RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 17:57:57 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/2_msa/O00217_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/3_mltree/O00217.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/4_raxmlng_ancestral/O00217 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626101877 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/2_msa/O00217_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 210 sites WARNING: Sequences tr_A0CQ33_A0CQ33_PARTE_5888 and tr_A0DTL7_A0DTL7_PARTE_5888 are exactly identical! WARNING: Sequences tr_B6HB96_B6HB96_PENRW_500485 and tr_A0A0A2KDM7_A0A0A2KDM7_PENEN_27334 are exactly identical! WARNING: Sequences tr_B6HB96_B6HB96_PENRW_500485 and tr_A0A135LDQ7_A0A135LDQ7_PENPA_5078 are exactly identical! WARNING: Sequences tr_A0A0E1RWY7_A0A0E1RWY7_COCIM_246410 and tr_A0A0J7BDP2_A0A0J7BDP2_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6Q7L6_B6Q7L6_TALMQ_441960 and tr_A0A093VES7_A0A093VES7_TALMA_1077442 are exactly identical! WARNING: Sequences tr_B2VSC6_B2VSC6_PYRTR_426418 and tr_A0A2W1E510_A0A2W1E510_9PLEO_45151 are exactly identical! WARNING: Sequences tr_C0NGG2_C0NGG2_AJECG_447093 and tr_F0U5Y2_F0U5Y2_AJEC8_544711 are exactly identical! WARNING: Sequences tr_C0NGG2_C0NGG2_AJECG_447093 and tr_A6R7A1_A6R7A1_AJECN_339724 are exactly identical! WARNING: Sequences tr_Q296Q6_Q296Q6_DROPS_46245 and tr_B4GEU4_B4GEU4_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A179UE37_A0A179UE37_BLAGS_559298 and tr_C5GER7_C5GER7_AJEDR_559297 are exactly identical! WARNING: Sequences tr_G7JVL9_G7JVL9_MEDTR_3880 and tr_G7KTU1_G7KTU1_MEDTR_3880 are exactly identical! WARNING: Sequences sp_Q0MQI3_NDUS8_PANTR_9598 and sp_O00217_NDUS8_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q0MQI3_NDUS8_PANTR_9598 and tr_A0A2R9BSV7_A0A2R9BSV7_PANPA_9597 are exactly identical! WARNING: Sequences tr_F9FTR1_F9FTR1_FUSOF_660025 and tr_W7M5U5_W7M5U5_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9FTR1_F9FTR1_FUSOF_660025 and tr_X0DB58_X0DB58_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FTR1_F9FTR1_FUSOF_660025 and tr_A0A2H3HP72_A0A2H3HP72_FUSOX_327505 are exactly identical! WARNING: Sequences tr_E9ECW7_E9ECW7_METAQ_655827 and tr_A0A0D9P523_A0A0D9P523_METAN_1291518 are exactly identical! WARNING: Sequences tr_J4WMV6_J4WMV6_BEAB2_655819 and tr_A0A0A2VST6_A0A0A2VST6_BEABA_1245745 are exactly identical! WARNING: Sequences tr_K4B3H5_K4B3H5_SOLLC_4081 and tr_Q38M79_Q38M79_SOLTU_4113 are exactly identical! WARNING: Sequences sp_Q2MI46_NDHI_SOLLC_4081 and sp_Q2VEC7_NDHI_SOLTU_4113 are exactly identical! WARNING: Sequences sp_P56755_NDHI_ARATH_3702 and tr_D7MVL8_D7MVL8_ARALL_81972 are exactly identical! WARNING: Sequences sp_Q42599_NDS8A_ARATH_3702 and tr_D7KVX4_D7KVX4_ARALL_81972 are exactly identical! WARNING: Sequences sp_Q9FX83_NDS8B_ARATH_3702 and tr_D7KEI0_D7KEI0_ARALL_81972 are exactly identical! WARNING: Sequences tr_Q2UN89_Q2UN89_ASPOR_510516 and tr_A0A0F0I7I1_A0A0F0I7I1_ASPPU_1403190 are exactly identical! WARNING: Sequences tr_Q2UN89_Q2UN89_ASPOR_510516 and tr_A0A0L1ING0_A0A0L1ING0_ASPNO_1509407 are exactly identical! WARNING: Sequences tr_Q2UN89_Q2UN89_ASPOR_510516 and tr_A0A1F7ZTX6_A0A1F7ZTX6_9EURO_109264 are exactly identical! WARNING: Sequences