RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 07-Jul-2021 13:55:31 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A8MXY4/2_msa/A8MXY4_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A8MXY4/3_mltree/A8MXY4 --seed 2 --threads 8 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (8 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A8MXY4/2_msa/A8MXY4_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 922 sites

WARNING: Sequences tr_A0A1D5QC17_A0A1D5QC17_MACMU_9544 and tr_A0A2K6BUH3_A0A2K6BUH3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6UR85_F6UR85_MACMU_9544 and tr_A0A2K6ADH3_A0A2K6ADH3_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7GTJ8_F7GTJ8_MACMU_9544 and tr_A0A2K6BJH0_A0A2K6BJH0_MACNE_9545 are exactly identical!
WARNING: Duplicate sequences found: 3

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A8MXY4/3_mltree/A8MXY4.raxml.reduced.phy

Alignment comprises 1 partitions and 922 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 922 / 922
Gaps: 21.05 %
Invariant sites: 0.22 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A8MXY4/3_mltree/A8MXY4.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 4 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 231 / 18480
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -1155271.276451] Initial branch length optimization
[00:00:06 -1033957.018564] Model parameter optimization (eps = 10.000000)
[00:00:51 -1031470.743382] AUTODETECT spr round 1 (radius: 5)
[00:04:17 -855516.661947] AUTODETECT spr round 2 (radius: 10)
[00:08:11 -657694.621432] AUTODETECT spr round 3 (radius: 15)
[00:12:45 -574951.383387] AUTODETECT spr round 4 (radius: 20)
[00:17:26 -548080.725592] AUTODETECT spr round 5 (radius: 25)
[00:23:36 -544780.109145] SPR radius for FAST iterations: 25 (autodetect)
[00:23:36 -544780.109145] Model parameter optimization (eps = 3.000000)
[00:24:02 -544526.129579] FAST spr round 1 (radius: 25)
[00:30:26 -503777.753212] FAST spr round 2 (radius: 25)
[00:35:11 -501061.415752] FAST spr round 3 (radius: 25)
[00:39:15 -500845.821725] FAST spr round 4 (radius: 25)
[00:42:52 -500793.212518] FAST spr round 5 (radius: 25)
[00:46:04 -500778.319309] FAST spr round 6 (radius: 25)
[00:49:05 -500765.648337] FAST spr round 7 (radius: 25)
[00:52:00 -500760.540419] FAST spr round 8 (radius: 25)
[00:54:52 -500745.715558] FAST spr round 9 (radius: 25)
[00:57:42 -500726.495605] FAST spr round 10 (radius: 25)
[01:00:19 -500709.285605] FAST spr round 11 (radius: 25)
[01:02:54 -500709.285461] Model parameter optimization (eps = 1.000000)
[01:03:13 -500689.857453] SLOW spr round 1 (radius: 5)
[01:07:15 -500563.508729] SLOW spr round 2 (radius: 5)
[01:11:02 -500556.667839] SLOW spr round 3 (radius: 5)
[01:14:40 -500556.667803] SLOW spr round 4 (radius: 10)
[01:18:38 -500518.949919] SLOW spr round 5 (radius: 5)
[01:22:57 -500510.314658] SLOW spr round 6 (radius: 5)
[01:26:46 -500509.097224] SLOW spr round 7 (radius: 5)
[01:30:23 -500509.097171] SLOW spr round 8 (radius: 10)
[01:34:17 -500509.097170] SLOW spr round 9 (radius: 15)
[01:42:00 -500501.416048] SLOW spr round 10 (radius: 5)
[01:46:31 -500487.271170] SLOW spr round 11 (radius: 5)
[01:50:39 -500479.718030] SLOW spr round 12 (radius: 5)
[01:54:24 -500478.450469] SLOW spr round 13 (radius: 5)
[01:58:02 -500478.450414] SLOW spr round 14 (radius: 10)
[02:02:00 -500478.450413] SLOW spr round 15 (radius: 15)
[02:09:58 -500478.450412] SLOW spr round 16 (radius: 20)
[02:20:49 -500478.450412] SLOW spr round 17 (radius: 25)
[02:23:36] [worker #1] ML tree search #2, logLikelihood: -500475.720747
[02:33:30 -500478.450411] Model parameter optimization (eps = 0.100000)

