RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 06-Jul-2021 02:57:42 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/2_msa/O00217_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/3_mltree/O00217 --seed 2 --threads 3 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/2_msa/O00217_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 164 sites WARNING: Sequences tr_B4QXU2_B4QXU2_DROSI_7240 and tr_B4HLH6_B4HLH6_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QXU2_B4QXU2_DROSI_7240 and tr_A0A1W4VPN6_A0A1W4VPN6_DROFC_30025 are exactly identical! WARNING: Sequences tr_A0A1D5PE41_A0A1D5PE41_CHICK_9031 and tr_G1MY85_G1MY85_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PE41_A0A1D5PE41_CHICK_9031 and tr_A0A226MQ76_A0A226MQ76_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A0D1D1F0_A0A0D1D1F0_USTMA_237631 and tr_M9LVK0_M9LVK0_PSEA3_1151754 are exactly identical! WARNING: Sequences tr_A0A0D1D1F0_A0A0D1D1F0_USTMA_237631 and tr_R9PDG2_R9PDG2_PSEHS_1305764 are exactly identical! WARNING: Sequences tr_A0CQ33_A0CQ33_PARTE_5888 and tr_A0DTL7_A0DTL7_PARTE_5888 are exactly identical! WARNING: Sequences tr_A0CQ33_A0CQ33_PARTE_5888 and tr_A0E1H1_A0E1H1_PARTE_5888 are exactly identical! WARNING: Sequences tr_B6HB96_B6HB96_PENRW_500485 and tr_A0A0A2KDM7_A0A0A2KDM7_PENEN_27334 are exactly identical! WARNING: Sequences tr_B6HB96_B6HB96_PENRW_500485 and tr_A0A135LDQ7_A0A135LDQ7_PENPA_5078 are exactly identical! WARNING: Sequences tr_B6HB96_B6HB96_PENRW_500485 and tr_A0A1V6XGR2_A0A1V6XGR2_PENNA_60175 are exactly identical! WARNING: Sequences tr_H2MIQ5_H2MIQ5_ORYLA_8090 and tr_I3KGI6_I3KGI6_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2MIQ5_H2MIQ5_ORYLA_8090 and tr_A0A2U9BQQ8_A0A2U9BQQ8_SCOMX_52904 are exactly identical! WARNING: Sequences tr_E3S5L9_E3S5L9_PYRTT_861557 and tr_B2VSC6_B2VSC6_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3S5L9_E3S5L9_PYRTT_861557 and tr_A0A2W1E510_A0A2W1E510_9PLEO_45151 are exactly identical! WARNING: Sequences tr_B4JFD3_B4JFD3_DROGR_7222 and tr_B3M382_B3M382_DROAN_7217 are exactly identical! WARNING: Sequences tr_G1R414_G1R414_NOMLE_61853 and sp_Q0MQI3_NDUS8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R414_G1R414_NOMLE_61853 and sp_O00217_NDUS8_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R414_G1R414_NOMLE_61853 and tr_A0A2R9BSV7_A0A2R9BSV7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0E1RWY7_A0A0E1RWY7_COCIM_246410 and tr_E9CZK2_E9CZK2_COCPS_443226 are exactly identical! WARNING: Sequences tr_A0A0E1RWY7_A0A0E1RWY7_COCIM_246410 and tr_A0A0J7BDP2_A0A0J7BDP2_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6Q7L6_B6Q7L6_TALMQ_441960 and tr_A0A093VES7_A0A093VES7_TALMA_1077442 are exactly identical! WARNING: Sequences tr_B6Q7L6_B6Q7L6_TALMQ_441960 and tr_A0A364KKY3_A0A364KKY3_9EURO_1196081 are exactly identical! WARNING: Sequences tr_A7F3Q4_A7F3Q4_SCLS1_665079 and tr_W9CLR9_W9CLR9_9HELO_1432307 are exactly identical! WARNING: Sequences tr_G3JNG2_G3JNG2_CORMM_983644 and tr_A0A167G069_A0A167G069_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_C0NGG2_C0NGG2_AJECG_447093 and tr_F0U5Y2_F0U5Y2_AJEC8_544711 are exactly identical! WARNING: Sequences tr_C0NGG2_C0NGG2_AJECG_447093 and tr_A6R7A1_A6R7A1_AJECN_339724 are exactly identical! WARNING: Sequences sp_Q12644_NDUS8_NEUCR_367110 and tr_G4UZY4_G4UZY4_NEUT9_510952 are exactly identical! WARNING: Sequences tr_Q296Q6_Q296Q6_DROPS_46245 and tr_B4GEU4_B4GEU4_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8NNF3_B8NNF3_ASPFN_332952 and tr_Q2UN89_Q2UN89_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NNF3_B8NNF3_ASPFN_332952 and tr_A0A0F0I7I1_A0A0F0I7I1_ASPPU_1403190 are exactly identical! WARNING: Sequences tr_B8NNF3_B8NNF3_ASPFN_332952 and tr_A0A0L1ING0_A0A0L1ING0_ASPNO_1509407 are exactly identical! WARNING: Sequences tr_B8NNF3_B8NNF3_ASPFN_332952 and tr_A0A1F7ZTX6_A0A1F7ZTX6_9EURO_109264 are exactly identical! WARNING: Sequences tr_B8NNF3_B8NNF3_ASPFN_332952 and tr_A0A1S9D6M4_A0A1S9D6M4_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_B8NNF3_B8NNF3_ASPFN_332952 and tr_A0A2G7FIX0_A0A2G7FIX0_9EURO_656916 are exactly identical! WARNING: Sequences tr_C5FV70_C5FV70_ARTOC_554155 and tr_E5R109_E5R109_ARTGP_535722 are exactly identical! WARNING: Sequences tr_C5FV70_C5FV70_ARTOC_554155 and tr_F2SDS9_F2SDS9_TRIRC_559305 are exactly identical! WARNING: Sequences tr_C5FV70_C5FV70_ARTOC_554155 and tr_A0A059J3I3_A0A059J3I3_9EURO_1215338 are exactly identical! WARNING: Sequences tr_C5FV70_C5FV70_ARTOC_554155 and tr_A0A178ET01_A0A178ET01_TRIRU_5551 are exactly identical! WARNING: Sequences tr_C5MB03_C5MB03_CANTT_294747 and tr_A0A367Y4P7_A0A367Y4P7_9ASCO_5486 are exactly identical! WARNING: Sequences tr_C5MB03_C5MB03_CANTT_294747 and tr_A0A367YBV8_A0A367YBV8_9ASCO_5486 are exactly identical! WARNING: Sequences tr_A0A179UE37_A0A179UE37_BLAGS_559298 and tr_C5GER7_C5GER7_AJEDR_559297 are exactly identical! WARNING: Sequences tr_A0A179UE37_A0A179UE37_BLAGS_559298 and tr_A0A1J9Q0B4_A0A1J9Q0B4_9EURO_1658174 are exactly identical! WARNING: Sequences tr_A2Q590_A2Q590_MEDTR_3880 and tr_G7JVL9_G7JVL9_MEDTR_3880 are exactly identical! WARNING: Sequences tr_A2Q590_A2Q590_MEDTR_3880 and tr_G7KTU1_G7KTU1_MEDTR_3880 are exactly identical! WARNING: Sequences tr_F6RLC8_F6RLC8_HORSE_9796 and sp_P42028_NDUS8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F6RLC8_F6RLC8_HORSE_9796 and