exactly identical! WARNING: Sequences tr_G1PIB0_G1PIB0_MYOLU_59463 and tr_L5KEF3_L5KEF3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_H2NNR8_H2NNR8_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_H2R0M8_H2R0M8_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_F6R1V7_F6R1V7_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_H0VMI3_H0VMI3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and sp_Q8IVW6_ARI3B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_F7G1I5_F7G1I5_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_F7FW43_F7FW43_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_D2HKY8_D2HKY8_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_G7P940_G7P940_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_M3VXQ7_M3VXQ7_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_A0A096NMR0_A0A096NMR0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_A0A0D9RP25_A0A0D9RP25_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_A0A1U7UB26_A0A1U7UB26_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_A0A1U7QCT4_A0A1U7QCT4_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_A0A2K5NEM3_A0A2K5NEM3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_A0A2K6E6K0_A0A2K6E6K0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_A0A2K5YBS6_A0A2K5YBS6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_A0A2U3ZNB6_A0A2U3ZNB6_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_A0A2Y9FW68_A0A2Y9FW68_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_A0A2Y9K863_A0A2Y9K863_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I2Z6S9_A0A2I2Z6S9_GORGO_9595 and tr_A0A384DIM3_A0A384DIM3_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1SD51_G1SD51_RABIT_9986 and tr_A0A1S3FZP4_A0A1S3FZP4_DIPOR_10020 are exactly identical! WARNING: Sequences sp_O02326_CFI1_CAEEL_6239 and tr_G0MFJ4_G0MFJ4_CAEBE_135651 are exactly identical! WARNING: Sequences sp_O02326_CFI1_CAEEL_6239 and tr_G0P1T5_G0P1T5_CAEBE_135651 are exactly identical! WARNING: Sequences sp_O02326_CFI1_CAEEL_6239 and tr_E3M360_E3M360_CAERE_31234 are exactly identical! WARNING: Sequences sp_O02326_CFI1_CAEEL_6239 and tr_A8WWQ1_A8WWQ1_CAEBR_6238 are exactly identical! WARNING: Sequences sp_O02326_CFI1_CAEEL_6239 and tr_A0A1I7TQZ3_A0A1I7TQZ3_9PELO_1561998 are exactly identical! WARNING: Sequences sp_O02326_CFI1_CAEEL_6239 and tr_A0A1I7TQZ4_A0A1I7TQZ4_9PELO_1561998 are exactly identical! WARNING: Sequences sp_O02326_CFI1_CAEEL_6239 and tr_A0A261B4I1_A0A261B4I1_9PELO_1503980 are exactly identical! WARNING: Sequences sp_O02326_CFI1_CAEEL_6239 and tr_A0A2G5VFL1_A0A2G5VFL1_9PELO_1611254 are exactly identical! WARNING: Sequences tr_F6T7C8_F6T7C8_MONDO_13616 and tr_G3WJS9_G3WJS9_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6T7C8_F6T7C8_MONDO_13616 and tr_A0A2I0LLT0_A0A2I0LLT0_COLLI_8932 are exactly identical! WARNING: Sequences tr_F6T7C8_F6T7C8_MONDO_13616 and tr_A0A1V4JCJ2_A0A1V4JCJ2_PATFA_372326 are exactly identical! WARNING: Sequences tr_F6YJT2_F6YJT2_MONDO_13616 and tr_G3X045_G3X045_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5P065_W5P065_SHEEP_9940 and tr_E1BI80_E1BI80_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P065_W5P065_SHEEP_9940 and tr_A0A2Y9NKU0_A0A2Y9NKU0_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5P065_W5P065_SHEEP_9940 and tr_A0A2Y9F3H9_A0A2Y9F3H9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5P065_W5P065_SHEEP_9940 and tr_A0A384BDK0_A0A384BDK0_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5PK93_W5PK93_SHEEP_9940 and tr_E1BGZ3_E1BGZ3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M4AC79_M4AC79_XIPMA_8083 and tr_A0A087X920_A0A087X920_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AQT8_M4AQT8_XIPMA_8083 and tr_A0A087YBS2_A0A087YBS2_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088A113_A0A088A113_APIME_7460 and tr_A0A0L7QUM1_A0A0L7QUM1_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A088A113_A0A088A113_APIME_7460 and tr_A0A2A3ELC8_A0A2A3ELC8_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088AV42_A0A088AV42_APIME_7460 and tr_A0A154NZC1_A0A154NZC1_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A158NDX9_A0A158NDX9_ATTCE_12957 and tr_A0A151X4S7_A0A151X4S7_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NDX9_A0A158NDX9_ATTCE_12957 and tr_A0A195D7Y7_A0A195D7Y7_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NDX9_A0A158NDX9_ATTCE_12957 and tr_A0A195BQS3_A0A195BQS3_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NDX9_A0A158NDX9_ATTCE_12957 and