RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 23-Jun-2021 00:51:52 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/O00206/2_msa/O00206_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/O00206/3_mltree/O00206.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/O00206/4_raxmlng_ancestral/O00206 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1624398712 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/O00206/2_msa/O00206_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 839 sites WARNING: Sequences tr_A0A1L1RQ93_A0A1L1RQ93_CHICK_9031 and tr_G1MSU0_G1MSU0_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_H0ZIQ5_H0ZIQ5_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_U3KIW8_U3KIW8_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_R0JMB5_R0JMB5_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A091F3W1_A0A091F3W1_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A091VTC8_A0A091VTC8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A087QYI0_A0A087QYI0_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A218UFL5_A0A218UFL5_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A226N2K8_A0A226N2K8_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A226PR82_A0A226PR82_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q50L44_LIGO1_CHICK_9031 and tr_A0A226PPK9_A0A226PPK9_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_M3Z412_M3Z412_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_G1QDN2_G1QDN2_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_G3QV61_G3QV61_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A2J8WFS6_A0A2J8WFS6_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_G1TE00_G1TE00_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_E2REC5_E2REC5_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A2J8LHU0_A0A2J8LHU0_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_D3ZXT1_D3ZXT1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_I3MZI2_I3MZI2_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_H0WIA0_H0WIA0_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and sp_Q9HCJ2_LRC4C_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_F6T8E0_F6T8E0_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_G3SXT6_G3SXT6_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_G7PQD6_G7PQD6_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_M3WQ26_M3WQ26_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A096MRD0_A0A096MRD0_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A0D9SCY3_A0A0D9SCY3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A2K5L2M8_A0A2K5L2M8_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A2K6AXG9_A0A2K6AXG9_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A2K5XNX9_A0A2K5XNX9_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A2R8Z8N1_A0A2R8Z8N1_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A2U4CF65_A0A2U4CF65_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A2U3W956_A0A2U3W956_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A2U3XA41_A0A2U3XA41_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A2Y9JR28_A0A2Y9JR28_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A2Y9P7K7_A0A2Y9P7K7_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9D1T0_LIGO1_MOUSE_10090 and tr_G3V881_G3V881_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9D1T0_LIGO1_MOUSE_10090 and tr_A0A1U8BQR3_A0A1U8BQR3_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Z0V7_M3Z0V7_MUSPF_9669 and tr_A0A2Y9K4E5_A0A2Y9K4E5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z7U8_M3Z7U8_MUSPF_9669 and tr_A0A2Y9L3P0_A0A2Y9L3P0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A1ZBR2_A1ZBR2_DROME_7227 and tr_B4HPT7_B4HPT7_DROSE_7238 are exactly identical! WARNING: Sequences tr_G3R4H8_G3R4H8_GORGO_9595 and sp_Q5RDJ4_LIGO1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3R4H8_G3R4H8_GORGO_9595 and tr_H2R891_H2R891_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R4H8_G3R4H8_GORGO_9595 and sp_Q96FE5_LIGO1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R4H8_G3R4H8_GORGO_9595 and tr_A0A2R8ZAB6_A0A2R8ZAB6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NRN9_G1NRN9_MELGA_9103 and tr_A0A2I0MPS2_A0A2I0MPS2_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A2J8QSP5_A0A2J8QSP5_PANTR_9598 and tr_A0A2R9ARM5_A0A2R9ARM5_PANPA_9597 are exactly identical! WARNING: Sequences tr_B3Y627_B3Y627_PANTR_9598 and sp_Q9TTN0_TLR4_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PZZ8_H2PZZ8_PANTR_9598 and tr_A0A2R8ZGF9_A0A2R8ZGF9_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6YUN2_F6YUN2_HORSE_9796 