tr_L5KR57_L5KR57_PTEAL_9402 are exactly identical! WARNING: Sequences tr_F6RLC8_F6RLC8_HORSE_9796 and tr_M3VZI9_M3VZI9_FELCA_9685 are exactly identical! WARNING: Sequences tr_F9FTR1_F9FTR1_FUSOF_660025 and tr_W7M5U5_W7M5U5_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9FTR1_F9FTR1_FUSOF_660025 and tr_S0EC27_S0EC27_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_F9FTR1_F9FTR1_FUSOF_660025 and tr_X0DB58_X0DB58_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FTR1_F9FTR1_FUSOF_660025 and tr_A0A2H3HP72_A0A2H3HP72_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9FTR1_F9FTR1_FUSOF_660025 and tr_A0A365MZN6_A0A365MZN6_GIBIN_948311 are exactly identical! WARNING: Sequences tr_E9F325_E9F325_METRA_655844 and tr_E9ECW7_E9ECW7_METAQ_655827 are exactly identical! WARNING: Sequences tr_E9F325_E9F325_METRA_655844 and tr_A0A0D9P523_A0A0D9P523_METAN_1291518 are exactly identical! WARNING: Sequences tr_J4WMV6_J4WMV6_BEAB2_655819 and tr_A0A0A2VST6_A0A0A2VST6_BEABA_1245745 are exactly identical! WARNING: Sequences tr_K4B3H5_K4B3H5_SOLLC_4081 and tr_K4D0T7_K4D0T7_SOLLC_4081 are exactly identical! WARNING: Sequences tr_K4B3H5_K4B3H5_SOLLC_4081 and sp_P80269_NDUS8_SOLTU_4113 are exactly identical! WARNING: Sequences tr_K4B3H5_K4B3H5_SOLLC_4081 and tr_Q38M79_Q38M79_SOLTU_4113 are exactly identical! WARNING: Sequences sp_Q2MI46_NDHI_SOLLC_4081 and sp_Q2VEC7_NDHI_SOLTU_4113 are exactly identical! WARNING: Sequences tr_A0A158NSR2_A0A158NSR2_ATTCE_12957 and tr_A0A151HZ84_A0A151HZ84_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A2H2ICY7_A0A2H2ICY7_CAEJA_281687 and tr_G0MG91_G0MG91_CAEBE_135651 are exactly identical! WARNING: Sequences tr_A0A2H2ICY7_A0A2H2ICY7_CAEJA_281687 and tr_A8WK35_A8WK35_CAEBR_6238 are exactly identical! WARNING: Sequences tr_A0A2H2ICY7_A0A2H2ICY7_CAEJA_281687 and tr_A0A2G5UM86_A0A2G5UM86_9PELO_1611254 are exactly identical! WARNING: Sequences tr_G9PAZ1_G9PAZ1_HYPAI_452589 and tr_G9MWT3_G9MWT3_HYPVG_413071 are exactly identical! WARNING: Sequences tr_G9PAZ1_G9PAZ1_HYPAI_452589 and tr_G0RK47_G0RK47_HYPJQ_431241 are exactly identical! WARNING: Sequences tr_G9PAZ1_G9PAZ1_HYPAI_452589 and tr_A0A0F9XNP4_A0A0F9XNP4_TRIHA_5544 are exactly identical! WARNING: Sequences tr_G9PAZ1_G9PAZ1_HYPAI_452589 and tr_A0A2T4BX77_A0A2T4BX77_TRILO_983965 are exactly identical! WARNING: Sequences tr_G9PAZ1_G9PAZ1_HYPAI_452589 and tr_A0A2T4B981_A0A2T4B981_9HYPO_58853 are exactly identical! WARNING: Sequences tr_G9PAZ1_G9PAZ1_HYPAI_452589 and tr_A0A2T3ZUG9_A0A2T3ZUG9_TRIHA_983964 are exactly identical! WARNING: Sequences tr_H0UW56_H0UW56_CAVPO_10141 and tr_A0A1S3FIX5_A0A1S3FIX5_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P56755_NDHI_ARATH_3702 and tr_D7MVL8_D7MVL8_ARALL_81972 are exactly identical! WARNING: Sequences sp_Q42599_NDS8A_ARATH_3702 and tr_D7KVX4_D7KVX4_ARALL_81972 are exactly identical! WARNING: Sequences sp_Q9FX83_NDS8B_ARATH_3702 and tr_D7KEI0_D7KEI0_ARALL_81972 are exactly identical! WARNING: Sequences tr_A0A0E0GUE8_A0A0E0GUE8_ORYNI_4536 and tr_A0A0E0D7J4_A0A0E0D7J4_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0GUE8_A0A0E0GUE8_ORYNI_4536 and tr_A0A0E0P1X2_A0A0E0P1X2_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GUE8_A0A0E0GUE8_ORYNI_4536 and tr_A0A0D3FPN0_A0A0D3FPN0_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GUE8_A0A0E0GUE8_ORYNI_4536 and tr_A0A0D9ZDS9_A0A0D9ZDS9_9ORYZ_40148 are exactly identical! WARNING: Sequences sp_Q6ENA3_NDHI_ORYNI_4536 and sp_P0C385_NDHI_ORYSI_39946 are exactly identical! WARNING: Sequences sp_Q6ENA3_NDHI_ORYNI_4536 and tr_I1QKY4_I1QKY4_ORYGL_4538 are exactly identical! WARNING: Sequences sp_Q6ENA3_NDHI_ORYNI_4536 and tr_E9KJ01_E9KJ01_9ORYZ_40149 are exactly identical! WARNING: Sequences sp_Q6ENA3_NDHI_ORYNI_4536 and tr_H6CSX7_H6CSX7_ORYRU_4529 are exactly identical! WARNING: Sequences sp_Q6ENA3_NDHI_ORYNI_4536 and sp_P0C386_NDHI_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0K0JKQ9_A0A0K0JKQ9_BRUMA_6279 and tr_A0A0N4TJ49_A0A0N4TJ49_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A1D3W4_A1D3W4_NEOFI_331117 and tr_A0A0K8LMU3_A0A0K8LMU3_9EURO_91492 are exactly identical! WARNING: Sequences tr_A1D3W4_A1D3W4_NEOFI_331117 and tr_A0A0S7E0G0_A0A0S7E0G0_9EURO_293939 are exactly identical! WARNING: Sequences tr_A1D3W4_A1D3W4_NEOFI_331117 and tr_A0A229X8L5_A0A229X8L5_9EURO_1245748 are exactly identical! WARNING: Sequences tr_A1D3W4_A1D3W4_NEOFI_331117 and tr_A0A397GWL2_A0A397GWL2_9EURO_41047 are exactly identical! WARNING: Sequences tr_A1D3W4_A1D3W4_NEOFI_331117 and tr_A0A2I1CAG3_A0A2I1CAG3_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_G7XSV5_G7XSV5_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_G3YEE6_G3YEE6_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A100ING9_A0A100ING9_ASPNG_5061 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A146F7A8_A0A146F7A8_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A1L9NMG4_A0A1L9NMG4_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A1L9UGH1_A0A1L9UGH1_9EURO_767769 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A317URP6_A0A317URP6_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A2RB65_A2RB65_ASPNC_425011 and tr_A0A319AK37_A0A319AK37_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F7EFK7_F7EFK7_MACMU_9544 and tr_G7PP61_G7PP61_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7EFK7_F7EFK7_MACMU_9544 and