tr_A0A195ESD6_A0A195ESD6_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NDX9_A0A158NDX9_ATTCE_12957 and tr_A0A195C4X9_A0A195C4X9_9HYME_456900 are exactly identical! WARNING: Sequences tr_I3K8R0_I3K8R0_ORENI_8128 and tr_A0A2U9BQI3_A0A2U9BQI3_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2SFH2_H2SFH2_TAKRU_31033 and tr_H3CMM2_H3CMM2_TETNG_99883 are exactly identical! WARNING: Sequences tr_H0VK27_H0VK27_CAVPO_10141 and tr_G5C5X9_G5C5X9_HETGA_10181 are exactly identical! WARNING: Sequences tr_H0VK27_H0VK27_CAVPO_10141 and tr_A0A1S3FNA0_A0A1S3FNA0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_E5SR55_E5SR55_TRISP_6334 and tr_A0A0V0S8N0_A0A0V0S8N0_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SR55_E5SR55_TRISP_6334 and tr_A0A0V1DCV7_A0A0V1DCV7_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SR55_E5SR55_TRISP_6334 and tr_A0A0V0VCB9_A0A0V0VCB9_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SR55_E5SR55_TRISP_6334 and tr_A0A0V1AAU3_A0A0V1AAU3_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SR55_E5SR55_TRISP_6334 and tr_A0A0V1MCJ2_A0A0V1MCJ2_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SR55_E5SR55_TRISP_6334 and tr_A0A0V1PMJ8_A0A0V1PMJ8_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SR55_E5SR55_TRISP_6334 and tr_A0A0V1H922_A0A0V1H922_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5SR55_E5SR55_TRISP_6334 and tr_A0A0V0TZA0_A0A0V0TZA0_9BILA_144512 are exactly identical! WARNING: Sequences tr_E5ST63_E5ST63_TRISP_6334 and tr_A0A0V0S182_A0A0V0S182_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5ST63_E5ST63_TRISP_6334 and tr_A0A0V0VSV9_A0A0V0VSV9_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5ST63_E5ST63_TRISP_6334 and tr_A0A0V1LI88_A0A0V1LI88_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5ST63_E5ST63_TRISP_6334 and tr_A0A0V0ZYP8_A0A0V0ZYP8_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5ST63_E5ST63_TRISP_6334 and tr_A0A0V0UHX0_A0A0V0UHX0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A7UT87_A7UT87_ANOGA_7165 and tr_A0A084W2F0_A0A084W2F0_ANOSI_74873 are exactly identical! WARNING: Sequences tr_G3NXQ1_G3NXQ1_GASAC_69293 and tr_A0A2U9BLE0_A0A2U9BLE0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H0YRW3_H0YRW3_TAEGU_59729 and tr_U3JC42_U3JC42_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0YRW3_H0YRW3_TAEGU_59729 and tr_A0A151NJT5_A0A151NJT5_ALLMI_8496 are exactly identical! WARNING: Sequences tr_H0YRW3_H0YRW3_TAEGU_59729 and tr_A0A093PVD9_A0A093PVD9_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0YRW3_H0YRW3_TAEGU_59729 and tr_A0A1U7R8T2_A0A1U7R8T2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_H0YRW3_H0YRW3_TAEGU_59729 and tr_A0A218UK74_A0A218UK74_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZLJ0_H0ZLJ0_TAEGU_59729 and tr_U3KDG9_U3KDG9_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZLJ0_H0ZLJ0_TAEGU_59729 and tr_A0A218UN23_A0A218UN23_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q5XGD9_ARI3A_XENTR_8364 and tr_A0A1L8HN87_A0A1L8HN87_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q5XGD9_ARI3A_XENTR_8364 and tr_A0A1L8HWP7_A0A1L8HWP7_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1SEC1_F1SEC1_PIG_9823 and tr_A0A2Y9J890_A0A2Y9J890_ENHLU_391180 are exactly identical! WARNING: Sequences tr_U3K5F6_U3K5F6_FICAL_59894 and tr_A0A091F7L6_A0A091F7L6_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3KHP4_U3KHP4_FICAL_59894 and tr_A0A218UGQ6_A0A218UGQ6_9PASE_299123 are exactly identical! WARNING: Sequences tr_W5M339_W5M339_LEPOC_7918 and tr_A0A1S3MNM2_A0A1S3MNM2_SALSA_8030 are exactly identical! WARNING: Sequences tr_W5M339_W5M339_LEPOC_7918 and tr_A0A1S3T4T5_A0A1S3T4T5_SALSA_8030 are exactly identical! WARNING: Sequences tr_W5M339_W5M339_LEPOC_7918 and tr_A0A060VSK5_A0A060VSK5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A087XA73_A0A087XA73_POEFO_48698 and tr_A0A2I4B4R7_A0A2I4B4R7_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A0K0FIA5_A0A0K0FIA5_STRVS_75913 and tr_A0A0K0E7R4_A0A0K0E7R4_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0FIA5_A0A0K0FIA5_STRVS_75913 and tr_A0A090MXB0_A0A090MXB0_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0K0FIA5_A0A0K0FIA5_STRVS_75913 and tr_A0A0N5CG97_A0A0N5CG97_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A158RDQ9_A0A158RDQ9_HYDTA_6205 and tr_A0A158R6S0_A0A158R6S0_TAEAS_60517 are exactly identical! WARNING: Sequences tr_A0A151P185_A0A151P185_ALLMI_8496 and tr_A0A1U8DQN2_A0A1U8DQN2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A183I271_A0A183I271_9BILA_387005 