[02:33:46] [worker #0] ML tree search #1, logLikelihood: -500478.246630

[02:33:46 -1155778.471693] Initial branch length optimization
[02:33:51 -1032577.201447] Model parameter optimization (eps = 10.000000)
[02:34:32 -1030103.808967] AUTODETECT spr round 1 (radius: 5)
[02:38:00 -856480.494795] AUTODETECT spr round 2 (radius: 10)
[02:41:53 -641853.690292] AUTODETECT spr round 3 (radius: 15)
[02:46:34 -567451.962691] AUTODETECT spr round 4 (radius: 20)
[02:51:28 -550703.525345] AUTODETECT spr round 5 (radius: 25)
[02:56:34 -547303.381676] SPR radius for FAST iterations: 25 (autodetect)
[02:56:34 -547303.381676] Model parameter optimization (eps = 3.000000)
[02:57:03 -547027.527592] FAST spr round 1 (radius: 25)
[03:03:18 -508320.887105] FAST spr round 2 (radius: 25)
[03:08:09 -504736.670089] FAST spr round 3 (radius: 25)
[03:12:16 -502407.743898] FAST spr round 4 (radius: 25)
[03:15:59 -501376.778458] FAST spr round 5 (radius: 25)
[03:19:13 -501360.706196] FAST spr round 6 (radius: 25)
[03:22:09 -501360.705720] Model parameter optimization (eps = 1.000000)
[03:22:30 -501342.847585] SLOW spr round 1 (radius: 5)
[03:26:41 -501142.630432] SLOW spr round 2 (radius: 5)
[03:30:44 -501046.834599] SLOW spr round 3 (radius: 5)
[03:34:23 -501046.202455] SLOW spr round 4 (radius: 5)
[03:38:01 -501046.202217] SLOW spr round 5 (radius: 10)
[03:42:03 -501029.363093] SLOW spr round 6 (radius: 5)
[03:46:31 -501004.712886] SLOW spr round 7 (radius: 5)
[03:50:27 -500995.576876] SLOW spr round 8 (radius: 5)
[03:54:10 -500995.576654] SLOW spr round 9 (radius: 10)
[03:58:14 -500986.956075] SLOW spr round 10 (radius: 5)
[04:02:40 -500971.243364] SLOW spr round 11 (radius: 5)
[04:06:33 -500969.567220] SLOW spr round 12 (radius: 5)
[04:10:15 -500969.567198] SLOW spr round 13 (radius: 10)
[04:14:15 -500969.387304] SLOW spr round 14 (radius: 5)
[04:18:36 -500955.308253] SLOW spr round 15 (radius: 5)
[04:22:30 -500952.939031] SLOW spr round 16 (radius: 5)
[04:26:13 -500952.939029] SLOW spr round 17 (radius: 10)
[04:30:13 -500952.939028] SLOW spr round 18 (radius: 15)
[04:37:59 -500947.286866] SLOW spr round 19 (radius: 5)
[04:42:31 -500937.819039] SLOW spr round 20 (radius: 5)
[04:46:26 -500937.819034] SLOW spr round 21 (radius: 10)
[04:50:36 -500937.819033] SLOW spr round 22 (radius: 15)
[04:58:08 -500937.819032] SLOW spr round 23 (radius: 20)
[05:09:10 -500925.158492] SLOW spr round 24 (radius: 5)
[05:13:39 -500923.702147] SLOW spr round 25 (radius: 5)
[05:17:36 -500923.313651] SLOW spr round 26 (radius: 5)
[05:21:18 -500923.313642] SLOW spr round 27 (radius: 10)
[05:25:17 -500923.313641] SLOW spr round 28 (radius: 15)
[05:30:32] [worker #1] ML tree search #4, logLikelihood: -500472.902405
[05:32:56 -500923.313640] SLOW spr round 29 (radius: 20)
[05:43:06 -500923.313639] SLOW spr round 30 (radius: 25)
[05:54:56 -500923.313639] Model parameter optimization (eps = 0.100000)

