RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 17:20:48 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/F8VTS6/2_msa/F8VTS6_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/F8VTS6/3_mltree/F8VTS6.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/F8VTS6/4_raxmlng_ancestral/F8VTS6 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626099648 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/F8VTS6/2_msa/F8VTS6_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 287 sites WARNING: Sequences sp_Q62158_TRI27_MOUSE_10090 and tr_A0A1U7R5Y1_A0A1U7R5Y1_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9ESN2_TRI39_MOUSE_10090 and sp_Q6MFZ5_TRI39_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9ESN2_TRI39_MOUSE_10090 and tr_I3LZ08_I3LZ08_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q9ESN2_TRI39_MOUSE_10090 and tr_A0A1U7RES0_A0A1U7RES0_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9ESN2_TRI39_MOUSE_10090 and tr_A0A2Y9MXG3_A0A2Y9MXG3_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9ESN2_TRI39_MOUSE_10090 and tr_A0A2Y9EPM4_A0A2Y9EPM4_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9ESN2_TRI39_MOUSE_10090 and tr_A0A384B2Y7_A0A384B2Y7_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3XQ87_M3XQ87_MUSPF_9669 and tr_A0A2U3WQ74_A0A2U3WQ74_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XQ87_M3XQ87_MUSPF_9669 and tr_A0A2U3Y010_A0A2U3Y010_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XQ87_M3XQ87_MUSPF_9669 and tr_A0A2Y9IJR3_A0A2Y9IJR3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_G1QYU1_G1QYU1_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_G3RJV6_G3RJV6_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_H2PIE3_H2PIE3_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_F1P646_F1P646_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and sp_Q1XHU0_TRI39_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_W5PWF8_W5PWF8_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and sp_Q9HCM9_TRI39_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_F7BHH4_F7BHH4_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_A0A2R8MSH2_A0A2R8MSH2_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_I7FTT9_I7FTT9_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_G1M498_G1M498_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_L5KK55_L5KK55_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_M3VXS0_M3VXS0_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_A0A2I3NHT9_A0A2I3NHT9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_A0A0D9R725_A0A0D9R725_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_A0A1U7V4Q4_A0A1U7V4Q4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_A0A2K5P029_A0A2K5P029_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_A0A2K6CGL3_A0A2K6CGL3_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_A0A2K5YXE4_A0A2K5YXE4_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_A0A2U3ZPJ8_A0A2U3ZPJ8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_A0A2U3XSM4_A0A2U3XSM4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_A0A2Y9JZW9_A0A2Y9JZW9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YK97_M3YK97_MUSPF_9669 and tr_A0A384C9P1_A0A384C9P1_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_G3RIJ4_G3RIJ4_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_K7EUW2_K7EUW2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_H2QSK5_H2QSK5_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_H0WWS6_H0WWS6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and sp_P14373_TRI27_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_F7DCK3_F7DCK3_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_A0A096NLL9_A0A096NLL9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_A0A0D9R6T3_A0A0D9R6T3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_A0A1S3GFG4_A0A1S3GFG4_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_A0A2K5N1H5_A0A2K5N1H5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_A0A2K6B8E9_A0A2K6B8E9_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_A0A2K5YG76_A0A2K5YG76_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3HN16_A0A2I3HN16_NOMLE_61853 and tr_A0A2R9BGL3_A0A2R9BGL3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HUE3_A0A2I3HUE3_NOMLE_61853 and tr_H2N3G7_H2N3G7_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HUE3_A0A2I3HUE3_NOMLE_61853 and tr_K7BVH2_K7BVH2_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HUE3_A0A2I3HUE3_NOMLE_61853 and sp_Q96F44_TRI11_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HUE3_A0A2I3HUE3_NOMLE_61853 and tr_A0A2R8ZKT7_A0A2R8ZKT7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2ZXC7_A0A2I2ZXC7_GORGO_9595 and tr_A0A2R9CCX4_A0A2R9CCX4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QXF1_G3QXF1_GORGO_9595 and sp_O00635_TRI38_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R4G7_G3R4G7_GORGO_9595 and tr_A0A2R9BG02_A0A2R9BG02_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2Q2Y1_H2Q2Y1_PANTR_9598 and sp_P19474_RO52_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2Q2Y1_H2Q2Y1_PANTR_9598 and tr_A0A2R9CHV1_A0A2R9CHV1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QSH7_H2QSH7_PANTR_9598 and tr_A0A2R9BIQ5_A0A2R9BIQ5_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6Z810_F6Z810_HORSE_9796 and tr_A0A3Q0E654_A0A3Q0E654_TARSY_1868482 are exactly identical! WARNING: Sequences tr_W5Q7H3_W5Q7H3_SHEEP_9940 and tr_K7GND2_K7GND2_PIG_9823 are exactly identical! WARNING: Sequences tr_W5Q7H3_W5Q7H3_SHEEP_9940 and tr_Q1LZA9_Q1LZA9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5Q7H3_W5Q7H3_SHEEP_9940 and tr_A0A2U3VAG6_A0A2U3VAG6_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5Q7H3_W5Q7H3_SHEEP_9940 and tr_A0A2Y9M7Y8_A0A2Y9M7Y8_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5Q7H3_W5Q7H3_SHEEP_9940 