tr_A0A0D9R8Z3_A0A0D9R8Z3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7EFK7_F7EFK7_MACMU_9544 and tr_A0A2K5NR88_A0A2K5NR88_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7EFK7_F7EFK7_MACMU_9544 and tr_A0A2K6BDD4_A0A2K6BDD4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7EFK7_F7EFK7_MACMU_9544 and tr_A0A2K5YHU6_A0A2K5YHU6_MANLE_9568 are exactly identical! WARNING: Sequences tr_B8AKK1_B8AKK1_ORYSI_39946 and tr_I1PFZ0_I1PFZ0_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8AKK1_B8AKK1_ORYSI_39946 and tr_Q7XZW1_Q7XZW1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_Q7PY23_Q7PY23_ANOGA_7165 and tr_A0A084VI17_A0A084VI17_ANOSI_74873 are exactly identical! WARNING: Sequences tr_F4NTL9_F4NTL9_BATDJ_684364 and tr_A0A177WCD7_A0A177WCD7_BATDE_403673 are exactly identical! WARNING: Sequences sp_P46722_NDHI_MAIZE_4577 and tr_A0A2T7DYP2_A0A2T7DYP2_9POAL_1504633 are exactly identical! WARNING: Sequences tr_F9XDX7_F9XDX7_ZYMTI_336722 and tr_A0A0F4GMZ7_A0A0F4GMZ7_9PEZI_1047168 are exactly identical! WARNING: Sequences tr_E3NCV7_E3NCV7_CAERE_31234 and tr_A0A261BNZ7_A0A261BNZ7_9PELO_1503980 are exactly identical! WARNING: Sequences tr_B9RBF2_B9RBF2_RICCO_3988 and tr_A0A0A0K5Z9_A0A0A0K5Z9_CUCSA_3659 are exactly identical! WARNING: Sequences tr_B9RBF2_B9RBF2_RICCO_3988 and tr_A0A1S3BFX1_A0A1S3BFX1_CUCME_3656 are exactly identical! WARNING: Sequences tr_I1M277_I1M277_SOYBN_3847 and tr_I1MEF5_I1MEF5_SOYBN_3847 are exactly identical! WARNING: Sequences tr_I1M277_I1M277_SOYBN_3847 and tr_A0A0L9VFH0_A0A0L9VFH0_PHAAN_3914 are exactly identical! WARNING: Sequences tr_I1M277_I1M277_SOYBN_3847 and tr_A0A1S3VGS8_A0A1S3VGS8_VIGRR_3916 are exactly identical! WARNING: Sequences tr_D4AYH6_D4AYH6_ARTBC_663331 and tr_F2PJ87_F2PJ87_TRIEC_559882 are exactly identical! WARNING: Sequences tr_E6ZL43_E6ZL43_SPORE_999809 and tr_V5EWB1_V5EWB1_KALBG_1365824 are exactly identical! WARNING: Sequences tr_E6ZL43_E6ZL43_SPORE_999809 and tr_A0A0F7SBH9_A0A0F7SBH9_9BASI_49012 are exactly identical! WARNING: Sequences tr_A0A0D2XJH5_A0A0D2XJH5_FUSO4_426428 and tr_N4UAQ9_N4UAQ9_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_A0A0D2XJH5_A0A0D2XJH5_FUSO4_426428 and tr_A0A2H3SYX7_A0A2H3SYX7_FUSOX_5507 are exactly identical! WARNING: Sequences tr_I1BW04_I1BW04_RHIO9_246409 and tr_I1CCV6_I1CCV6_RHIO9_246409 are exactly identical! WARNING: Sequences tr_L8G2C3_L8G2C3_PSED2_658429 and tr_A0A094EQM1_A0A094EQM1_9PEZI_1420912 are exactly identical! WARNING: Sequences tr_L8G2C3_L8G2C3_PSED2_658429 and tr_A0A1B8GBS6_A0A1B8GBS6_9PEZI_342668 are exactly identical! WARNING: Sequences tr_L8G2C3_L8G2C3_PSED2_658429 and tr_A0A1B8CMM4_A0A1B8CMM4_9PEZI_1622147 are exactly identical! WARNING: Sequences tr_L8G2C3_L8G2C3_PSED2_658429 and tr_A0A1B8F7G1_A0A1B8F7G1_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_S4YYQ6_S4YYQ6_HORVV_112509 and tr_S4Z354_S4Z354_TRIUA_4572 are exactly identical! WARNING: Sequences tr_S4YYQ6_S4YYQ6_HORVV_112509 and sp_P05312_NDHI_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M4CHE4_M4CHE4_BRARP_51351 and tr_M4F1Y6_M4F1Y6_BRARP_51351 are exactly identical! WARNING: Sequences tr_M4CHE4_M4CHE4_BRARP_51351 and tr_A0A078J324_A0A078J324_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4CHE4_M4CHE4_BRARP_51351 and tr_A0A0D3CVW9_A0A0D3CVW9_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4CHE4_M4CHE4_BRARP_51351 and tr_A0A0D3D1Q4_A0A0D3D1Q4_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4EB72_M4EB72_BRARP_51351 and tr_A0A078HBH9_A0A078HBH9_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4EB72_M4EB72_BRARP_51351 and tr_A0A078HRZ1_A0A078HRZ1_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4EB72_M4EB72_BRARP_51351 and tr_A0A0D3CAU7_A0A0D3CAU7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_R1DI64_R1DI64_EMIHU_2903 and tr_R1FNN8_R1FNN8_EMIHU_2903 are exactly identical! WARNING: Sequences tr_U3JEL5_U3JEL5_FICAL_59894 and tr_A0A091EQB3_A0A091EQB3_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3JEL5_U3JEL5_FICAL_59894 and tr_A0A218UUL6_A0A218UUL6_9PASE_299123 are exactly identical! WARNING: Sequences tr_M3AV24_M3AV24_PSEFD_383855 and tr_A0A139HNV3_A0A139HNV3_9PEZI_321146 are exactly identical! WARNING: Sequences tr_M2SWB8_M2SWB8_COCSN_665912 and tr_M2VBT8_M2VBT8_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2SWB8_M2SWB8_COCSN_665912 and tr_W6Y4T3_W6Y4T3_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2SWB8_M2SWB8_COCSN_665912 and tr_W6ZMH2_W6ZMH2_COCMI_930090 are exactly identical! WARNING: Sequences tr_R0K5P9_R0K5P9_SETT2_671987 and tr_A0A178E9G0_A0A178E9G0_9PLEO_765867 are exactly identical! WARNING: Sequences tr_W2Q0Q5_W2Q0Q5_PHYPN_761204 and tr_A0A0W8CNM2_A0A0W8CNM2_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2Q0Q5_W2Q0Q5_PHYPN_761204 and tr_W2GI46_W2GI46_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A3B6KQS3_A0A3B6KQS3_WHEAT_4565 and tr_W5F9R3_W5F9R3_WHEAT_4565 are exactly identical! WARNING: Sequences tr_S7ZAT7_S7ZAT7_PENO1_933388 and tr_A0A1F5LX83_A0A1F5LX83_9EURO_1835702 are exactly identical! WARNING: Sequences tr_S7ZAT7_S7ZAT7_PENO1_933388 and tr_A0A2I2G1V6_A0A2I2G1V6_9EURO_1392250 are exactly identical! WARNING: Sequences tr_W9WRC5_W9WRC5_9EURO_1182543 and tr_A0A0D2CY09_A0A0D2CY09_9EURO_569365 are exactly identical! WARNING: Sequences tr_A0A044UUQ9_A0A044UUQ9_ONCVO_6282 and tr_A0A182E8M4_A0A182E8M4_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067E1W2_A0A067E1W2_CITSI_2711 and