[05:55:07] [worker #0] ML tree search #3, logLikelihood: -500923.144975

[05:55:07 -1154595.368684] Initial branch length optimization
[05:55:11 -1032537.369250] Model parameter optimization (eps = 10.000000)
[05:56:18 -1030019.710716] AUTODETECT spr round 1 (radius: 5)
[05:59:31 -852299.862591] AUTODETECT spr round 2 (radius: 10)
[06:03:08 -667607.332666] AUTODETECT spr round 3 (radius: 15)
[06:07:19 -572595.612827] AUTODETECT spr round 4 (radius: 20)
[06:11:48 -551425.771593] AUTODETECT spr round 5 (radius: 25)
[06:16:55 -545412.069020] SPR radius for FAST iterations: 25 (autodetect)
[06:16:55 -545412.069020] Model parameter optimization (eps = 3.000000)
[06:17:29 -544957.163414] FAST spr round 1 (radius: 25)
[06:23:26 -502668.138771] FAST spr round 2 (radius: 25)
[06:27:47 -501018.243087] FAST spr round 3 (radius: 25)
[06:31:35 -500911.168938] FAST spr round 4 (radius: 25)
[06:34:47 -500871.755936] FAST spr round 5 (radius: 25)
[06:37:45 -500855.778696] FAST spr round 6 (radius: 25)
[06:40:35 -500831.622645] FAST spr round 7 (radius: 25)
[06:43:17 -500827.055784] FAST spr round 8 (radius: 25)
[06:45:50 -500827.055652] Model parameter optimization (eps = 1.000000)
[06:46:08 -500807.389515] SLOW spr round 1 (radius: 5)
[06:49:48 -500671.941055] SLOW spr round 2 (radius: 5)
[06:53:20 -500653.029409] SLOW spr round 3 (radius: 5)
[06:56:48 -500649.341269] SLOW spr round 4 (radius: 5)
[07:00:08 -500638.046379] SLOW spr round 5 (radius: 5)
[07:03:36 -500621.257889] SLOW spr round 6 (radius: 5)
[07:06:50 -500621.257626] SLOW spr round 7 (radius: 10)
[07:10:25 -500617.142760] SLOW spr round 8 (radius: 5)
[07:14:21 -500610.874420] SLOW spr round 9 (radius: 5)
[07:17:50 -500609.965473] SLOW spr round 10 (radius: 5)
[07:21:11 -500609.965458] SLOW spr round 11 (radius: 10)
[07:24:49 -500609.965457] SLOW spr round 12 (radius: 15)
[07:32:32 -500603.197065] SLOW spr round 13 (radius: 5)
[07:36:43 -500601.022904] SLOW spr round 14 (radius: 5)
[07:40:18 -500600.541881] SLOW spr round 15 (radius: 5)
[07:43:43 -500600.541877] SLOW spr round 16 (radius: 10)
[07:47:33 -500600.541876] SLOW spr round 17 (radius: 15)
[07:55:06 -500600.541875] SLOW spr round 18 (radius: 20)
[08:05:23 -500600.541874] SLOW spr round 19 (radius: 25)
[08:17:46 -500587.098735] SLOW spr round 20 (radius: 5)
[08:22:05 -500581.255807] SLOW spr round 21 (radius: 5)
[08:25:43 -500581.255524] SLOW spr round 22 (radius: 10)
[08:29:34] [worker #1] ML tree search #6, logLikelihood: -500484.176823
[08:29:36 -500581.255522] SLOW spr round 23 (radius: 15)
[08:37:39 -500581.255520] SLOW spr round 24 (radius: 20)
[08:49:06 -500581.255519] SLOW spr round 25 (radius: 25)
[09:02:44 -500581.255518] Model parameter optimization (eps = 0.100000)