and tr_A0A182EJW8_A0A182EJW8_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0Q3MJ41_A0A0Q3MJ41_AMAAE_12930 and tr_A0A091FMP3_A0A091FMP3_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091JL64_A0A091JL64_EGRGA_188379 and tr_A0A093T0X3_A0A093T0X3_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091JL64_A0A091JL64_EGRGA_188379 and tr_A0A091URI1_A0A091URI1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JL64_A0A091JL64_EGRGA_188379 and tr_A0A087R669_A0A087R669_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JL64_A0A091JL64_EGRGA_188379 and tr_A0A091I779_A0A091I779_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091JPR5_A0A091JPR5_EGRGA_188379 and tr_A0A093Q6B3_A0A093Q6B3_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091JPR5_A0A091JPR5_EGRGA_188379 and tr_A0A091FTN3_A0A091FTN3_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A194RR89_A0A194RR89_PAPMA_76193 and tr_A0A194PNF9_A0A194PNF9_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A2I0LK44_A0A2I0LK44_COLLI_8932 and tr_A0A1V4KQ86_A0A1V4KQ86_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0WPW2_A0A0V0WPW2_9BILA_92179 and tr_A0A0V1LLG7_A0A0V1LLG7_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1N409_A0A0V1N409_9BILA_268474 and tr_A0A0V1HJB0_A0A0V1HJB0_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3KUA5_A0A1S3KUA5_SALSA_8030 and tr_A0A1S3PT11_A0A1S3PT11_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3M3N3_A0A1S3M3N3_SALSA_8030 and tr_A0A1S3Q1A5_A0A1S3Q1A5_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3M7Q7_A0A1S3M7Q7_SALSA_8030 and tr_A0A1S3M7R2_A0A1S3M7R2_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3PCG7_A0A1S3PCG7_SALSA_8030 and tr_A0A1S3RUY8_A0A1S3RUY8_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3PCG7_A0A1S3PCG7_SALSA_8030 and tr_A0A060WDN9_A0A060WDN9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PCG7_A0A1S3PCG7_SALSA_8030 and tr_A0A060YFT8_A0A060YFT8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3S7L9_A0A1S3S7L9_SALSA_8030 and tr_A0A060VWI6_A0A060VWI6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2A2KWS0_A0A2A2KWS0_9BILA_2018661 and tr_A0A2A2KYH6_A0A2A2KYH6_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2D0RN99_A0A2D0RN99_ICTPU_7998 and tr_A0A2D0RNU9_A0A2D0RNU9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RTI2_A0A2D0RTI2_ICTPU_7998 and tr_A0A2D0RTJ1_A0A2D0RTJ1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SFS5_A0A2D0SFS5_ICTPU_7998 and tr_A0A2D0SGH1_A0A2D0SGH1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3VCH8_A0A2U3VCH8_ODORO_9708 and tr_A0A2U3Y649_A0A2U3Y649_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 326 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O14497/3_mltree/O14497.raxml.reduced.phy Alignment comprises 1 partitions and 103 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 103 / 103 Gaps: 5.09 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O14497/3_mltree/O14497.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 644 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 103 / 8240 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -82709.225984] Initial branch length optimization [00:00:01 -61967.378997] Model parameter optimization (eps = 10.000000) [00:00:21 -61384.165190] AUTODETECT spr round 1 (radius: 5) [00:01:12 -31836.229286] AUTODETECT spr round 2 (radius: 10) [00:02:05 -19333.380704] AUTODETECT spr round 3 (radius: 15) [00:03:04 -14970.697286] AUTODETECT spr round 4 (radius: 20) [00:04:08 -12999.719790] AUTODETECT spr round 5 (radius: 25) [00:05:20 -12726.348166] SPR radius for FAST iterations: 25 (autodetect) [00:05:20 -12726.348166] Model parameter optimization (eps = 3.000000) [00:05:38 -12596.421649] FAST spr round 1 (radius: 25) [00:06:29 -10746.066034] FAST spr round 2 (radius: 25) [00:07:15 -10594.373159] FAST spr round 3 (radius: 25) [00:07:58 -10561.201532] FAST spr round 4 (radius: 25) [00:08:40 -10538.509788] FAST spr round 5 (radius: 25) [00:09:19 -10533.718686] FAST spr round 6 (radius: 25) [00:09:57 -10533.717857] Model parameter optimization (eps = 1.000000) [00:10:08 -10531.844784] SLOW spr round 1 (radius: 5) [00:10:54 -10526.772089] SLOW spr round 2 (radius: 5) [00:11:39 -10526.601981] SLOW spr round 3 (radius: 5) [00:12:22 -10526.601920] SLOW spr round 4 (radius: 10) [00:13:09 -10526.601884] SLOW spr round 5 (radius: 15) [00:14:17 -10525.508889] SLOW spr round 6 (radius: 5) [00:15:18 -10523.646496] SLOW spr round 7 (radius: 5) [00:16:10 -10523.645700] SLOW