tr_V4UB41_V4UB41_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067E1W2_A0A067E1W2_CITSI_2711 and tr_A0A2H5PY97_A0A2H5PY97_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A074XBR4_A0A074XBR4_9PEZI_1043004 and tr_A0A074WGH7_A0A074WGH7_9PEZI_1043003 are exactly identical! WARNING: Sequences tr_A0A094FG08_A0A094FG08_9PEZI_1420910 and tr_A0A1B8E7T0_A0A1B8E7T0_9PEZI_1524831 are exactly identical! WARNING: Sequences tr_A0A067C927_A0A067C927_SAPPC_695850 and tr_T0PZ92_T0PZ92_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A0D2SMX9_A0A0D2SMX9_GOSRA_29730 and tr_A0A1U8JMN8_A0A1U8JMN8_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2SMX9_A0A0D2SMX9_GOSRA_29730 and tr_A0A1U8LIJ0_A0A1U8LIJ0_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2W2J7_A0A0D2W2J7_GOSRA_29730 and tr_A0A1U8NVN3_A0A1U8NVN3_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F8TX65_A0A0F8TX65_9EURO_308745 and tr_A0A2T5LLG6_A0A2T5LLG6_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0N0DE86_A0A0N0DE86_FUSLA_179993 and tr_A0A1C3YLB4_A0A1C3YLB4_GIBZE_229533 are exactly identical! WARNING: Sequences tr_A0A0N0DE86_A0A0N0DE86_FUSLA_179993 and tr_A0A1B8AF42_A0A1B8AF42_FUSPO_36050 are exactly identical! WARNING: Sequences tr_A0A0N0DE86_A0A0N0DE86_FUSLA_179993 and tr_A0A2L2TI41_A0A2L2TI41_9HYPO_56646 are exactly identical! WARNING: Sequences tr_A0A0F7THA5_A0A0F7THA5_9EURO_104259 and tr_A0A1Q5T166_A0A1Q5T166_9EURO_1316194 are exactly identical! WARNING: Sequences tr_A0A0G4NTR1_A0A0G4NTR1_PENCA_1429867 and tr_A0A101MCZ8_A0A101MCZ8_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0G4NTR1_A0A0G4NTR1_PENCA_1429867 and tr_A0A1V6NR99_A0A1V6NR99_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A0G4NTR1_A0A0G4NTR1_PENCA_1429867 and tr_A0A1V6RHE7_A0A1V6RHE7_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A0C9N1Q9_A0A0C9N1Q9_9FUNG_91626 and tr_A0A162TTD4_A0A162TTD4_MUCCL_747725 are exactly identical! WARNING: Sequences tr_A0A0P1BLF2_A0A0P1BLF2_9BASI_401625 and tr_A0A316W240_A0A316W240_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A194WRM7_A0A194WRM7_9HELO_149040 and tr_A0A1L7WXF2_A0A1L7WXF2_9HELO_576137 are exactly identical! WARNING: Sequences tr_A0A194WRM7_A0A194WRM7_9HELO_149040 and tr_A0A2J6TW21_A0A2J6TW21_9HELO_1095630 are exactly identical! WARNING: Sequences tr_A0A194WRM7_A0A194WRM7_9HELO_149040 and tr_A0A2J6RVH9_A0A2J6RVH9_9HELO_1149755 are exactly identical! WARNING: Sequences tr_A0A166S7X0_A0A166S7X0_9PEZI_708197 and tr_A0A167EL21_A0A167EL21_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_A0A177DBF5_A0A177DBF5_ALTAL_5599 and tr_A0A364N8F4_A0A364N8F4_9PLEO_183478 are exactly identical! WARNING: Sequences tr_A0A168MMG2_A0A168MMG2_ABSGL_4829 and tr_A0A168SZD7_A0A168SZD7_ABSGL_4829 are exactly identical! WARNING: Sequences tr_A0A1A5ZX16_A0A1A5ZX16_9TREE_1296121 and tr_A0A1B9J292_A0A1B9J292_9TREE_1331196 are exactly identical! WARNING: Sequences tr_A0A140G1X3_A0A140G1X3_TOBAC_4097 and tr_A0A1U8QE62_A0A1U8QE62_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3X374_A0A1S3X374_TOBAC_4097 and tr_A0A1S3YK56_A0A1S3YK56_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S3X374_A0A1S3X374_TOBAC_4097 and tr_A0A1S4AVM3_A0A1S4AVM3_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S3X374_A0A1S3X374_TOBAC_4097 and tr_A0A1J6IEZ3_A0A1J6IEZ3_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3X374_A0A1S3X374_TOBAC_4097 and tr_A0A1U7VRJ4_A0A1U7VRJ4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3X374_A0A1S3X374_TOBAC_4097 and tr_A0A1U7W5C5_A0A1U7W5C5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3RFW2_A0A1S3RFW2_SALSA_8030 and tr_B5XEV5_B5XEV5_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3RFW2_A0A1S3RFW2_SALSA_8030 and tr_A0A060VSC9_A0A060VSC9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3RFW2_A0A1S3RFW2_SALSA_8030 and tr_A0A060W0X8_A0A060W0X8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3STE2_A0A1S3STE2_SALSA_8030 and tr_A0A060WAV8_A0A060WAV8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2C9U7I0_A0A2C9U7I0_MANES_3983 and tr_A0A2C9UHN6_A0A2C9UHN6_MANES_3983 are exactly identical! WARNING: Sequences tr_A0A1B7NGP3_A0A1B7NGP3_9HOMO_1314800 and tr_A0A1J8QED0_A0A1J8QED0_9HOMO_180088 are exactly identical! WARNING: Sequences tr_A0A1L9WW99_A0A1L9WW99_ASPAC_690307 and tr_A0A319CCP0_A0A319CCP0_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WW99_A0A1L9WW99_ASPAC_690307 and tr_A0A2V5ILL1_A0A2V5ILL1_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WW99_A0A1L9WW99_ASPAC_690307 and tr_A0A2V5IQ40_A0A2V5IQ40_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1R3RRB7_A0A1R3RRB7_ASPC5_602072 and tr_A0A317VQ08_A0A317VQ08_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A1R3RRB7_A0A1R3RRB7_ASPC5_602072 and tr_A0A319EU16_A0A319EU16_9EURO_1448318 are exactly identical! WARNING: Sequences tr_A0A1R3RRB7_A0A1R3RRB7_ASPC5_602072 and tr_A0A395GWI6_A0A395GWI6_9EURO_1448316 are exactly identical! WARNING: Sequences tr_A0A1V8T508_A0A1V8T508_9PEZI_1974281 and tr_A0A1V8U1M3_A0A1V8U1M3_9PEZI_1974281 are exactly identical! WARNING: Sequences tr_A0A1V8T508_A0A1V8T508_9PEZI_1974281 and tr_A0A1V8SRN1_A0A1V8SRN1_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1V8T508_A0A1V8T508_9PEZI_1974281 and tr_A0A1V8TJL2_A0A1V8TJL2_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1X2I853_A0A1X2I853_9FUNG_90262 and tr_A0A1X2IXK7_A0A1X2IXK7_9FUNG_90262 are exactly identical! WARNING: Sequences