[09:02:59] [worker #0] ML tree search #5, logLikelihood: -500581.168707

[09:02:59 -1157985.749402] Initial branch length optimization
[09:03:03 -1034998.015611] Model parameter optimization (eps = 10.000000)
[09:03:48 -1032433.289482] AUTODETECT spr round 1 (radius: 5)
[09:07:13 -863635.333131] AUTODETECT spr round 2 (radius: 10)
[09:11:04 -661033.263072] AUTODETECT spr round 3 (radius: 15)
[09:15:21 -566486.328546] AUTODETECT spr round 4 (radius: 20)
[09:20:15 -554650.215013] AUTODETECT spr round 5 (radius: 25)
[09:25:41 -550150.151412] SPR radius for FAST iterations: 25 (autodetect)
[09:25:41 -550150.151412] Model parameter optimization (eps = 3.000000)
[09:26:11 -549826.601347] FAST spr round 1 (radius: 25)
[09:32:47 -503867.314765] FAST spr round 2 (radius: 25)
[09:37:02 -501187.806843] FAST spr round 3 (radius: 25)
[09:40:41 -501001.293814] FAST spr round 4 (radius: 25)
[09:43:53 -500910.891216] FAST spr round 5 (radius: 25)
[09:46:47 -500893.911832] FAST spr round 6 (radius: 25)
[09:49:40 -500893.911566] Model parameter optimization (eps = 1.000000)
[09:49:59 -500866.777543] SLOW spr round 1 (radius: 5)
[09:53:53 -500685.744497] SLOW spr round 2 (radius: 5)
[09:57:35 -500659.689416] SLOW spr round 3 (radius: 5)
[10:01:23 -500626.433140] SLOW spr round 4 (radius: 5)
[10:04:53 -500622.993250] SLOW spr round 5 (radius: 5)
[10:08:21 -500622.993211] SLOW spr round 6 (radius: 10)
[10:12:20 -500591.214523] SLOW spr round 7 (radius: 5)
[10:16:44 -500571.165109] SLOW spr round 8 (radius: 5)
[10:20:28 -500571.164628] SLOW spr round 9 (radius: 10)
[10:24:31 -500569.142508] SLOW spr round 10 (radius: 5)
[10:28:48 -500564.040157] SLOW spr round 11 (radius: 5)
[10:32:46 -500552.446581] SLOW spr round 12 (radius: 5)
[10:36:26 -500552.446505] SLOW spr round 13 (radius: 10)
[10:40:21 -500551.124577] SLOW spr round 14 (radius: 5)
[10:44:38 -500546.980323] SLOW spr round 15 (radius: 5)
[10:48:25 -500546.980284] SLOW spr round 16 (radius: 10)
[10:52:26 -500545.724044] SLOW spr round 17 (radius: 5)
[10:56:44 -500543.435630] SLOW spr round 18 (radius: 5)
[11:00:33 -500543.435317] SLOW spr round 19 (radius: 10)
[11:04:34 -500543.435316] SLOW spr round 20 (radius: 15)
[11:12:11 -500530.250102] SLOW spr round 21 (radius: 5)
[11:16:17 -500521.576247] SLOW spr round 22 (radius: 5)
[11:20:07 -500506.137056] SLOW spr round 23 (radius: 5)
[11:23:52 -500499.050362] SLOW spr round 24 (radius: 5)
[11:27:24 -500489.965121] SLOW spr round 25 (radius: 5)
[11:30:51 -500488.721966] SLOW spr round 26 (radius: 5)
[11:34:12 -500488.721767] SLOW spr round 27 (radius: 10)
[11:38:03 -500484.919482] SLOW spr round 28 (radius: 5)
[11:42:13] [worker #1] ML tree search #8, logLikelihood: -500497.991454
[11:42:26 -500473.029267] SLOW spr round 29 (radius: 5)
[11:46:15 -500472.533671] SLOW spr round 30 (radius: 5)
[11:49:47 -500472.533557] SLOW spr round 31 (radius: 10)
[11:53:39 -500472.533556] SLOW spr round 32 (radius: 15)
[12:01:06 -500472.533555] SLOW spr round 33 (radius: 20)
[12:11:46 -500461.647177] SLOW spr round 34 (radius: 5)
[12:16:13 -500460.737995] SLOW spr round 35 (radius: 5)
[12:20:07 -500460.737962] SLOW spr round 36 (radius: 10)
[12:23:55 -500460.737961] SLOW spr round 37 (radius: 15)
[12:31:26 -500460.737960] SLOW spr round 38 (radius: 20)
[12:42:37 -500460.737959] SLOW spr round 39 (radius: 25)
[12:55:51 -500446.029582] SLOW spr round 40 (radius: 5)
[13:00:19 -500445.544894] SLOW spr round 41 (radius: 5)
[13:04:01 -500445.544092] SLOW spr round 42 (radius: 10)
[13:08:01 -500445.544089] SLOW spr round 43 (radius: 15)
[13:15:27 -500445.544088] SLOW spr round 44 (radius: 20)
[13:26:36 -500445.544087] SLOW spr round 45 (radius: 25)
[13:39:45 -500445.544086] Model parameter optimization (eps = 0.100000)

