RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 19-Jul-2021 13:45:51 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/F5H284/2_msa/F5H284_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/F5H284/3_mltree/F5H284.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/F5H284/4_raxmlng_ancestral/F5H284 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626691551 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/F5H284/2_msa/F5H284_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 164 sites WARNING: Sequences tr_M3XX23_M3XX23_MUSPF_9669 and tr_G1M2Q6_G1M2Q6_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XX23_M3XX23_MUSPF_9669 and tr_A0A2Y9J4N5_A0A2Y9J4N5_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P25007_PPIA_DROME_7227 and tr_B4IF57_B4IF57_DROSE_7238 are exactly identical! WARNING: Sequences sp_Q0ZQK7_PPIA_NOMLE_61853 and sp_Q0ZQL0_PPIA_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q0ZQK7_PPIA_NOMLE_61853 and sp_Q0ZQL1_PPIA_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q0ZQK7_PPIA_NOMLE_61853 and sp_P62937_PPIA_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q0ZQK7_PPIA_NOMLE_61853 and sp_P62940_PPIA_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q0ZQK7_PPIA_NOMLE_61853 and tr_G7PWP2_G7PWP2_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q0ZQK7_PPIA_NOMLE_61853 and sp_P62941_PPIA_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q0ZQK7_PPIA_NOMLE_61853 and tr_A0A0D9RT22_A0A0D9RT22_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q0ZQK7_PPIA_NOMLE_61853 and sp_Q0ZQL2_PPIA_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3HHA7_G3HHA7_CRIGR_10029 and tr_A0A1S3ARB8_A0A1S3ARB8_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G3HHA7_G3HHA7_CRIGR_10029 and tr_A0A1U7RBG8_A0A1U7RBG8_MESAU_10036 are exactly identical! WARNING: Sequences tr_B2WMD5_B2WMD5_PYRTR_426418 and tr_A0A2W1F917_A0A2W1F917_9PLEO_45151 are exactly identical! WARNING: Sequences tr_H2N7V6_H2N7V6_PONAB_9601 and sp_Q9UNP9_PPIE_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2N7V6_H2N7V6_PONAB_9601 and tr_A0A1S3F855_A0A1S3F855_DIPOR_10020 are exactly identical! WARNING: Sequences tr_H2N7V6_H2N7V6_PONAB_9601 and tr_A0A2K5M8Y8_A0A2K5M8Y8_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2N7V6_H2N7V6_PONAB_9601 and tr_A0A2K6BSU2_A0A2K6BSU2_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2N7V6_H2N7V6_PONAB_9601 and tr_A0A2K5ZZ93_A0A2K5ZZ93_MANLE_9568 are exactly identical! WARNING: Sequences tr_H2N7V6_H2N7V6_PONAB_9601 and tr_A0A2Y9DC96_A0A2Y9DC96_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H2NAG4_H2NAG4_PONAB_9601 and tr_H2Q253_H2Q253_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2NAG4_H2NAG4_PONAB_9601 and sp_P30405_PPIF_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A088A8D4_A0A088A8D4_APIME_7460 and tr_A0A2A3EAB9_A0A2A3EAB9_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NTK3_A0A158NTK3_ATTCE_12957 and tr_A0A195BR67_A0A195BR67_9HYME_520822 are exactly identical! WARNING: Sequences sp_A0A075B759_PAL4E_HUMAN_9606 and sp_P0DN26_PAL4F_HUMAN_9606 are exactly identical! WARNING: Sequences tr_I0J180_I0J180_ORYNI_4536 and tr_Q1KL27_Q1KL27_ORYSI_39946 are exactly identical! WARNING: Sequences tr_I0J180_I0J180_ORYNI_4536 and tr_I1NWP3_I1NWP3_ORYGL_4538 are exactly identical! WARNING: Sequences tr_I0J180_I0J180_ORYNI_4536 and tr_A0A0E0CE19_A0A0E0CE19_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_I0J180_I0J180_ORYNI_4536 and tr_I0J181_I0J181_ORYRU_4529 are exactly identical! WARNING: Sequences tr_I0J180_I0J180_ORYNI_4536 and tr_I0J182_I0J182_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I0J180_I0J180_ORYNI_4536 and tr_Q6ZH98_Q6ZH98_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0K0K0J4_A0A0K0K0J4_BRUMA_6279 and tr_A0A0N4T521_A0A0N4T521_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0K0J4_A0A0K0K0J4_BRUMA_6279 and tr_A0A0R3QVS8_A0A0R3QVS8_9BILA_42155 are exactly identical! WARNING: Sequences tr_A2Z498_A2Z498_ORYSI_39946 and tr_I1QRI4_I1QRI4_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2Z498_A2Z498_ORYSI_39946 and tr_A0A0E0QVE1_A0A0E0QVE1_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A2Z498_A2Z498_ORYSI_39946 and tr_Q651B0_Q651B0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F4P4Z0_F4P4Z0_BATDJ_684364 and tr_A0A177WG19_A0A177WG19_BATDE_403673 are exactly identical! WARNING: Sequences sp_P62936_PPIA_PIG_9823 and sp_P62935_PPIA_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P62936_PPIA_PIG_9823 and tr_A0A2U3WX41_A0A2U3WX41_ODORO_9708 are exactly identical! WARNING: Sequences tr_A8XTM4_A8XTM4_CAEBR_6238 and tr_A0A2G5SIA4_A0A2G5SIA4_9PELO_1611254 are exactly identical! WARNING: Sequences tr_B3RVS0_B3RVS0_TRIAD_10228 and tr_A0A369SJS9_A0A369SJS9_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3S234_B3S234_TRIAD_10228 and tr_A0A369SGW4_A0A369SGW4_9METZ_287889 are exactly identical! WARNING: Sequences tr_M4CSM2_M4CSM2_BRARP_51351 and tr_A0A078GRH6_A0A078GRH6_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4D2M5_M4D2M5_BRARP_51351 and