tr_A0A1Z5TSH9_A0A1Z5TSH9_HORWE_1157616 and tr_A0A1Z5TTA1_A0A1Z5TTA1_HORWE_1157616 are exactly identical! WARNING: Sequences tr_A0A172W406_A0A172W406_HELAN_4232 and tr_A0A1Y3BZ29_A0A1Y3BZ29_HELAN_4232 are exactly identical! WARNING: Sequences tr_A0A172W406_A0A172W406_HELAN_4232 and tr_A0A251RZ22_A0A251RZ22_HELAN_4232 are exactly identical! WARNING: Sequences tr_A0A172W406_A0A172W406_HELAN_4232 and tr_A0A251S5E3_A0A251S5E3_HELAN_4232 are exactly identical! WARNING: Sequences tr_A0A172W406_A0A172W406_HELAN_4232 and tr_A0A2U1PTF2_A0A2U1PTF2_ARTAN_35608 are exactly identical! WARNING: Sequences tr_A0A251UT05_A0A251UT05_HELAN_4232 and tr_A0A2U1KKR5_A0A2U1KKR5_ARTAN_35608 are exactly identical! WARNING: Sequences tr_A0A2A4ISM1_A0A2A4ISM1_HELVI_7102 and tr_A0A2A4J7G0_A0A2A4J7G0_HELVI_7102 are exactly identical! WARNING: Sequences tr_A0A2A2JJM5_A0A2A2JJM5_9BILA_2018661 and tr_A0A2A2LL37_A0A2A2LL37_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2H3EPC1_A0A2H3EPC1_9HELO_946125 and tr_A0A2H3EV93_A0A2H3EV93_9HELO_946125 are exactly identical! WARNING: Sequences tr_A0A2G2YJG3_A0A2G2YJG3_CAPAN_4072 and tr_A0A2G2YYI7_A0A2G2YYI7_CAPAN_4072 are exactly identical! WARNING: Sequences tr_A0A2G2YJG3_A0A2G2YJG3_CAPAN_4072 and tr_A0A1L6Z6B1_A0A1L6Z6B1_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G2YJG3_A0A2G2YJG3_CAPAN_4072 and tr_A0A2G3DBY0_A0A2G3DBY0_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G5HUE3_A0A2G5HUE3_CERBT_122368 and tr_A0A2S6CMJ3_A0A2S6CMJ3_9PEZI_357750 are exactly identical! WARNING: Sequences tr_A0A2I2F7F0_A0A2I2F7F0_9EURO_41067 and tr_A0A2J5HV83_A0A2J5HV83_9EURO_482145 are exactly identical! WARNING: Sequences tr_A0A2K3QAL1_A0A2K3QAL1_9HYPO_45235 and tr_A0A2S4KND6_A0A2S4KND6_9HYPO_94208 are exactly identical! WARNING: Sequences tr_A0A2P5EH51_A0A2P5EH51_TREOI_63057 and tr_A0A2P5CA55_A0A2P5CA55_PARAD_3476 are exactly identical! WARNING: Sequences tr_A0A2G4SRR8_A0A2G4SRR8_9FUNG_1340429 and tr_A0A367JVU1_A0A367JVU1_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2U3VGI2_A0A2U3VGI2_ODORO_9708 and tr_A0A2U3YIX3_A0A2U3YIX3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3VGI2_A0A2U3VGI2_ODORO_9708 and tr_A0A2Y9JST0_A0A2Y9JST0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2Y9PMF9_A0A2Y9PMF9_DELLE_9749 and tr_A0A2Y9FQ34_A0A2Y9FQ34_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9PMF9_A0A2Y9PMF9_DELLE_9749 and tr_A0A383Z7G9_A0A383Z7G9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A369GZS0_A0A369GZS0_9HYPO_2039875 and tr_A0A367LEJ5_A0A367LEJ5_9HYPO_1330021 are exactly identical! WARNING: Duplicate sequences found: 217 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/3_mltree/O00217.raxml.reduced.phy Alignment comprises 1 partitions and 164 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 164 / 164 Gaps: 3.80 % Invariant sites: 0.61 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/3_mltree/O00217.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 164 / 13120 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -146294.886782] Initial branch length optimization [00:00:04 -118124.225012] Model parameter optimization (eps = 10.000000) [00:01:16 -117547.477096] AUTODETECT spr round 1 (radius: 5) [00:03:39 -75853.802869] AUTODETECT spr round 2 (radius: 10) [00:06:03 -55600.701756] AUTODETECT spr round 3 (radius: 15) [00:08:38 -44697.023060] AUTODETECT spr round 4 (radius: 20) [00:11:30 -41395.263816] AUTODETECT spr round 5 (radius: 25) [00:14:47 -39651.365500] SPR radius for FAST iterations: 25 (autodetect) [00:14:47 -39651.365500] Model parameter optimization (eps = 3.000000) [00:15:18 -39458.384423] FAST spr round 1 (radius: 25) [00:17:56 -33189.241935] FAST spr round 2 (radius: 25) [00:20:03 -31459.713105] FAST spr round 3 (radius: 25) [00:22:02 -30444.199447] FAST spr round 4 (radius: 25) [00:23:48 -30250.307677] FAST spr round 5 (radius: 25) [00:25:27 -30213.072300] FAST spr round 6 (radius: 25) [00:27:04 -30212.206989] FAST spr round 7 (radius: 25) [00:28:37 -30212.206396] Model parameter optimization (eps = 1.000000) [00:28:59 -30201.744690] SLOW spr round 1 (radius: 5) [00:31:04 -30190.371367] SLOW spr round 2 (radius: 5) [00:33:08 -30189.962035] SLOW spr round 3 (radius: 5) [00:35:07 -30189.961454] SLOW spr round 4 (radius: 10) [00:37:01 -30188.650039] SLOW spr round 5 (radius: 5) [00:39:27 -30187.922508] SLOW spr round 6 (radius: 5) [00:41:37 -30187.922469] SLOW spr round 7 (radius: 10) [00:43:33 -30187.922465] SLOW spr round 8 (radius: 15) [00:46:24 -30187.922462] SLOW spr round 9 (radius: 20) [00:49:54 -30187.922461] SLOW spr round 10 (radius: 25) [00:54:17 -30187.922460] Model parameter optimization (eps = 0.100000) [00:54:29] [worker #0] ML tree search #1, logLikelihood: -30187.383863 [00:54:29 -147862.082382] Initial branch length optimization [00:54:33 -118998.147613] Model parameter optimization (eps = 10.000000) [00:55:30 -118400.722194] AUTODETECT spr round 1 (radius: 5) [00:57:50 -77476.198408] AUTODETECT spr round 2 (radius: 10) [01:00:11 -55165.916160] AUTODETECT spr round 3 (radius: 15) [01:02:43 -44772.837667] AUTODETECT spr round 4 (radius: 20) [01:05:27 -38963.837040] AUTODETECT spr round 5 (radius: 25) [01:08:23 -37261.993722] SPR radius for FAST iterations: 25 (autodetect) [01:08:23 -37261.993722] Model parameter optimization (eps = 3.000000) [01:08:50 -37138.128779] FAST spr round 1 (radius: 25) [01:11:15 -31294.967477] FAST