[13:39:59] [worker #0] ML tree search #7, logLikelihood: -500445.261698

[13:39:59 -1156912.206618] Initial branch length optimization
[13:40:03 -1033167.334074] Model parameter optimization (eps = 10.000000)
[13:40:52 -1030639.311817] AUTODETECT spr round 1 (radius: 5)
[13:44:16 -859907.691699] AUTODETECT spr round 2 (radius: 10)
[13:48:06 -649811.085608] AUTODETECT spr round 3 (radius: 15)
[13:52:48 -556882.126342] AUTODETECT spr round 4 (radius: 20)
[13:58:01 -545341.521184] AUTODETECT spr round 5 (radius: 25)
[14:03:52 -541643.078160] SPR radius for FAST iterations: 25 (autodetect)
[14:03:52 -541643.078160] Model parameter optimization (eps = 3.000000)
[14:04:22 -541322.107086] FAST spr round 1 (radius: 25)
[14:10:49 -502831.777909] FAST spr round 2 (radius: 25)
[14:15:43 -501159.653145] FAST spr round 3 (radius: 25)
[14:19:50 -500950.234868] FAST spr round 4 (radius: 25)
[14:23:33 -500882.900567] FAST spr round 5 (radius: 25)
[14:26:47 -500856.599525] FAST spr round 6 (radius: 25)
[14:29:48 -500849.575194] FAST spr round 7 (radius: 25)
[14:32:37 -500849.575180] Model parameter optimization (eps = 1.000000)
[14:33:00 -500843.993025] SLOW spr round 1 (radius: 5)
[14:37:14 -500698.433883] SLOW spr round 2 (radius: 5)
[14:40:59 -500691.174936] SLOW spr round 3 (radius: 5)
[14:44:34 -500691.174512] SLOW spr round 4 (radius: 10)
[14:48:34 -500678.989420] SLOW spr round 5 (radius: 5)
[14:49:09] [worker #1] ML tree search #10, logLikelihood: -500450.858231
[14:52:58 -500673.282974] SLOW spr round 6 (radius: 5)
[14:56:50 -500671.407487] SLOW spr round 7 (radius: 5)
[15:00:32 -500671.405393] SLOW spr round 8 (radius: 10)
[15:04:34 -500665.029904] SLOW spr round 9 (radius: 5)
[15:09:03 -500631.154869] SLOW spr round 10 (radius: 5)
[15:13:07 -500625.382063] SLOW spr round 11 (radius: 5)
[15:16:51 -500622.225509] SLOW spr round 12 (radius: 5)
[15:20:26 -500622.224697] SLOW spr round 13 (radius: 10)
[15:24:26 -500619.497958] SLOW spr round 14 (radius: 5)
[15:28:55 -500595.871749] SLOW spr round 15 (radius: 5)
[15:32:47 -500595.377307] SLOW spr round 16 (radius: 5)
[15:36:26 -500595.377233] SLOW spr round 17 (radius: 10)
[15:40:23 -500595.277338] SLOW spr round 18 (radius: 15)
[15:48:27 -500572.730722] SLOW spr round 19 (radius: 5)
[15:52:56 -500563.586226] SLOW spr round 20 (radius: 5)
[15:56:52 -500563.586210] SLOW spr round 21 (radius: 10)
[16:01:04 -500563.586209] SLOW spr round 22 (radius: 15)
[16:08:54 -500563.586208] SLOW spr round 23 (radius: 20)
[16:19:57 -500554.210442] SLOW spr round 24 (radius: 5)
[16:24:24 -500554.210423] SLOW spr round 25 (radius: 10)
[16:29:23 -500552.715550] SLOW spr round 26 (radius: 5)
[16:33:35 -500541.542997] SLOW spr round 27 (radius: 5)
[16:37:26 -500536.594423] SLOW spr round 28 (radius: 5)
[16:41:06 -500536.594401] SLOW spr round 29 (radius: 10)
[16:45:06 -500536.594399] SLOW spr round 30 (radius: 15)
[16:53:13 -500536.594398] SLOW spr round 31 (radius: 20)
[17:04:28 -500536.594397] SLOW spr round 32 (radius: 25)
[17:17:18 -500536.594396] Model parameter optimization (eps = 0.100000)

[17:17:31] [worker #0] ML tree search #9, logLikelihood: -500536.387669

[17:17:31 -1155736.245958] Initial branch length optimization
[17:17:35 -1033289.095331] Model parameter optimization (eps = 10.000000)
[17:18:25 -1030745.765224] AUTODETECT spr round 1 (radius: 5)
[17:21:53 -870677.643211] AUTODETECT spr round 2 (radius: 10)
[17:25:45 -659472.442764] AUTODETECT spr round 3 (radius: 15)
[17:30:06 -576330.751568] AUTODETECT spr round 4 (radius: 20)
[17:34:51 -557413.278002] AUTODETECT spr round 5 (radius: 25)
[17:40:26 -545172.785203] SPR radius for FAST iterations: 25 (autodetect)
[17:40:26 -545172.785203] Model parameter optimization (eps = 3.000000)
[17:40:59 -544875.501020] FAST spr round 1 (radius: 25)
[17:47:31 -503034.022822] FAST spr round 2 (radius: 25)
[17:52:17 -501165.768239] FAST spr round 3 (radius: 25)
[17:56:22 -500857.198567] FAST spr round 4 (radius: 25)
[17:59:56 -500790.026294] FAST spr round 5 (radius: 25)
[18:03:05 -500779.954528] FAST spr round 6 (radius: 25)
[18:06:00 -500779.954516] Model parameter optimization (eps = 1.000000)
[18:06:23 -500769.133167] SLOW spr round 1 (radius: 5)
[18:10:38 -500610.924603] SLOW spr round 2 (radius: 5)
[18:14:35 -500555.132474] SLOW spr round 3 (radius: 5)
[18:18:19 -500549.129093] SLOW spr round 4 (radius: 5)
[18:21:52 -500549.128921] SLOW spr round 5 (radius: 10)
[18:25:45 -500541.925693] SLOW spr round 6 (radius: 5)
[18:29:57 -500537.248525] SLOW spr round 7 (radius: 5)
[18:33:45 -500537.199967] SLOW spr round 8 (radius: 10)
[18:37:44 -500537.199857] SLOW spr round 9 (radius: 15)
[18:45:20 -500530.523258] SLOW spr round 10 (radius: 5)
[18:47:45] [worker #1] ML tree search #12, logLikelihood: -500476.767856
[18:49:53 -500518.866278] SLOW spr round 11 (radius: 5)
[18:53:49 -500518.625295] SLOW spr round 12 (radius: 5)
[18:57:31 -500518.625288] SLOW spr round 13 (radius: 10)
[19:01:27 -500511.092693] SLOW spr round 14 (radius: 5)
[19:05:44 -500502.718652] SLOW spr round 15 (radius: 5)
[19:09:15 -500502.718642] SLOW spr round 16 (radius: 10)
[19:12:55 -500502.718641] SLOW spr round 17 (radius: 15)
[19:19:52 -500502.718641] SLOW spr round 18 (radius: 20)
[19:29:44 -500491.316458] SLOW spr round 19 (radius: 5)
[19:34:00 -500491.316366] SLOW spr round 20 (radius: 10)
[19:38:45 -500491.316365] SLOW spr round 21 (radius: 15)
[19:45:26 -500491.316364] SLOW spr round 22 (radius: 20)
[19:55:51 -500491.316364] SLOW spr round 23 (radius: 25)
[20:08:01 -500477.028635] SLOW spr round 24 (radius: 5)
[20:12:31 -500476.022018] SLOW spr round 25 (radius: 5)
[20:16:26 -500476.021952] SLOW spr round 26 (radius: 10)
[20:20:29 -500476.021951] SLOW spr round 27 (radius: 15)
[20:27:56 -500476.021950] SLOW spr round 28 (radius: 20)
[20:38:39 -500476.021949] SLOW spr round 29 (radius: 25)
[20:50:45 -500476.021949] Model parameter optimization (eps = 0.100000)