spr round 8 (radius: 10) [00:16:58 -10523.645629] SLOW spr round 9 (radius: 15) [00:18:03 -10523.645620] SLOW spr round 10 (radius: 20) [00:19:33 -10523.645617] SLOW spr round 11 (radius: 25) [00:21:31 -10523.645614] Model parameter optimization (eps = 0.100000) [00:21:38] [worker #0] ML tree search #1, logLikelihood: -10523.522972 [00:21:38 -81115.655104] Initial branch length optimization [00:21:40] [worker #1] ML tree search #2, logLikelihood: -10556.734239 [00:21:40 -61100.859471] Model parameter optimization (eps = 10.000000) [00:22:02 -60540.238112] AUTODETECT spr round 1 (radius: 5) [00:22:51 -30847.403402] AUTODETECT spr round 2 (radius: 10) [00:23:43 -19966.495588] AUTODETECT spr round 3 (radius: 15) [00:24:46 -14622.822441] AUTODETECT spr round 4 (radius: 20) [00:25:53 -12875.434185] AUTODETECT spr round 5 (radius: 25) [00:27:00 -12474.749921] SPR radius for FAST iterations: 25 (autodetect) [00:27:00 -12474.749921] Model parameter optimization (eps = 3.000000) [00:27:19 -12364.808360] FAST spr round 1 (radius: 25) [00:28:08 -10670.580765] FAST spr round 2 (radius: 25) [00:28:53 -10588.839467] FAST spr round 3 (radius: 25) [00:29:37 -10582.321371] FAST spr round 4 (radius: 25) [00:30:18 -10582.321177] Model parameter optimization (eps = 1.000000) [00:30:33 -10580.039514] SLOW spr round 1 (radius: 5) [00:31:22 -10576.084688] SLOW spr round 2 (radius: 5) [00:32:11 -10562.519978] SLOW spr round 3 (radius: 5) [00:32:58 -10561.847356] SLOW spr round 4 (radius: 5) [00:33:46 -10561.845376] SLOW spr round 5 (radius: 10) [00:34:36 -10561.532677] SLOW spr round 6 (radius: 5) [00:35:32 -10552.319155] SLOW spr round 7 (radius: 5) [00:36:23 -10548.293398] SLOW spr round 8 (radius: 5) [00:37:10 -10548.292591] SLOW spr round 9 (radius: 10) [00:37:59 -10548.292307] SLOW spr round 10 (radius: 15) [00:39:05 -10546.706348] SLOW spr round 11 (radius: 5) [00:40:05 -10546.706234] SLOW spr round 12 (radius: 10) [00:41:00 -10546.706141] SLOW spr round 13 (radius: 15) [00:42:02 -10546.706048] SLOW spr round 14 (radius: 20) [00:43:33 -10546.321908] SLOW spr round 15 (radius: 5) [00:44:34 -10546.321806] SLOW spr round 16 (radius: 10) [00:45:31 -10546.321704] SLOW spr round 17 (radius: 15) [00:46:34 -10546.321621] SLOW spr round 18 (radius: 20) [00:48:03 -10546.321542] SLOW spr round 19 (radius: 25) [00:49:48 -10546.321464] Model parameter optimization (eps = 0.100000) [00:49:54] [worker #0] ML tree search #3, logLikelihood: -10546.312056 [00:49:54 -84238.290920] Initial branch length optimization [00:49:55 -63762.249776] Model parameter optimization (eps = 10.000000) [00:50:26 -63237.098982] AUTODETECT spr round 1 (radius: 5) [00:51:17 -33544.761293] AUTODETECT spr round 2 (radius: 10) [00:52:11 -20999.744930] AUTODETECT spr round 3 (radius: 15) [00:53:12 -16179.399598] AUTODETECT spr round 4 (radius: 20) [00:54:17 -13271.480443] AUTODETECT spr round 5 (radius: 25) [00:55:25 -12582.763163] SPR radius for FAST iterations: 25 (autodetect) [00:55:25 -12582.763163] Model parameter optimization (eps = 3.000000) [00:55:43 -12486.515125] FAST spr round 1 (radius: 25) [00:56:03] [worker #1] ML tree search #4, logLikelihood: -10540.168681 [00:56:37 -10832.425937] FAST spr round 2 (radius: 25) [00:57:21 -10581.013096] FAST spr round 3 (radius: 25) [00:58:04 -10545.454805] FAST spr round 4 (radius: 25) [00:58:44 -10545.451819] Model parameter optimization (eps = 1.000000) [00:58:54 -10544.190780] SLOW spr round 1 (radius: 5) [00:59:41 -10540.828814] SLOW spr round 2 (radius: 5) [01:00:26 -10540.357087] SLOW spr round 3 (radius: 5) [01:01:10 -10540.356488] SLOW spr round 4 (radius: 10) [01:02:00 -10538.986818] SLOW spr round 5 (radius: 5) [01:02:57 -10537.808603] SLOW spr round 6 (radius: 5) [01:03:45 -10537.808147] SLOW spr round 7 (radius: 10) [01:04:36 -10535.270240] SLOW spr round 8 (radius: 5) [01:05:33 -10535.067116] SLOW spr round 9 (radius: 5) [01:06:22 -10535.066938] SLOW spr round 10 (radius: 10) [01:07:11 -10535.066910] SLOW spr round 11 (radius: 15) [01:08:21 -10535.066903] SLOW spr round 12 (radius: 20) [01:09:52 -10535.066898] SLOW spr round 13 (radius: 25) [01:11:43 -10533.854971] SLOW spr round 14 (radius: 5) [01:12:44 -10533.603818] SLOW spr round 15 (radius: 5) [01:13:37 -10533.603772] SLOW spr round 16 (radius: 10) [01:14:28 -10533.603763] SLOW spr round 17 (radius: 15) [01:15:36 -10533.603759] SLOW spr round 18 (radius: 20) [01:17:07 -10533.603755] SLOW spr round 19 (radius: 25) [01:18:59 -10533.603751] Model parameter optimization (eps = 0.100000) [01:19:06] [worker #0] ML tree search #5, logLikelihood: -10533.469032 [01:19:06 -82389.674473] Initial branch length optimization [01:19:07 -62293.483353] Model parameter optimization (eps = 10.000000) [01:19:34 -61779.809610] AUTODETECT spr round 1 (radius: 5) [01:20:25 -31315.493267] AUTODETECT spr round 2 (radius: 10) [01:21:17 -21364.464239] AUTODETECT spr round 3 (radius: 15) [01:22:20 -16086.162220] AUTODETECT spr round 4 (radius: 20) [01:23:24 -13662.611973] AUTODETECT spr round 5 (radius: 25) [01:24:33 -13183.782496] SPR radius for FAST iterations: 25 (autodetect) [01:24:33 -13183.782496] Model parameter optimization (eps = 3.000000) [01:24:57 -13108.246617] FAST spr round 1 (radius: 25) [01:25:49 -10871.494636] FAST spr round 2 (radius: 25) [01:26:36 -10635.909088] FAST spr round 3 (radius: 25) [01:27:20 -10621.591033] FAST spr round 4 (radius: 25) [01:28:03 -10618.478126] FAST spr round 5 (radius: 25) [01:28:45 -10612.006269] FAST spr round 6 (radius: 25) [01:29:27 -10610.978573] FAST spr round 7 (radius: 25) [01:30:08 -10610.978480] Model parameter optimization (eps = 1.000000) [01:30:15 -10610.225233] SLOW spr round 1 (radius: 5) [01:31:02 -10609.095090] SLOW spr round 2 (radius: 5) [01:31:48 -10609.094381] SLOW spr round 3 (radius: 10) [01:32:35] [worker #1] ML tree search #6, logLikelihood: -10537.691963 [01:32:41 -10608.575630] SLOW spr round 4 (radius: 5) [01:33:40 -10606.491878] SLOW spr round 5 (radius: 5) [01:34:32 -10605.071940] SLOW spr round 6 (radius: 5) [01:35:20 -10605.065845] SLOW spr round 7 (radius: 10) [01:36:11 -10605.065683] SLOW spr round 8 (radius: 15) [01:37:18 -10603.340424] SLOW spr round 9 (radius: 5) [01:38:19 -10603.340258] SLOW spr round 10 (radius: 10) [01:39:17 -10603.340211] SLOW spr round 11 (radius: 15) [01:40:22 -10603.340211] SLOW spr round 12 (radius: 20) [01:41:43 -10602.893631] SLOW spr round 13 (radius: 5) [01:42:44 -10602.892338] SLOW spr round 14 (radius: 10) [01:43:42 -10602.891428] SLOW spr round 15 (radius: 15) [01:44:46 -10602.891149] SLOW spr round 16 (radius: 20) [01:46:06 -10602.891145] SLOW spr round 17 (radius: 25) [01:47:49 -10584.474233] SLOW spr round 18 (radius: 5) [01:48:50 -10582.999146] SLOW spr round 19 (radius: 5) [01:49:44 -10582.565434] SLOW spr round 20 (radius: 5) [01:50:29 -10581.543196] SLOW spr round 21 (radius: 5) [01:51:12 -10581.542108] SLOW spr round 22 (radius: 10) [01:51:59 -10581.302593] SLOW spr round 23 (radius: 5) [01:52:52 -10581.302590] SLOW spr round 24 (radius: 10) [01:53:43 -10581.302587] SLOW spr round 25 (radius: 15) [01:54:48 -10581.117412] SLOW spr round 26 (radius: 5) [01:55:46 -10581.092170] SLOW spr round 27 (radius: 10) [01:56:41 -10581.092088] SLOW spr round 28 (radius: 15) [01:57:45 -10581.092073] SLOW spr round 29 (radius: 20) [01:59:12 -10578.290677] SLOW spr round 30 (radius: 5) [02:00:11 -10578.290610] SLOW spr round 31 (radius: 10) [02:01:06 -10577.084584] SLOW spr round 32 (radius: 5) [02:01:58 -10577.083650] SLOW spr round 33 (radius: 10) [02:02:49 -10577.081370] SLOW spr round 34 (radius: 15) [02:03:54 -10577.080976] SLOW spr round 35 (radius: 20) [02:05:18 -10576.604252] SLOW spr round 36 (radius: 5) [02:06:18 -10576.387317] SLOW spr round 37 (radius: 5) [02:07:08 -10576.386728] SLOW spr round 38 (radius: 10) [02:07:57 -10576.386644] SLOW spr round 39 (radius: 15) [02:09:02 -10576.386637] SLOW spr round 40 (radius: 20) [02:10:26 -10576.386636] SLOW spr round 41 (radius: 25) [02:12:13 -10576.386636] Model parameter optimization (eps = 0.100000) [02:12:22] [worker #0] ML tree search #7, logLikelihood: -10575.874088 [02:12:22 -85693.112727] Initial branch length optimization [02:12:23 -64169.184453] Model parameter optimization (eps = 10.000000) [02:13:00 -63651.688281] AUTODETECT spr round 1 (radius: 5) [02:13:50 -32479.491511] AUTODETECT spr round 2 (radius: 10) [02:14:41 -20791.767988] AUTODETECT spr round 3 (radius: 15) [02:15:40 -14260.245137] AUTODETECT spr round 4 (radius: 20) [02:16:52 -12423.716736] AUTODETECT spr round 5 (radius: 25) [02:16:59] [worker #1] ML tree search #8, logLikelihood: -10535.026065 [02:18:04 -12201.994818] SPR radius for FAST iterations: 25 (autodetect) [02:18:04 -12201.994818] Model parameter optimization (eps = 3.000000) [02:18:22 -12097.155168] FAST spr round 1 (radius: 25) [02:19:17 -10697.409831] FAST spr round 2 (radius: 25) [02:20:04 -10564.705630] FAST spr round 3 (radius: 25) [02:20:48 -10553.158747] FAST spr round 4 (radius: 25) [02:21:28 -10548.282644] FAST