and tr_F1SHH6_F1SHH6_PIG_9823 are exactly identical! WARNING: Sequences tr_F6YUN2_F6YUN2_HORSE_9796 and tr_D2HRR2_D2HRR2_AILME_9646 are exactly identical! WARNING: Sequences tr_F7AXQ8_F7AXQ8_HORSE_9796 and tr_F1SJ87_F1SJ87_PIG_9823 are exactly identical! WARNING: Sequences tr_F7AXQ8_F7AXQ8_HORSE_9796 and tr_F1MBT2_F1MBT2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F7AXQ8_F7AXQ8_HORSE_9796 and tr_A0A2Y9FWD3_A0A2Y9FWD3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F7AXQ8_F7AXQ8_HORSE_9796 and tr_A0A2Y9T9F6_A0A2Y9T9F6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F7AXQ8_F7AXQ8_HORSE_9796 and tr_A0A384BDF7_A0A384BDF7_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5PLP9_W5PLP9_SHEEP_9940 and tr_F1MXH5_F1MXH5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_I3N319_I3N319_ICTTR_43179 and tr_H0UXQ0_H0UXQ0_CAVPO_10141 are exactly identical! WARNING: Sequences tr_H0VW94_H0VW94_CAVPO_10141 and tr_A0A091DAP7_A0A091DAP7_FUKDA_885580 are exactly identical! WARNING: Sequences tr_H0VW94_H0VW94_CAVPO_10141 and tr_A0A1S3WJC7_A0A1S3WJC7_ERIEU_9365 are exactly identical! WARNING: Sequences tr_H0VW94_H0VW94_CAVPO_10141 and tr_A0A2Y9D8Z3_A0A2Y9D8Z3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F7GJ28_F7GJ28_MACMU_9544 and tr_G7P976_G7P976_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GJ28_F7GJ28_MACMU_9544 and tr_A0A096NMU9_A0A096NMU9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GJ28_F7GJ28_MACMU_9544 and tr_A0A2K5MAW6_A0A2K5MAW6_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GJ28_F7GJ28_MACMU_9544 and tr_A0A2K6BZ95_A0A2K6BZ95_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GJ28_F7GJ28_MACMU_9544 and tr_A0A2K5XA23_A0A2K5XA23_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HGM2_F7HGM2_MACMU_9544 and tr_G7PS63_G7PS63_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HGM2_F7HGM2_MACMU_9544 and tr_A0A096MLM9_A0A096MLM9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HGM2_F7HGM2_MACMU_9544 and tr_A0A2K6AVP4_A0A2K6AVP4_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0YZS5_H0YZS5_TAEGU_59729 and tr_U3KLC0_U3KLC0_FICAL_59894 are exactly identical! WARNING: Sequences tr_G7NTT7_G7NTT7_MACFA_9541 and tr_A0A2K6B798_A0A2K6B798_MACNE_9545 are exactly identical! WARNING: Sequences tr_R7TFD0_R7TFD0_CAPTE_283909 and tr_R7UA69_R7UA69_CAPTE_283909 are exactly identical! WARNING: Sequences tr_A0A151M9V9_A0A151M9V9_ALLMI_8496 and tr_A0A1U7S594_A0A1U7S594_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A226N225_A0A226N225_CALSU_9009 and tr_A0A226NSG7_A0A226NSG7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226N843_A0A226N843_CALSU_9009 and tr_A0A226PUA7_A0A226PUA7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0Q5C8_A0A2D0Q5C8_ICTPU_7998 and tr_A0A2D0Q874_A0A2D0Q874_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5L1R7_A0A2K5L1R7_CERAT_9531 and tr_A0A2K5X9U0_A0A2K5X9U0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4CMV8_A0A2U4CMV8_TURTR_9739 and tr_A0A2Y9NL20_A0A2Y9NL20_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3ZNB4_A0A2U3ZNB4_ODORO_9708 and tr_A0A2U3YXF4_A0A2U3YXF4_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 80 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/O00206/4_raxmlng_ancestral/O00206.raxml.reduced.phy Alignment comprises 1 partitions and 839 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 839 Gaps: 53.95 % Invariant sites: 0.12 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/O00206/4_raxmlng_ancestral/O00206.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/O00206/3_mltree/O00206.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 210 / 16800 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -343640.349691 [00:00:00 -343640.349691] Initial branch length optimization [00:00:02 -342587.651939] Model parameter optimization (eps = 0.100000) [00:01:07] Tree #1, final logLikelihood: -339882.483968 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.153563,0.615813) (0.082114,0.417002) (0.495883,1.016367) (0.268440,1.367877) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/O00206/4_raxmlng_ancestral/O00206.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/O00206/4_raxmlng_ancestral/O00206.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/O00206/4_raxmlng_ancestral/O00206.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/O00206/4_raxmlng_ancestral/O00206.raxml.log Analysis started: 23-Jun-2021 00:51:52 / finished: 23-Jun-2021 00:53:08 Elapsed time: 75.598 seconds Consumed energy: 6.300 Wh