[20:50:56] [worker #0] ML tree search #11, logLikelihood: -500475.883614

[20:50:57 -1154065.385021] Initial branch length optimization
[20:51:01 -1030649.667135] Model parameter optimization (eps = 10.000000)
[20:51:46 -1028178.341455] AUTODETECT spr round 1 (radius: 5)
[20:55:03 -858318.380162] AUTODETECT spr round 2 (radius: 10)
[20:58:52 -646474.459101] AUTODETECT spr round 3 (radius: 15)
[21:03:11 -559985.898123] AUTODETECT spr round 4 (radius: 20)
[21:08:01 -541359.432580] AUTODETECT spr round 5 (radius: 25)
[21:13:03 -537889.626296] SPR radius for FAST iterations: 25 (autodetect)
[21:13:03 -537889.626296] Model parameter optimization (eps = 3.000000)
[21:13:39 -537601.610787] FAST spr round 1 (radius: 25)
[21:14:19] [worker #1] ML tree search #14, logLikelihood: -500480.909474
[21:20:11 -503316.902974] FAST spr round 2 (radius: 25)
[21:25:06 -501178.176076] FAST spr round 3 (radius: 25)
[21:29:13 -500743.747997] FAST spr round 4 (radius: 25)
[21:32:42 -500714.518965] FAST spr round 5 (radius: 25)
[21:35:50 -500702.109951] FAST spr round 6 (radius: 25)
[21:38:48 -500695.180191] FAST spr round 7 (radius: 25)
[21:41:38 -500695.180172] Model parameter optimization (eps = 1.000000)
[21:41:56 -500688.666426] SLOW spr round 1 (radius: 5)
[21:46:10 -500565.192257] SLOW spr round 2 (radius: 5)
[21:49:58 -500558.049599] SLOW spr round 3 (radius: 5)
[21:53:36 -500555.526389] SLOW spr round 4 (radius: 5)
[21:57:15 -500555.526214] SLOW spr round 5 (radius: 10)
[22:01:15 -500535.597113] SLOW spr round 6 (radius: 5)
[22:05:33 -500526.017688] SLOW spr round 7 (radius: 5)
[22:09:23 -500526.017613] SLOW spr round 8 (radius: 10)
[22:13:30 -500521.208316] SLOW spr round 9 (radius: 5)
[22:17:44 -500510.050961] SLOW spr round 10 (radius: 5)
[22:21:34 -500509.017388] SLOW spr round 11 (radius: 5)
[22:25:13 -500509.017369] SLOW spr round 12 (radius: 10)
[22:29:11 -500507.735631] SLOW spr round 13 (radius: 5)
[22:33:27 -500501.295990] SLOW spr round 14 (radius: 5)
[22:37:15 -500501.295975] SLOW spr round 15 (radius: 10)
[22:41:18 -500501.295974] SLOW spr round 16 (radius: 15)
[22:49:11 -500501.295973] SLOW spr round 17 (radius: 20)
[23:00:33 -500501.039426] SLOW spr round 18 (radius: 5)
[23:05:17 -500485.926270] SLOW spr round 19 (radius: 5)
[23:09:17 -500484.044012] SLOW spr round 20 (radius: 5)
[23:13:01 -500482.555914] SLOW spr round 21 (radius: 5)
[23:16:38 -500482.555907] SLOW spr round 22 (radius: 10)
[23:20:32 -500482.555906] SLOW spr round 23 (radius: 15)
[23:28:42 -500482.555905] SLOW spr round 24 (radius: 20)
[23:40:11 -500482.555904] SLOW spr round 25 (radius: 25)
[23:47:03] [worker #1] ML tree search #16, logLikelihood: -500457.532143
[23:53:25 -500482.555904] Model parameter optimization (eps = 0.100000)