spr round 2 (radius: 25) [01:13:15 -30189.433174] FAST spr round 3 (radius: 25) [01:15:01 -29815.199046] FAST spr round 4 (radius: 25) [01:16:39 -29625.915853] FAST spr round 5 (radius: 25) [01:18:11 -29624.489871] FAST spr round 6 (radius: 25) [01:19:39 -29624.471470] Model parameter optimization (eps = 1.000000) [01:20:02 -29577.251198] SLOW spr round 1 (radius: 5) [01:22:02 -29556.349965] SLOW spr round 2 (radius: 5) [01:24:02 -29551.376450] SLOW spr round 3 (radius: 5) [01:25:55 -29551.376397] SLOW spr round 4 (radius: 10) [01:27:50 -29540.487424] SLOW spr round 5 (radius: 5) [01:30:19 -29533.137037] SLOW spr round 6 (radius: 5) [01:32:26 -29533.136171] SLOW spr round 7 (radius: 10) [01:34:21 -29533.136099] SLOW spr round 8 (radius: 15) [01:37:09 -29527.457302] SLOW spr round 9 (radius: 5) [01:39:35 -29526.817355] SLOW spr round 10 (radius: 5) [01:41:43 -29526.817158] SLOW spr round 11 (radius: 10) [01:43:39 -29526.817134] SLOW spr round 12 (radius: 15) [01:46:24 -29526.817130] SLOW spr round 13 (radius: 20) [01:49:51 -29525.631723] SLOW spr round 14 (radius: 5) [01:52:21 -29525.390566] SLOW spr round 15 (radius: 5) [01:54:17] [worker #1] ML tree search #2, logLikelihood: -29955.659522 [01:54:34 -29525.389472] SLOW spr round 16 (radius: 10) [01:56:33 -29525.389099] SLOW spr round 17 (radius: 15) [01:59:30 -29525.388973] SLOW spr round 18 (radius: 20) [02:02:42] [worker #2] ML tree search #3, logLikelihood: -29507.837139 [02:03:09 -29525.388959] SLOW spr round 19 (radius: 25) [02:07:40 -29493.035413] SLOW spr round 20 (radius: 5) [02:10:18 -29453.413485] SLOW spr round 21 (radius: 5) [02:12:36 -29453.413269] SLOW spr round 22 (radius: 10) [02:14:38 -29453.413246] SLOW spr round 23 (radius: 15) [02:17:23 -29453.137539] SLOW spr round 24 (radius: 5) [02:19:53 -29434.214094] SLOW spr round 25 (radius: 5) [02:22:03 -29434.213857] SLOW spr round 26 (radius: 10) [02:24:03 -29434.213848] SLOW spr round 27 (radius: 15) [02:26:51 -29434.213846] SLOW spr round 28 (radius: 20) [02:30:16 -29434.213845] SLOW spr round 29 (radius: 25) [02:34:38 -29434.213845] Model parameter optimization (eps = 0.100000) [02:34:55] [worker #0] ML tree search #4, logLikelihood: -29433.811020 [02:34:55 -147232.641741] Initial branch length optimization [02:35:00 -118541.251737] Model parameter optimization (eps = 10.000000) [02:36:02 -117971.246105] AUTODETECT spr round 1 (radius: 5) [02:38:32 -78121.805668] AUTODETECT spr round 2 (radius: 10) [02:41:06 -58214.678249] AUTODETECT spr round 3 (radius: 15) [02:43:58 -48118.956018] AUTODETECT spr round 4 (radius: 20) [02:46:57 -43529.171949] AUTODETECT spr round 5 (radius: 25) [02:50:13 -41358.474428] SPR radius for FAST iterations: 25 (autodetect) [02:50:13 -41358.474428] Model parameter optimization (eps = 3.000000) [02:50:41 -41161.179473] FAST spr round 1 (radius: 25) [02:53:07 -34380.759715] FAST spr round 2 (radius: 25) [02:55:08 -31093.816173] FAST spr round 3 (radius: 25) [02:56:57 -30412.875330] FAST spr round 4 (radius: 25) [02:58:43 -30314.647851] FAST spr round 5 (radius: 25) [03:00:23 -30304.694929] FAST spr round 6 (radius: 25) [03:01:59 -30304.114888] FAST spr round 7 (radius: 25) [03:03:31 -30304.113351] Model parameter optimization (eps = 1.000000) [03:03:49 -30299.665829] SLOW spr round 1 (radius: 5) [03:05:53 -30288.892349] SLOW spr round 2 (radius: 5) [03:07:51 -30287.937238] SLOW spr round 3 (radius: 5) [03:09:48 -30287.936635] SLOW spr round 4 (radius: 10) [03:11:48 -30283.904001] SLOW spr round 5 (radius: 5) [03:14:19 -30282.282724] SLOW spr round 6 (radius: 5) [03:16:30 -30281.986289] SLOW spr round 7 (radius: 5) [03:18:32 -30281.984785] SLOW spr round 8 (radius: 10) [03:20:11] [worker #2] ML tree search #6, logLikelihood: -29509.270569 [03:20:26 -30281.984694] SLOW spr round 9 (radius: 15) [03:23:42 -30280.677243] SLOW spr round 10 (radius: 5) [03:26:17 -30280.677058] SLOW spr round 11 (radius: 10) [03:28:39 -30280.677056] SLOW spr round 12 (radius: 15) [03:31:39 -30280.677055] SLOW spr round 13 (radius: 20) [03:36:11 -30279.994776] SLOW spr round 14 (radius: 5) [03:38:46 -30269.986580] SLOW spr round 15 (radius: 5) [03:40:25] [worker #1] ML tree search #5, logLikelihood: -30397.113444 [03:41:06 -30269.986500] SLOW spr round 16 (radius: 10) [03:43:04 -30269.986500] SLOW spr round 17 (radius: 15) [03:46:01 -30269.986500] SLOW spr round 18 (radius: 20) [03:50:05 -30269.986500] SLOW spr round 19 (radius: 25) [03:55:18 -30269.986500] Model parameter optimization (eps = 0.100000) [03:55:30] [worker #0] ML tree search #7, logLikelihood: -30269.542717 [03:55:30 -147223.887383] Initial branch length optimization [03:55:34 -118400.616153] Model parameter optimization (eps = 10.000000) [03:56:34 -117821.859411] AUTODETECT spr round 1 (radius: 5) [03:58:53 -76940.193988] AUTODETECT spr round 2 (radius: 10) [04:01:13 -57102.402317] AUTODETECT spr round 3 (radius: 15) [04:03:43 -44138.152909] AUTODETECT spr round 4 (radius: 20) [04:06:32 -39032.842754] AUTODETECT spr round 5 (radius: 25) [04:09:34 -38022.864448] SPR radius for FAST iterations: 25 (autodetect) [04:09:34 -38022.864448] Model parameter optimization (eps = 3.000000) [04:10:10 -37856.443955] FAST spr round 1 (radius: 25) [04:12:30 -31532.651781] FAST spr round 2 (radius: 25) [04:14:18 -30779.773396] FAST spr round 3 (radius: 25) [04:16:01 -30747.880785] FAST spr round 4 (radius: 25) [04:17:37 -30747.541305] FAST