tr_A0A078DMP0_A0A078DMP0_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4EXN7_M4EXN7_BRARP_51351 and tr_A0A078GAL1_A0A078GAL1_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4F885_M4F885_BRARP_51351 and tr_A0A078IDN6_A0A078IDN6_BRANA_3708 are exactly identical! WARNING: Sequences tr_U3JWP1_U3JWP1_FICAL_59894 and tr_A0A091F797_A0A091F797_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3JWP1_U3JWP1_FICAL_59894 and tr_A0A093QP66_A0A093QP66_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3JWP1_U3JWP1_FICAL_59894 and tr_A0A0A0AHF8_A0A0A0AHF8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_W2PDE7_W2PDE7_PHYPN_761204 and tr_A0A0W8C5L5_A0A0W8C5L5_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2PDE7_W2PDE7_PHYPN_761204 and tr_W2JRD7_W2JRD7_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A044R7X9_A0A044R7X9_ONCVO_6282 and tr_A0A182EG70_A0A182EG70_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0D3HAB2_A0A0D3HAB2_9ORYZ_65489 and tr_A0A0E0B6X2_A0A0E0B6X2_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A067EFK3_A0A067EFK3_CITSI_2711 and tr_V4VS87_V4VS87_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A096P4H0_A0A096P4H0_PAPAN_9555 and tr_A0A0D9RAD8_A0A0D9RAD8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096P4H0_A0A096P4H0_PAPAN_9555 and tr_A0A2K5NGX0_A0A2K5NGX0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096P4H0_A0A096P4H0_PAPAN_9555 and tr_A0A2K6BAX8_A0A2K6BAX8_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A078GNF2_A0A078GNF2_BRANA_3708 and tr_A0A0D3E317_A0A0D3E317_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0D2TQ56_A0A0D2TQ56_GOSRA_29730 and tr_A0A1U8IUI3_A0A1U8IUI3_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2TWE2_A0A0D2TWE2_GOSRA_29730 and tr_A0A1U8N910_A0A1U8N910_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F8W8Y4_A0A0F8W8Y4_9EURO_308745 and tr_A0A2T5M0F3_A0A2T5M0F3_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0N4TIF3_A0A0N4TIF3_BRUPA_6280 and tr_A0A0R3QJZ0_A0A0R3QJZ0_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A091EA77_A0A091EA77_CORBR_85066 and tr_A0A091KE67_A0A091KE67_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091JF81_A0A091JF81_EGRGA_188379 and tr_A0A091UM35_A0A091UM35_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JF81_A0A091JF81_EGRGA_188379 and tr_A0A087QUL8_A0A087QUL8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A093PD56_A0A093PD56_9PASS_328815 and tr_A0A091UQ07_A0A091UQ07_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A093PD56_A0A093PD56_9PASS_328815 and tr_A0A093FW45_A0A093FW45_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2I0LJZ6_A0A2I0LJZ6_COLLI_8932 and tr_A0A1V4JHP5_A0A1V4JHP5_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A151XAA5_A0A151XAA5_9HYME_64791 and tr_A0A195AUN3_A0A195AUN3_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A1S4A196_A0A1S4A196_TOBAC_4097 and tr_A0A1U7XG51_A0A1U7XG51_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4ABZ9_A0A1S4ABZ9_TOBAC_4097 and tr_A0A1U7VBP4_A0A1U7VBP4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3HFS1_A0A1S3HFS1_LINUN_7574 and tr_A0A1S3HFU7_A0A1S3HFU7_LINUN_7574 are exactly identical! WARNING: Sequences tr_B5DG94_B5DG94_SALSA_8030 and tr_A0A060Y0S7_A0A060Y0S7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MEL2_A0A226MEL2_CALSU_9009 and tr_A0A226P3A0_A0A226P3A0_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2G4T8H0_A0A2G4T8H0_9FUNG_1340429 and tr_A0A367JU04_A0A367JU04_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2U3V8D9_A0A2U3V8D9_TURTR_9739 and tr_A0A2Y9PUE1_A0A2Y9PUE1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V8D9_A0A2U3V8D9_TURTR_9739 and tr_A0A384AK70_A0A384AK70_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3W5L1_A0A2U3W5L1_ODORO_9708 and tr_A0A2U3XUA6_A0A2U3XUA6_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 78 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/F5H284/4_raxmlng_ancestral/F5H284.raxml.reduced.phy Alignment comprises 1 partitions and 164 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 164 Gaps: 1.96 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/F5H284/4_raxmlng_ancestral/F5H284.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/F5H284/3_mltree/F5H284.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 41 / 3280 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -55485.111636 [00:00:00 -55485.111636] Initial branch length optimization [00:00:00 -55368.342597] Model parameter optimization (eps = 0.100000) [00:00:17] Tree #1, final logLikelihood: -55202.001142 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.218824,0.322084) (0.230109,0.556910) (0.367414,0.933939) (0.183653,2.495078) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/F5H284/4_raxmlng_ancestral/F5H284.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/F5H284/4_raxmlng_ancestral/F5H284.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/F5H284/4_raxmlng_ancestral/F5H284.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/F5H284/4_raxmlng_ancestral/F5H284.raxml.log Analysis started: 19-Jul-2021 13:45:51 / finished: 19-Jul-2021 13:46:10 Elapsed time: 18.701 seconds