[23:53:43] [worker #0] ML tree search #13, logLikelihood: -500481.889425

[23:53:43 -1154627.321180] Initial branch length optimization
[23:53:48 -1032710.437705] Model parameter optimization (eps = 10.000000)
[23:54:29 -1030144.299220] AUTODETECT spr round 1 (radius: 5)
[23:57:55 -862499.056024] AUTODETECT spr round 2 (radius: 10)
[24:01:43 -644235.702206] AUTODETECT spr round 3 (radius: 15)
[24:06:15 -574109.992969] AUTODETECT spr round 4 (radius: 20)
[24:11:10 -550618.566142] AUTODETECT spr round 5 (radius: 25)
[24:16:43 -545495.203159] SPR radius for FAST iterations: 25 (autodetect)
[24:16:43 -545495.203159] Model parameter optimization (eps = 3.000000)
[24:17:15 -545167.419533] FAST spr round 1 (radius: 25)
[24:23:29 -507770.220381] FAST spr round 2 (radius: 25)
[24:28:08 -503166.402430] FAST spr round 3 (radius: 25)
[24:32:05 -501020.808687] FAST spr round 4 (radius: 25)
[24:35:45 -500896.879915] FAST spr round 5 (radius: 25)
[24:39:04 -500850.415275] FAST spr round 6 (radius: 25)
[24:42:11 -500822.141983] FAST spr round 7 (radius: 25)
[24:45:01 -500819.948671] FAST spr round 8 (radius: 25)
[24:47:47 -500819.948597] Model parameter optimization (eps = 1.000000)
[24:48:12 -500788.797767] SLOW spr round 1 (radius: 5)
[24:52:21 -500622.580363] SLOW spr round 2 (radius: 5)
[24:56:14 -500585.134959] SLOW spr round 3 (radius: 5)
[24:59:54 -500582.981117] SLOW spr round 4 (radius: 5)
[25:03:30 -500582.981081] SLOW spr round 5 (radius: 10)
[25:07:32 -500568.659607] SLOW spr round 6 (radius: 5)
[25:11:49 -500566.433578] SLOW spr round 7 (radius: 5)
[25:15:43 -500563.880048] SLOW spr round 8 (radius: 5)
[25:19:23 -500563.879487] SLOW spr round 9 (radius: 10)
[25:23:27 -500558.752174] SLOW spr round 10 (radius: 5)
[25:27:45 -500548.474437] SLOW spr round 11 (radius: 5)
[25:31:19 -500543.001268] SLOW spr round 12 (radius: 5)
[25:34:59 -500535.947544] SLOW spr round 13 (radius: 5)
[25:38:34 -500535.947480] SLOW spr round 14 (radius: 10)
[25:42:14 -500534.306432] SLOW spr round 15 (radius: 5)
[25:46:09 -500534.304850] SLOW spr round 16 (radius: 10)
[25:50:21 -500534.304815] SLOW spr round 17 (radius: 15)
[25:57:34 -500534.304814] SLOW spr round 18 (radius: 20)
[26:08:16 -500529.459826] SLOW spr round 19 (radius: 5)
[26:12:51 -500519.140128] SLOW spr round 20 (radius: 5)
[26:16:35 -500517.745506] SLOW spr round 21 (radius: 5)
[26:20:01 -500517.745242] SLOW spr round 22 (radius: 10)
[26:23:59 -500516.925785] SLOW spr round 23 (radius: 5)
[26:27:53 -500513.772940] SLOW spr round 24 (radius: 5)
[26:31:26 -500513.772855] SLOW spr round 25 (radius: 10)
[26:35:15 -500513.772853] SLOW spr round 26 (radius: 15)
[26:42:41 -500513.772852] SLOW spr round 27 (radius: 20)
[26:53:23 -500513.772851] SLOW spr round 28 (radius: 25)
[27:06:08 -500513.772850] Model parameter optimization (eps = 0.100000)