spr round 5 (radius: 25) [04:19:09 -30747.518219] Model parameter optimization (eps = 1.000000) [04:19:28 -30730.678769] SLOW spr round 1 (radius: 5) [04:21:29 -30726.955755] SLOW spr round 2 (radius: 5) [04:23:27 -30726.044558] SLOW spr round 3 (radius: 5) [04:25:20 -30726.043504] SLOW spr round 4 (radius: 10) [04:27:13 -30724.259074] SLOW spr round 5 (radius: 5) [04:29:36 -30723.230188] SLOW spr round 6 (radius: 5) [04:31:43 -30723.230068] SLOW spr round 7 (radius: 10) [04:33:40 -30722.355685] SLOW spr round 8 (radius: 5) [04:36:00 -30722.355665] SLOW spr round 9 (radius: 10) [04:38:06 -30722.328949] SLOW spr round 10 (radius: 15) [04:40:58 -30717.711063] SLOW spr round 11 (radius: 5) [04:43:29 -30716.829402] SLOW spr round 12 (radius: 5) [04:45:42 -30715.718436] SLOW spr round 13 (radius: 5) [04:47:43 -30715.718099] SLOW spr round 14 (radius: 10) [04:49:38 -30711.842937] SLOW spr round 15 (radius: 5) [04:52:01 -30711.839594] SLOW spr round 16 (radius: 10) [04:53:48] [worker #2] ML tree search #9, logLikelihood: -30095.482134 [04:54:07 -30711.839571] SLOW spr round 17 (radius: 15) [04:56:58 -30711.839570] SLOW spr round 18 (radius: 20) [05:00:50 -30711.839569] SLOW spr round 19 (radius: 25) [05:05:32 -30702.732782] SLOW spr round 20 (radius: 5) [05:08:00 -30702.732722] SLOW spr round 21 (radius: 10) [05:10:20 -30702.714462] SLOW spr round 22 (radius: 15) [05:13:05 -30702.713888] SLOW spr round 23 (radius: 20) [05:17:02 -30702.713882] SLOW spr round 24 (radius: 25) [05:21:41 -30700.340074] SLOW spr round 25 (radius: 5) [05:24:15 -30695.652464] SLOW spr round 26 (radius: 5) [05:26:31 -30693.546814] SLOW spr round 27 (radius: 5) [05:28:33 -30693.546760] SLOW spr round 28 (radius: 10) [05:30:27 -30693.546760] SLOW spr round 29 (radius: 15) [05:33:29 -30693.546759] SLOW spr round 30 (radius: 20) [05:37:12 -30693.546759] SLOW spr round 31 (radius: 25) [05:41:53 -30693.546759] Model parameter optimization (eps = 0.100000) [05:41:59] [worker #0] ML tree search #10, logLikelihood: -30693.454426 [05:41:59 -147678.263316] Initial branch length optimization [05:42:02 -118902.507001] Model parameter optimization (eps = 10.000000) [05:43:07 -118387.010161] AUTODETECT spr round 1 (radius: 5) [05:45:28 -75650.783286] AUTODETECT spr round 2 (radius: 10) [05:47:48 -56352.361102] AUTODETECT spr round 3 (radius: 15) [05:50:15 -45133.554336] AUTODETECT spr round 4 (radius: 20) [05:53:11 -40707.946485] AUTODETECT spr round 5 (radius: 25) [05:56:22 -36374.664771] SPR radius for FAST iterations: 25 (autodetect) [05:56:22 -36374.664771] Model parameter optimization (eps = 3.000000) [05:56:47 -36229.575031] FAST spr round 1 (radius: 25) [05:59:06 -29977.758806] FAST spr round 2 (radius: 25) [06:00:53 -29704.966540] FAST spr round 3 (radius: 25) [06:02:33 -29632.619528] FAST spr round 4 (radius: 25) [06:04:09 -29628.766295] FAST spr round 5 (radius: 25) [06:05:38 -29628.764374] Model parameter optimization (eps = 1.000000) [06:05:54 -29620.036790] SLOW spr round 1 (radius: 5) [06:07:54 -29617.363148] SLOW spr round 2 (radius: 5) [06:08:06] [worker #2] ML tree search #12, logLikelihood: -30261.855348 [06:09:49 -29615.286592] SLOW spr round 3 (radius: 5) [06:11:40 -29615.286321] SLOW spr round 4 (radius: 10) [06:13:30 -29614.161654] SLOW spr round 5 (radius: 5) [06:15:53 -29612.309276] SLOW spr round 6 (radius: 5) [06:17:58 -29612.309068] SLOW spr round 7 (radius: 10) [06:19:51 -29612.309066] SLOW spr round 8 (radius: 15) [06:22:50 -29611.594028] SLOW spr round 9 (radius: 5) [06:25:16 -29604.056618] SLOW spr round 10 (radius: 5) [06:26:09] [worker #1] ML tree search #8, logLikelihood: -29504.205540 [06:27:26 -29602.188617] SLOW spr round 11 (radius: 5) [06:29:23 -29602.188574] SLOW spr round 12 (radius: 10) [06:31:13 -29601.663412] SLOW spr round 13 (radius: 5) [06:33:32 -29601.641652] SLOW spr round 14 (radius: 10) [06:35:36 -29601.640290] SLOW spr round 15 (radius: 15) [06:38:22 -29515.839460] SLOW spr round 16 (radius: 5) [06:40:48 -29505.857507] SLOW spr round 17 (radius: 5) [06:42:55 -29505.857294] SLOW spr round 18 (radius: 10) [06:44:51 -29505.857288] SLOW spr round 19 (radius: 15) [06:47:47 -29505.857287] SLOW spr round 20 (radius: 20) [06:51:46 -29505.857286] SLOW spr round 21 (radius: 25) [06:56:47 -29503.886280] SLOW spr round 22 (radius: 5) [06:59:21 -29503.886210] SLOW spr round 23 (radius: 10) [07:01:43 -29503.886208] SLOW spr round 24 (radius: 15) [07:04:27 -29503.886207] SLOW spr round 25 (radius: 20) [07:08:40 -29503.886207] SLOW spr round 26 (radius: 25) [07:13:38 -29503.886206] Model parameter optimization (eps = 0.100000) [07:14:00] [worker #0] ML tree search #13, logLikelihood: -29475.966778 [07:14:00 -146349.690974] Initial branch length optimization [07:14:05 -118819.469855] Model parameter optimization (eps = 10.000000) [07:15:01 -118404.270641] AUTODETECT spr round 1 (radius: 5) [07:17:25 -77225.539673] AUTODETECT spr round 2 (radius: 10) [07:19:48 -54360.293498] AUTODETECT spr round 3 (radius: 15) [07:22:16 -44128.795192] AUTODETECT spr round 4 (radius: 20) [07:25:07 -38908.840358] AUTODETECT spr round 5 (radius: 25) [07:28:19 -37439.821413] SPR radius for FAST iterations: 25 (autodetect) [07:28:19 -37439.821413] Model parameter optimization (eps = 3.000000) [07:28:48 -37297.641394] FAST spr round 1 (radius: 25) [07:31:11 -30910.336843] FAST spr round 2 (radius: 25) [07:33:01 -30349.200493] FAST