tr_Q2UN89_Q2UN89_ASPOR_510516 and tr_A0A1S9D6M4_A0A1S9D6M4_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_Q2UN89_Q2UN89_ASPOR_510516 and tr_A0A2G7FIX0_A0A2G7FIX0_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A0E0GUE8_A0A0E0GUE8_ORYNI_4536 and tr_A0A0E0P1X2_A0A0E0P1X2_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GUE8_A0A0E0GUE8_ORYNI_4536 and tr_A0A0D3FPN0_A0A0D3FPN0_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GUE8_A0A0E0GUE8_ORYNI_4536 and tr_A0A0D9ZDS9_A0A0D9ZDS9_9ORYZ_40148 are exactly identical! WARNING: Sequences sp_Q6ENA3_NDHI_ORYNI_4536 and sp_P0C385_NDHI_ORYSI_39946 are exactly identical! WARNING: Sequences sp_Q6ENA3_NDHI_ORYNI_4536 and tr_I1QKY4_I1QKY4_ORYGL_4538 are exactly identical! WARNING: Sequences sp_Q6ENA3_NDHI_ORYNI_4536 and tr_E9KJ01_E9KJ01_9ORYZ_40149 are exactly identical! WARNING: Sequences sp_Q6ENA3_NDHI_ORYNI_4536 and tr_H6CSX7_H6CSX7_ORYRU_4529 are exactly identical! WARNING: Sequences sp_Q6ENA3_NDHI_ORYNI_4536 and sp_P0C386_NDHI_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0K0JKQ9_A0A0K0JKQ9_BRUMA_6279 and tr_A0A0N4TJ49_A0A0N4TJ49_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A1D3W4_A1D3W4_NEOFI_331117 and tr_A0A0S7E0G0_A0A0S7E0G0_9EURO_293939 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_G7XSV5_G7XSV5_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_G3YEE6_G3YEE6_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A100ING9_A0A100ING9_ASPNG_5061 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A146F7A8_A0A146F7A8_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A1L9NMG4_A0A1L9NMG4_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A1L9UGH1_A0A1L9UGH1_9EURO_767769 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A317URP6_A0A317URP6_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A319AK37_A0A319AK37_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F7EFK7_F7EFK7_MACMU_9544 and tr_G7PP61_G7PP61_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7EFK7_F7EFK7_MACMU_9544 and tr_A0A2K6BDD4_A0A2K6BDD4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F4NTL9_F4NTL9_BATDJ_684364 and tr_A0A177WCD7_A0A177WCD7_BATDE_403673 are exactly identical! WARNING: Sequences sp_P46722_NDHI_MAIZE_4577 and tr_A0A2T7DYP2_A0A2T7DYP2_9POAL_1504633 are exactly identical! WARNING: Sequences tr_I1PFZ0_I1PFZ0_ORYGL_4538 and tr_Q7XZW1_Q7XZW1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F9XDX7_F9XDX7_ZYMTI_336722 and tr_A0A0F4GMZ7_A0A0F4GMZ7_9PEZI_1047168 are exactly identical! WARNING: Sequences tr_E3NCV7_E3NCV7_CAERE_31234 and tr_A0A261BNZ7_A0A261BNZ7_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A8WK35_A8WK35_CAEBR_6238 and tr_A0A2G5UM86_A0A2G5UM86_9PELO_1611254 are exactly identical! WARNING: Sequences tr_F2SDS9_F2SDS9_TRIRC_559305 and tr_A0A059J3I3_A0A059J3I3_9EURO_1215338 are exactly identical! WARNING: Sequences tr_F2SDS9_F2SDS9_TRIRC_559305 and tr_A0A178ET01_A0A178ET01_TRIRU_5551 are exactly identical! WARNING: Sequences tr_D4AYH6_D4AYH6_ARTBC_663331 and tr_F2PJ87_F2PJ87_TRIEC_559882 are exactly identical! WARNING: Sequences tr_A0A0D2XJH5_A0A0D2XJH5_FUSO4_426428 and tr_N4UAQ9_N4UAQ9_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_A0A0D2XJH5_A0A0D2XJH5_FUSO4_426428 and tr_A0A2H3SYX7_A0A2H3SYX7_FUSOX_5507 are exactly identical! WARNING: Sequences