and tr_A0A2Y9EXA2_A0A2Y9EXA2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A287CSH1_A0A287CSH1_ICTTR_43179 and tr_A0A1S3AQB5_A0A1S3AQB5_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A286XZD8_A0A286XZD8_CAVPO_10141 and tr_A0A091D498_A0A091D498_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A1D5QTX6_A0A1D5QTX6_MACMU_9544 and tr_A0A0D9S7K2_A0A0D9S7K2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5QTX6_A0A1D5QTX6_MACMU_9544 and tr_A0A2K5M5M7_A0A2K5M5M7_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6RTU9_F6RTU9_MACMU_9544 and tr_A0A2K6B5B4_A0A2K6B5B4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6U9E0_F6U9E0_MACMU_9544 and tr_G7P3M3_G7P3M3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6W0V1_F6W0V1_MACMU_9544 and tr_G7P6Q0_G7P6Q0_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6W0V1_F6W0V1_MACMU_9544 and tr_A0A096MYJ4_A0A096MYJ4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6W0V1_F6W0V1_MACMU_9544 and tr_A0A2K6BU88_A0A2K6BU88_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6W0V1_F6W0V1_MACMU_9544 and tr_A0A2K5YPH2_A0A2K5YPH2_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7C1A0_F7C1A0_MACMU_9544 and tr_G7PQZ5_G7PQZ5_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7C1A0_F7C1A0_MACMU_9544 and tr_A0A0D9QW70_A0A0D9QW70_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7C1A0_F7C1A0_MACMU_9544 and tr_A0A2K5LKX8_A0A2K5LKX8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7C1A0_F7C1A0_MACMU_9544 and tr_A0A2K6B3T4_A0A2K6B3T4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7C1A0_F7C1A0_MACMU_9544 and tr_A0A2K5YAG4_A0A2K5YAG4_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7GJW9_F7GJW9_MACMU_9544 and tr_A0A096N7V8_A0A096N7V8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GJW9_F7GJW9_MACMU_9544 and tr_A0A2K5MWE8_A0A2K5MWE8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GJW9_F7GJW9_MACMU_9544 and tr_A0A2K6BDB8_A0A2K6BDB8_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GSV0_F7GSV0_MACMU_9544 and tr_A0A096MQG9_A0A096MQG9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GSV0_F7GSV0_MACMU_9544 and tr_A0A0D9QW75_A0A0D9QW75_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GSV0_F7GSV0_MACMU_9544 and tr_A0A2K6D5I5_A0A2K6D5I5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GSV0_F7GSV0_MACMU_9544 and tr_A0A2K5YBE9_A0A2K5YBE9_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HAV2_F7HAV2_MACMU_9544 and tr_G7P2K9_G7P2K9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HAV2_F7HAV2_MACMU_9544 and tr_A0A2K6E3W7_A0A2K6E3W7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G5C3B1_G5C3B1_HETGA_10181 and tr_A0A2R9C250_A0A2R9C250_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3TDE8_G3TDE8_LOXAF_9785 and tr_A0A2Y9QNZ3_A0A2Y9QNZ3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_K9J4S2_K9J4S2_PIG_9823 and tr_A0A2Y9F8S3_A0A2Y9F8S3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_K9J4S2_K9J4S2_PIG_9823 and tr_A0A383Z496_A0A383Z496_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1M9B4_G1M9B4_AILME_9646 and tr_A0A384DEQ3_A0A384DEQ3_URSMA_29073 are exactly identical! WARNING: Sequences tr_G7P2P4_G7P2P4_MACFA_9541 and tr_A0A2K6EB40_A0A2K6EB40_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096MTI7_A0A096MTI7_PAPAN_9555 and tr_A0A2K5N1R9_A0A2K5N1R9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A151M5R0_A0A151M5R0_ALLMI_8496 and tr_A0A1U8DHU9_A0A1U8DHU9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MYS2_A0A151MYS2_ALLMI_8496 and tr_A0A3Q0FWR2_A0A3Q0FWR2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NTN0_A0A151NTN0_ALLMI_8496 and tr_A0A3Q0FQS6_A0A3Q0FQS6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091JG56_A0A091JG56_EGRGA_188379 and tr_A0A091UZ29_A0A091UZ29_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091V0M9_A0A091V0M9_NIPNI_128390 and tr_A0A087R149_A0A087R149_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091V6Y1_A0A091V6Y1_OPIHO_30419 and tr_A0A091GQX6_A0A091GQX6_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091V6Y1_A0A091V6Y1_OPIHO_30419 and tr_A0A0A0AK23_A0A0A0AK23_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2D0QFK5_A0A2D0QFK5_ICTPU_7998 and tr_W5U984_W5U984_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5L9F1_A0A2K5L9F1_CERAT_9531 and tr_A0A2K6A532_A0A2K6A532_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3V9R2_A0A2U3V9R2_TURTR_9739 and tr_A0A2Y9MAZ9_A0A2Y9MAZ9_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 103 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/F8VTS6/4_raxmlng_ancestral/F8VTS6.raxml.reduced.phy Alignment comprises 1 partitions and 287 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 287 Gaps: 14.13 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/F8VTS6/4_raxmlng_ancestral/F8VTS6.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/F8VTS6/3_mltree/F8VTS6.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 72 / 5760 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -130333.532409 [00:00:00 -130333.532409] Initial branch length optimization [00:00:01 -128714.029538] Model parameter optimization (eps = 0.100000) [00:00:33] Tree #1, final logLikelihood: -128411.664472 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.110992,0.286237) (0.151434,0.424235) (0.371181,0.832776) (0.366392,1.623601) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/F8VTS6/4_raxmlng_ancestral/F8VTS6.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/F8VTS6/4_raxmlng_ancestral/F8VTS6.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/F8VTS6/4_raxmlng_ancestral/F8VTS6.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/F8VTS6/4_raxmlng_ancestral/F8VTS6.raxml.log Analysis started: 12-Jul-2021 17:20:48 / finished: 12-Jul-2021 17:21:24 Elapsed time: 36.695 seconds Consumed energy: 3.305 Wh