spr round 5 (radius: 25) [02:22:07 -10548.281975] Model parameter optimization (eps = 1.000000) [02:22:22 -10546.591836] SLOW spr round 1 (radius: 5) [02:23:10 -10540.515894] SLOW spr round 2 (radius: 5) [02:23:57 -10539.937318] SLOW spr round 3 (radius: 5) [02:24:41 -10539.355690] SLOW spr round 4 (radius: 5) [02:25:26 -10539.355449] SLOW spr round 5 (radius: 10) [02:26:15 -10539.272449] SLOW spr round 6 (radius: 15) [02:27:26 -10538.314216] SLOW spr round 7 (radius: 5) [02:28:25 -10538.314153] SLOW spr round 8 (radius: 10) [02:29:21 -10538.314117] SLOW spr round 9 (radius: 15) [02:30:28 -10538.314091] SLOW spr round 10 (radius: 20) [02:32:10 -10538.301062] SLOW spr round 11 (radius: 25) [02:34:20 -10538.301033] Model parameter optimization (eps = 0.100000) [02:34:29] [worker #0] ML tree search #9, logLikelihood: -10537.794163 [02:34:29 -81185.896481] Initial branch length optimization [02:34:31 -60908.728584] Model parameter optimization (eps = 10.000000) [02:35:01 -60376.241199] AUTODETECT spr round 1 (radius: 5) [02:35:49 -31782.665791] AUTODETECT spr round 2 (radius: 10) [02:36:40 -20390.917947] AUTODETECT spr round 3 (radius: 15) [02:37:41 -15574.160257] AUTODETECT spr round 4 (radius: 20) [02:38:44 -12905.586450] AUTODETECT spr round 5 (radius: 25) [02:39:47 -12610.869521] SPR radius for FAST iterations: 25 (autodetect) [02:39:47 -12610.869521] Model parameter optimization (eps = 3.000000) [02:40:04 -12472.072295] FAST spr round 1 (radius: 25) [02:40:55 -10997.396889] FAST spr round 2 (radius: 25) [02:41:43 -10750.058343] FAST spr round 3 (radius: 25) [02:42:27 -10671.884749] FAST spr round 4 (radius: 25) [02:43:10 -10616.542382] FAST spr round 5 (radius: 25) [02:43:51 -10613.566342] FAST spr round 6 (radius: 25) [02:44:31 -10613.566074] Model parameter optimization (eps = 1.000000) [02:44:37 -10613.386677] SLOW spr round 1 (radius: 5) [02:45:24 -10610.181174] SLOW spr round 2 (radius: 5) [02:46:11 -10610.180141] SLOW spr round 3 (radius: 10) [02:47:02 -10609.061188] SLOW spr round 4 (radius: 5) [02:48:00 -10603.536822] SLOW spr round 5 (radius: 5) [02:48:52 -10603.264132] SLOW spr round 6 (radius: 5) [02:49:24] [worker #1] ML tree search #10, logLikelihood: -10562.055230 [02:49:39 -10603.263731] SLOW spr round 7 (radius: 10) [02:50:29 -10603.263720] SLOW spr round 8 (radius: 15) [02:51:38 -10601.319511] SLOW spr round 9 (radius: 5) [02:52:37 -10601.319348] SLOW spr round 10 (radius: 10) [02:53:34 -10601.319341] SLOW spr round 11 (radius: 15) [02:54:40 -10601.319338] SLOW spr round 12 (radius: 20) [02:56:06 -10578.915489] SLOW spr round 13 (radius: 5) [02:57:10 -10574.050828] SLOW spr round 14 (radius: 5) [02:58:03 -10574.021485] SLOW spr round 15 (radius: 10) [02:58:54 -10574.011120] SLOW spr round 16 (radius: 15) [03:00:03 -10573.707382] SLOW spr round 17 (radius: 5) [03:01:03 -10573.707379] SLOW spr round 18 (radius: 10) [03:02:00 -10573.707379] SLOW spr round 19 (radius: 15) [03:03:08 -10573.707379] SLOW spr round 20 (radius: 20) [03:04:42 -10571.239638] SLOW spr round 21 (radius: 5) [03:05:43 -10571.239414] SLOW spr round 22 (radius: 10) [03:06:43 -10571.239376] SLOW spr round 23 (radius: 15) [03:07:51 -10571.239357] SLOW spr round 24 (radius: 20) [03:09:25 -10571.239345] SLOW spr round 25 (radius: 25) [03:11:23 -10571.239337] Model parameter optimization (eps = 0.100000) [03:11:28] [worker #0] ML tree search #11, logLikelihood: -10571.150477 [03:11:28 -82122.786992] Initial branch length optimization [03:11:29 -62314.660993] Model parameter optimization (eps = 10.000000) [03:11:50 -61658.258088] AUTODETECT spr round 1 (radius: 5) [03:12:40 -31766.726927] AUTODETECT spr round 2 (radius: 10) [03:13:33 -21045.715540] AUTODETECT spr round 3 (radius: 15) [03:14:32 -16935.810149] AUTODETECT spr round 4 (radius: 20) [03:15:51 -14696.901577] AUTODETECT spr round 5 (radius: 25) [03:17:26 -13701.769660] SPR radius for FAST iterations: 25 (autodetect) [03:17:26 -13701.769660] Model parameter optimization (eps = 3.000000) [03:17:40 -13592.633602] FAST spr round 1 (radius: 25) [03:18:33 -10786.485211] FAST spr round 2 (radius: 25) [03:19:23 -10575.100776] FAST spr round 3 (radius: 25) [03:20:06 -10564.331595] FAST spr round 4 (radius: 25) [03:20:45 -10564.325502] Model parameter optimization (eps = 1.000000) [03:20:56 -10561.483367] SLOW spr round 1 (radius: 5) [03:21:42 -10558.737235] SLOW spr round 2 (radius: 5) [03:22:27 -10558.735152] SLOW spr round 3 (radius: 10) [03:23:18 -10558.734982] SLOW spr round 4 (radius: 15) [03:24:03] [worker #1] ML tree search #12, logLikelihood: -10529.398271 [03:24:30 -10558.241953] SLOW spr round 5 (radius: 5) [03:25:32 -10556.617259] SLOW spr round 6 (radius: 5) [03:26:27 -10555.855429] SLOW spr round 7 (radius: 5) [03:27:16 -10555.855249] SLOW spr round 8 (radius: 10) [03:28:07 -10555.213330] SLOW spr round 9 (radius: 5) [03:29:04 -10555.213294] SLOW spr round 10 (radius: 10) [03:29:57 -10555.213294] SLOW spr round 11 (radius: 15) [03:31:04 -10555.213073] SLOW spr round 12 (radius: 20) [03:32:39 -10554.913222] SLOW spr round 13 (radius: 5) [03:33:41 -10554.913215] SLOW spr round 14 (radius: 10) [03:34:40 -10554.913215] SLOW spr round 15 (radius: 15) [03:35:47 -10554.913211] SLOW spr round 16 (radius: 20) [03:37:19 -10554.913211] SLOW spr round 17 (radius: 25) [03:39:10 -10553.492287] SLOW spr round 18 (radius: 5) [03:40:13 -10553.491963] SLOW spr round 19 (radius: 10) [03:41:11 -10553.491955] SLOW spr round 20 (radius: 15) [03:42:17 -10553.491955] SLOW spr round 21 (radius: 20) [03:43:49 -10553.491955] SLOW spr round 22 (radius: 25) [03:45:38 -10553.491955] Model parameter optimization (eps = 0.100000) [03:45:43] [worker #0] ML tree search #13, logLikelihood: -10553.431743 [03:45:43 -85018.752821] Initial branch length optimization [03:45:45 -63482.794107] Model parameter optimization (eps = 10.000000) [03:46:11 -63040.745881] AUTODETECT spr round 1 (radius: 5) [03:47:02 -32783.985708] AUTODETECT spr round 2 (radius: 10) [03:47:55 -20730.832634] AUTODETECT spr round 3 (radius: 15) [03:48:51 -15782.101016] AUTODETECT spr round 4 (radius: 20) [03:49:57 -13959.532046] AUTODETECT spr round 5 (radius: 25) [03:51:09 -12430.115799] SPR radius for FAST iterations: 25 (autodetect) [03:51:09 -12430.115799] Model parameter optimization (eps = 3.000000) [03:51:26 -12332.619776] FAST spr round 1 (radius: 25) [03:52:20 -10725.756062] FAST spr round 2 (radius: 25) [03:53:05 -10599.708934] FAST spr round 3 (radius: 25) [03:53:48 -10594.058524] FAST spr round 4 (radius: 25) [03:54:27 -10593.374827] FAST spr round 5 (radius: 25) [03:55:06 -10593.373296] Model parameter optimization (eps = 1.000000) [03:55:18 -10589.650457] SLOW spr round 1 (radius: 5) [03:56:04 -10586.099338] SLOW spr round 2 (radius: 5) [03:56:50 -10585.764818] SLOW spr round 3 (radius: 5) [03:57:36 -10584.680609] SLOW spr round 4 (radius: 5) [03:58:23 -10584.217728] SLOW spr round 5 (radius: 5) [03:59:08 -10584.037167] SLOW spr round 6 (radius: 5) [03:59:52 -10584.036820] SLOW spr round 7 (radius: 10) [04:00:40 -10584.036789] SLOW spr round 8 (radius: 15) [04:01:49 -10581.768276] SLOW spr round 9 (radius: 5) [04:02:47 -10581.768035] SLOW spr round 10 (radius: 10) [04:03:43 -10581.768025] SLOW spr round 11 (radius: 15) [04:04:49 -10580.655913] SLOW spr round 12 (radius: 5) [04:05:47 -10580.655913] SLOW spr round 13 (radius: 10) [04:06:43 -10580.655913] SLOW spr round 14 (radius: 15) [04:07:49 -10580.655912] SLOW spr round 15 (radius: 20) [04:09:17 -10580.655912] SLOW spr round 16 (radius: 25) [04:10:15] [worker #1] ML tree search #14, logLikelihood: -10557.054094 [04:11:03 -10544.651109] SLOW spr round 17 (radius: 5) [04:12:05 -10542.053408] SLOW spr round 18 (radius: 5) [04:12:58 -10542.053407] SLOW spr round 19 (radius: 10) [04:13:49 -10542.053406] SLOW spr round 20 (radius: 15) [04:14:56 -10542.053406] SLOW spr round 21 (radius: 20) [04:16:24 -10542.053406] SLOW spr round 22 (radius: 25) [04:18:06 -10542.053406] Model parameter optimization (eps = 0.100000) [04:18:13] [worker #0] ML tree search #15, logLikelihood: -10541.958212 [04:18:13 -82169.544731] Initial branch length optimization [04:18:14 -61261.532970] Model parameter optimization (eps = 10.000000) [04:18:42 -60681.416842] AUTODETECT spr round 1 (radius: 5) [04:19:32 -31680.604312] AUTODETECT spr round 2 (radius: 10) [04:20:25 -19954.436651] AUTODETECT spr round 3 (radius: 15) [04:21:26 -15593.416186] AUTODETECT spr round 4 (radius: 20) [04:22:34 -13283.394511] AUTODETECT spr round 5 (radius: 25) [04:23:42 -12763.738373] SPR radius for FAST iterations: 25 (autodetect) [04:23:42 -12763.738373] Model parameter optimization (eps = 3.000000) [04:23:59 -12638.633626] FAST spr round 1 (radius: 25) [04:24:50 -10781.311652] FAST spr round 2 (radius: 25) [04:25:34 -10559.929429] FAST spr round 3 (radius: 25) [04:26:15 -10547.516424] FAST spr round 4 (radius: 25) [04:26:54 -10546.621190] FAST spr round 5 (radius: 25) [04:27:33 -10542.839337] FAST spr round 6 (radius: 25) [04:28:10 -10542.839113] Model parameter optimization (eps = 1.000000) [04:28:20 -10540.791474] SLOW spr round 1 (radius: 5) [04:29:06 -10538.759932] SLOW spr round 2 (radius: 5) [04:29:52 -10537.071861] SLOW spr round 3 (radius: 5) [04:30:38 -10537.068451] SLOW spr round 4 (radius: 10) [04:31:28 -10537.067591] SLOW spr round 5 (radius: 15) [04:32:32 -10535.803799] SLOW spr round 6 (radius: 5) [04:33:33 -10533.442489] SLOW spr round 7 (radius: 5) [04:34:26 -10533.442253] SLOW spr round 8 (radius: 10) [04:35:17 -10533.442062] SLOW spr round 9 (radius: 15) [04:36:21 -10533.441971] SLOW spr round 10 (radius: 20) [04:37:51 -10533.441898] SLOW spr round 11 (radius: 25) [04:39:37 -10530.419220] SLOW spr round 12 (radius: 5) [04:40:39 -10530.419111] SLOW spr round 13 (radius: 10) [04:41:36 -10530.303076] SLOW spr round 14 (radius: 5) [04:42:30 -10530.303036] SLOW spr round 15 (radius: 10) [04:43:20 -10530.303036] SLOW spr round 16 (radius: 15) [04:44:24 -10530.303036] SLOW spr round 17 (radius: 20) [04:45:50 -10530.303036] SLOW spr round 18 (radius: 25) [04:47:36 -10530.303036] Model parameter optimization (eps = 0.100000) [04:47:40] [worker #0] ML tree search #17, logLikelihood: -10530.276729 [04:47:40 -83657.856217] Initial branch length optimization [04:47:42 -62646.376729] Model parameter optimization (eps = 10.000000) [04:48:08 -62127.759993] AUTODETECT spr round 1 (radius: 5) [04:48:58 -33156.564209] AUTODETECT spr round 2 (radius: 10) [04:49:50 -21413.018614] AUTODETECT spr round 3 (radius: 15) [04:50:32] [worker #1] ML tree search #16, logLikelihood: -10528.848923 [04:50:47 -16829.019095] AUTODETECT spr round 4 (radius: 20) [04:51:52 -14902.996263] AUTODETECT spr round 5 (radius: 25) [04:53:04 -13646.030340] SPR radius for FAST iterations: 25 (autodetect) [04:53:04 -13646.030340] Model parameter optimization (eps = 3.000000) [04:53:24 -13608.241093] FAST spr round 1 (radius: 25) [04:54:18 -10850.628622] FAST spr round 2 (radius: 25) [04:55:03 -10640.679480] FAST spr round 3 (radius: 25) [04:55:44 -10597.426407] FAST spr round 4 (radius: 25) [04:56:25 -10597.425306] Model parameter optimization (eps = 1.000000) [04:56:40 -10590.334289] SLOW spr round 1 (radius: 5) [04:57:27 -10589.569584] SLOW spr round 2 (radius: 5) [04:58:16 -10587.711586] SLOW spr round 3 (radius: 5) [04:58:59 -10587.710985] SLOW spr round 4 (radius: 10) [04:59:48 -10587.037655] SLOW spr round 5 (radius: 5) [05:00:46 -10586.338900] SLOW spr round 6 (radius: 5) [05:01:34 -10586.321861] SLOW spr round 7 (radius: 10) [05:02:23 -10586.163661] SLOW spr round 8 (radius: 5) [05:03:18 -10586.087652] SLOW spr round 9 (radius: 10) [05:04:10 -10586.085742] SLOW spr round 10 (radius: 15) [05:05:15 -10586.085421] SLOW spr round 11 (radius: 20) [05:06:44 -10583.056959] SLOW spr round 12 (radius: 5) [05:07:47 -10579.165092] SLOW spr round 13 (radius: 5) [05:08:41 -10578.487887] SLOW spr round 14 (radius: 5) [05:09:28 -10577.563269] SLOW spr round 15 (radius: 5) [05:10:11 -10577.563219] SLOW spr round 16 (radius: 10) [05:10:58 -10577.563186] SLOW spr round 17 (radius: 15) [05:12:05 -10577.563170] SLOW spr round 18 (radius: 20) [05:13:36 -10577.553342] SLOW spr round 19 (radius: 25) [05:15:35 -10577.553227] Model parameter optimization (eps = 0.100000) [05:15:42] [worker #0] ML tree search #19, logLikelihood: -10577.445714 [05:41:24] [worker #1] ML tree search #18, logLikelihood: -10525.201114 [06:19:00] [worker #1] ML tree search #20, logLikelihood: -10534.079059 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.384515,0.407529) (0.230901,0.453658) (0.296041,1.231388) (0.088544,4.223987) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -10523.522972 AIC score: 23629.045944 / AICc score: 3359573.045944 / BIC score: 27030.481068 Free parameters (model + branch lengths): 1291 WARNING: Number of free parameters (K=1291) is larger than alignment size (n=103). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 377 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O14497/3_mltree/O14497.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O14497/3_mltree/O14497.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O14497/3_mltree/O14497.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O14497/3_mltree/O14497.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O14497/3_mltree/O14497.raxml.log Analysis started: 07-Jul-2021 16:56:12 / finished: 07-Jul-2021 23:15:12 Elapsed time: 22740.712 seconds Consumed energy: 1393.627 Wh (= 7 km in an electric car, or 35 km with an e-scooter!)