tr_L8G2C3_L8G2C3_PSED2_658429 and tr_A0A1B8GBS6_A0A1B8GBS6_9PEZI_342668 are exactly identical! WARNING: Sequences tr_L8G2C3_L8G2C3_PSED2_658429 and tr_A0A1B8F7G1_A0A1B8F7G1_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_S4YYQ6_S4YYQ6_HORVV_112509 and tr_S4Z354_S4Z354_TRIUA_4572 are exactly identical! WARNING: Sequences tr_S4YYQ6_S4YYQ6_HORVV_112509 and sp_P05312_NDHI_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M4CHE4_M4CHE4_BRARP_51351 and tr_A0A078J324_A0A078J324_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4F1Y6_M4F1Y6_BRARP_51351 and tr_A0A0D3D1Q4_A0A0D3D1Q4_BRAOL_109376 are exactly identical! WARNING: Sequences tr_R1DI64_R1DI64_EMIHU_2903 and tr_R1FNN8_R1FNN8_EMIHU_2903 are exactly identical! WARNING: Sequences tr_S0EC27_S0EC27_GIBF5_1279085 and tr_A0A365MZN6_A0A365MZN6_GIBIN_948311 are exactly identical! WARNING: Sequences tr_M2SWB8_M2SWB8_COCSN_665912 and tr_M2VBT8_M2VBT8_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2SWB8_M2SWB8_COCSN_665912 and tr_W6ZMH2_W6ZMH2_COCMI_930090 are exactly identical! WARNING: Sequences tr_W2Q0Q5_W2Q0Q5_PHYPN_761204 and tr_A0A0W8CNM2_A0A0W8CNM2_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2Q0Q5_W2Q0Q5_PHYPN_761204 and tr_W2GI46_W2GI46_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A067E1W2_A0A067E1W2_CITSI_2711 and tr_V4UB41_V4UB41_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A078HRZ1_A0A078HRZ1_BRANA_3708 and tr_A0A0D3CAU7_A0A0D3CAU7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A094FG08_A0A094FG08_9PEZI_1420910 and tr_A0A1B8E7T0_A0A1B8E7T0_9PEZI_1524831 are exactly identical! WARNING: Sequences tr_A0A067C927_A0A067C927_SAPPC_695850 and tr_T0PZ92_T0PZ92_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A0D2SMX9_A0A0D2SMX9_GOSRA_29730 and tr_A0A1U8JMN8_A0A1U8JMN8_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2SMX9_A0A0D2SMX9_GOSRA_29730 and tr_A0A1U8LIJ0_A0A1U8LIJ0_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2W2J7_A0A0D2W2J7_GOSRA_29730 and tr_A0A1U8NVN3_A0A1U8NVN3_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F9XNP4_A0A0F9XNP4_TRIHA_5544 and tr_A0A2T3ZUG9_A0A2T3ZUG9_TRIHA_983964 are exactly identical! WARNING: Sequences tr_A0A0F8TX65_A0A0F8TX65_9EURO_308745 and tr_A0A2T5LLG6_A0A2T5LLG6_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0K8LMU3_A0A0K8LMU3_9EURO_91492 and tr_A0A397GWL2_A0A397GWL2_9EURO_41047 are exactly identical! WARNING: Sequences tr_A0A0K8LMU3_A0A0K8LMU3_9EURO_91492 and tr_A0A2I1CAG3_A0A2I1CAG3_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A0A0F7THA5_A0A0F7THA5_9EURO_104259 and tr_A0A1Q5T166_A0A1Q5T166_9EURO_1316194 are exactly identical! WARNING: Sequences tr_A0A0L9VFH0_A0A0L9VFH0_PHAAN_3914 and tr_A0A1S3VGS8_A0A1S3VGS8_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0G4NTR1_A0A0G4NTR1_PENCA_1429867 and tr_A0A101MCZ8_A0A101MCZ8_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0G4NTR1_A0A0G4NTR1_PENCA_1429867 and tr_A0A1V6NR99_A0A1V6NR99_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A0G4NTR1_A0A0G4NTR1_PENCA_1429867 and tr_A0A1V6RHE7_A0A1V6RHE7_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A0C9N1Q9_A0A0C9N1Q9_9FUNG_91626 and tr_A0A162TTD4_A0A162TTD4_MUCCL_747725 are exactly identical! WARNING: Sequences tr_A0A166S7X0_A0A166S7X0_9PEZI_708197 and