spr round 3 (radius: 25) [07:34:44 -30234.672560] FAST spr round 4 (radius: 25) [07:36:21 -30223.641975] FAST spr round 5 (radius: 25) [07:37:52 -30222.212265] FAST spr round 6 (radius: 25) [07:39:20 -30222.212216] Model parameter optimization (eps = 1.000000) [07:39:44 -30162.082558] SLOW spr round 1 (radius: 5) [07:41:54 -30152.670011] SLOW spr round 2 (radius: 5) [07:44:01 -30148.493092] SLOW spr round 3 (radius: 5) [07:46:03 -30148.492858] SLOW spr round 4 (radius: 10) [07:48:08 -30135.799815] SLOW spr round 5 (radius: 5) [07:50:49 -30132.816097] SLOW spr round 6 (radius: 5) [07:53:08 -30132.815397] SLOW spr round 7 (radius: 10) [07:55:15 -30130.075797] SLOW spr round 8 (radius: 5) [07:57:49 -30127.153417] SLOW spr round 9 (radius: 5) [07:58:22] [worker #2] ML tree search #15, logLikelihood: -30028.128743 [08:00:05 -30127.153395] SLOW spr round 10 (radius: 10) [08:02:11 -30124.935580] SLOW spr round 11 (radius: 5) [08:04:50 -30123.228458] SLOW spr round 12 (radius: 5) [08:07:07 -30123.228307] SLOW spr round 13 (radius: 10) [08:09:11 -30123.228284] SLOW spr round 14 (radius: 15) [08:12:25 -30123.157444] SLOW spr round 15 (radius: 20) [08:16:48 -30123.157429] SLOW spr round 16 (radius: 25) [08:22:12 -30122.466989] SLOW spr round 17 (radius: 5) [08:24:55 -30122.466974] SLOW spr round 18 (radius: 10) [08:27:23 -30122.466961] SLOW spr round 19 (radius: 15) [08:29:43] [worker #1] ML tree search #11, logLikelihood: -29476.513361 [08:30:19 -30122.466948] SLOW spr round 20 (radius: 20) [08:34:52 -30122.466935] SLOW spr round 21 (radius: 25) [08:40:14 -30122.466923] Model parameter optimization (eps = 0.100000) [08:40:23] [worker #0] ML tree search #16, logLikelihood: -30122.285516 [08:40:23 -146311.710676] Initial branch length optimization [08:40:27 -117800.435966] Model parameter optimization (eps = 10.000000) [08:41:24 -117287.157258] AUTODETECT spr round 1 (radius: 5) [08:44:01 -77759.718661] AUTODETECT spr round 2 (radius: 10) [08:46:35 -55901.722134] AUTODETECT spr round 3 (radius: 15) [08:49:30 -45421.530418] AUTODETECT spr round 4 (radius: 20) [08:52:42 -40239.995665] AUTODETECT spr round 5 (radius: 25) [08:56:22 -35708.875475] SPR radius for FAST iterations: 25 (autodetect) [08:56:22 -35708.875475] Model parameter optimization (eps = 3.000000) [08:56:49 -35566.452302] FAST spr round 1 (radius: 25) [08:59:20 -29969.474912] FAST spr round 2 (radius: 25) [09:01:15 -29601.809531] FAST spr round 3 (radius: 25) [09:03:05 -29562.655634] FAST spr round 4 (radius: 25) [09:04:43 -29555.895668] FAST spr round 5 (radius: 25) [09:06:18 -29532.352253] FAST spr round 6 (radius: 25) [09:07:52 -29532.349943] Model parameter optimization (eps = 1.000000) [09:08:19 -29526.342190] SLOW spr round 1 (radius: 5) [09:10:28 -29517.582411] SLOW spr round 2 (radius: 5) [09:12:35 -29514.720888] SLOW spr round 3 (radius: 5) [09:14:42 -29511.231517] SLOW spr round 4 (radius: 5) [09:16:43 -29511.230527] SLOW spr round 5 (radius: 10) [09:18:43 -29510.903042] SLOW spr round 6 (radius: 5) [09:21:16 -29510.578431] SLOW spr round 7 (radius: 5) [09:21:35] [worker #2] ML tree search #18, logLikelihood: -29639.439373 [09:23:32 -29510.578385] SLOW spr round 8 (radius: 10) [09:25:38 -29509.215179] SLOW spr round 9 (radius: 5) [09:28:11 -29509.097434] SLOW spr round 10 (radius: 5) [09:30:26 -29509.097344] SLOW spr round 11 (radius: 10) [09:32:30 -29509.097343] SLOW spr round 12 (radius: 15) [09:35:41 -29508.324644] SLOW spr round 13 (radius: 5) [09:38:21 -29504.960629] SLOW spr round 14 (radius: 5) [09:40:40 -29504.960108] SLOW spr round 15 (radius: 10) [09:42:46 -29504.960088] SLOW spr round 16 (radius: 15) [09:45:53 -29504.960087] SLOW spr round 17 (radius: 20) [09:50:13 -29504.928165] SLOW spr round 18 (radius: 25) [09:55:48 -29503.444109] SLOW spr round 19 (radius: 5) [09:58:32 -29502.647428] SLOW spr round 20 (radius: 5) [10:00:54 -29502.647426] SLOW spr round 21 (radius: 10) [10:03:02 -29502.647426] SLOW spr round 22 (radius: 15) [10:06:10 -29502.647425] SLOW spr round 23 (radius: 20) [10:10:42 -29502.647424] SLOW spr round 24 (radius: 25) [10:13:24] [worker #1] ML tree search #14, logLikelihood: -30153.644073 [10:16:33 -29502.647423] Model parameter optimization (eps = 0.100000) [10:16:48] [worker #0] ML tree search #19, logLikelihood: -29502.429217 [12:35:36] [worker #1] ML tree search #17, logLikelihood: -29519.185254 [15:07:05] [worker #1] ML tree search #20, logLikelihood: -29496.184506 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.330258,0.316074) (0.380789,0.904056) (0.160275,2.516604) (0.128678,1.150244) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -29433.811020 AIC score: 62877.622040 / AICc score: 8106937.622040 / BIC score: 69092.854228 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=164). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 348 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/3_mltree/O00217.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/3_mltree/O00217.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/3_mltree/O00217.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/3_mltree/O00217.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O00217/3_mltree/O00217.raxml.log Analysis started: 06-Jul-2021 02:57:42 / finished: 06-Jul-2021 18:04:48 Elapsed time: 54425.355 seconds Consumed energy: 3634.577 Wh (= 18 km in an electric car, or 91 km with an e-scooter!)