tr_A0A167EL21_A0A167EL21_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_A0A177DBF5_A0A177DBF5_ALTAL_5599 and tr_A0A364N8F4_A0A364N8F4_9PLEO_183478 are exactly identical! WARNING: Sequences tr_A0A140G1X3_A0A140G1X3_TOBAC_4097 and tr_A0A1U8QE62_A0A1U8QE62_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AVM3_A0A1S4AVM3_TOBAC_4097 and tr_A0A1U7W5C5_A0A1U7W5C5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1L9WW99_A0A1L9WW99_ASPAC_690307 and tr_A0A2V5ILL1_A0A2V5ILL1_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WW99_A0A1L9WW99_ASPAC_690307 and tr_A0A2V5IQ40_A0A2V5IQ40_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1R3RRB7_A0A1R3RRB7_ASPC5_602072 and tr_A0A317VQ08_A0A317VQ08_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A1R3RRB7_A0A1R3RRB7_ASPC5_602072 and tr_A0A319EU16_A0A319EU16_9EURO_1448318 are exactly identical! WARNING: Sequences tr_A0A1R3RRB7_A0A1R3RRB7_ASPC5_602072 and tr_A0A395GWI6_A0A395GWI6_9EURO_1448316 are exactly identical! WARNING: Sequences tr_A0A1V8U1M3_A0A1V8U1M3_9PEZI_1974281 and tr_A0A1V8SRN1_A0A1V8SRN1_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1Y3BZ29_A0A1Y3BZ29_HELAN_4232 and tr_A0A251RZ22_A0A251RZ22_HELAN_4232 are exactly identical! WARNING: Sequences tr_A0A1Y3BZ29_A0A1Y3BZ29_HELAN_4232 and tr_A0A251S5E3_A0A251S5E3_HELAN_4232 are exactly identical! WARNING: Sequences tr_A0A2A4ISM1_A0A2A4ISM1_HELVI_7102 and tr_A0A2A4J7G0_A0A2A4J7G0_HELVI_7102 are exactly identical! WARNING: Sequences tr_A0A2A2JJM5_A0A2A2JJM5_9BILA_2018661 and tr_A0A2A2LL37_A0A2A2LL37_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2G2YYI7_A0A2G2YYI7_CAPAN_4072 and tr_A0A1L6Z6B1_A0A1L6Z6B1_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G2YYI7_A0A2G2YYI7_CAPAN_4072 and tr_A0A2G3DBY0_A0A2G3DBY0_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2I2F7F0_A0A2I2F7F0_9EURO_41067 and tr_A0A2J5HV83_A0A2J5HV83_9EURO_482145 are exactly identical! WARNING: Sequences tr_A0A2Y9PMF9_A0A2Y9PMF9_DELLE_9749 and tr_A0A383Z7G9_A0A383Z7G9_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 106 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/4_raxmlng_ancestral/O00217.raxml.reduced.phy Alignment comprises 1 partitions and 210 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 210 Gaps: 12.55 % Invariant sites: 0.48 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/4_raxmlng_ancestral/O00217.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/3_mltree/O00217.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 53 / 4240 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -64025.626323 [00:00:00 -64025.626323] Initial branch length optimization [00:00:01 -56952.639052] Model parameter optimization (eps = 0.100000) [00:00:36] Tree #1, final logLikelihood: -56815.240405 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.279061,0.158511) (0.354357,0.430884) (0.221054,1.143338) (0.145528,3.781676) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/4_raxmlng_ancestral/O00217.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/4_raxmlng_ancestral/O00217.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/4_raxmlng_ancestral/O00217.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/4_raxmlng_ancestral/O00217.raxml.log Analysis started: 12-Jul-2021 17:57:57 / finished: 12-Jul-2021 17:58:35 Elapsed time: 38.307 seconds Consumed energy: 3.049 Wh