[27:06:26] [worker #0] ML tree search #15, logLikelihood: -500512.658670

[27:06:27 -1154908.221512] Initial branch length optimization
[27:06:31 -1031469.569088] Model parameter optimization (eps = 10.000000)
[27:07:16 -1029071.285759] AUTODETECT spr round 1 (radius: 5)
[27:08:08] [worker #1] ML tree search #18, logLikelihood: -500513.757259
[27:10:34 -855531.115869] AUTODETECT spr round 2 (radius: 10)
[27:14:27 -669383.008789] AUTODETECT spr round 3 (radius: 15)
[27:18:39 -578991.733159] AUTODETECT spr round 4 (radius: 20)
[27:22:57 -558238.559596] AUTODETECT spr round 5 (radius: 25)
[27:27:44 -553481.841046] SPR radius for FAST iterations: 25 (autodetect)
[27:27:44 -553481.841046] Model parameter optimization (eps = 3.000000)
[27:28:15 -553263.840547] FAST spr round 1 (radius: 25)
[27:34:24 -506694.780067] FAST spr round 2 (radius: 25)
[27:39:09 -503055.974509] FAST spr round 3 (radius: 25)
[27:43:02 -502501.483814] FAST spr round 4 (radius: 25)
[27:46:27 -502445.057428] FAST spr round 5 (radius: 25)
[27:49:27 -502445.057061] Model parameter optimization (eps = 1.000000)
[27:49:48 -502413.686787] SLOW spr round 1 (radius: 5)
[27:53:58 -502238.476404] SLOW spr round 2 (radius: 5)
[27:57:36 -502187.937098] SLOW spr round 3 (radius: 5)
[28:00:56 -502187.316703] SLOW spr round 4 (radius: 5)
[28:04:16 -502187.316685] SLOW spr round 5 (radius: 10)
[28:07:55 -502176.261203] SLOW spr round 6 (radius: 5)
[28:11:47 -502176.183187] SLOW spr round 7 (radius: 10)
[28:15:52 -502176.183105] SLOW spr round 8 (radius: 15)
[28:22:51 -502176.183104] SLOW spr round 9 (radius: 20)
[28:32:59 -502175.442682] SLOW spr round 10 (radius: 5)
[28:37:24 -502170.075657] SLOW spr round 11 (radius: 5)
[28:41:01 -502170.075645] SLOW spr round 12 (radius: 10)
[28:44:51 -502169.397631] SLOW spr round 13 (radius: 5)
[28:48:39 -502169.397568] SLOW spr round 14 (radius: 10)
[28:52:49 -502169.397567] SLOW spr round 15 (radius: 15)
[28:57:08] [worker #1] ML tree search #20, logLikelihood: -500566.370766
[28:59:51 -502169.397566] SLOW spr round 16 (radius: 20)
[29:10:13 -502091.201840] SLOW spr round 17 (radius: 5)
[29:15:03 -500689.273091] SLOW spr round 18 (radius: 5)
[29:19:13 -500605.281651] SLOW spr round 19 (radius: 5)
[29:22:56 -500597.752893] SLOW spr round 20 (radius: 5)
[29:26:32 -500597.251338] SLOW spr round 21 (radius: 5)
[29:30:05 -500597.251337] SLOW spr round 22 (radius: 10)
[29:33:58 -500597.251336] SLOW spr round 23 (radius: 15)
[29:41:59 -500597.251335] SLOW spr round 24 (radius: 20)
[29:52:59 -500597.251335] SLOW spr round 25 (radius: 25)
[30:06:02 -500597.251334] Model parameter optimization (eps = 0.100000)

[30:06:14] [worker #0] ML tree search #17, logLikelihood: -500597.118720

[30:06:14 -1159996.832803] Initial branch length optimization
[30:06:18 -1033787.362526] Model parameter optimization (eps = 10.000000)
[30:07:00 -1031266.876073] AUTODETECT spr round 1 (radius: 5)
[30:10:26 -863986.085704] AUTODETECT spr round 2 (radius: 10)
[30:14:19 -655631.458770] AUTODETECT spr round 3 (radius: 15)
[30:18:37 -559717.342426] AUTODETECT spr round 4 (radius: 20)
[30:23:11 -540923.935483] AUTODETECT spr round 5 (radius: 25)
[30:28:44 -536427.247335] SPR radius for FAST iterations: 25 (autodetect)
[30:28:44 -536427.247335] Model parameter optimization (eps = 3.000000)
[30:29:16 -536040.657277] FAST spr round 1 (radius: 25)
[30:35:28 -503540.299334] FAST spr round 2 (radius: 25)
[30:40:07 -501015.856033] FAST spr round 3 (radius: 25)
[30:43:53 -500770.756384] FAST spr round 4 (radius: 25)
[30:47:20 -500686.868625] FAST spr round 5 (radius: 25)
[30:50:19 -500676.662967] FAST spr round 6 (radius: 25)
[30:53:06 -500676.662909] Model parameter optimization (eps = 1.000000)
[30:53:23 -500669.719769] SLOW spr round 1 (radius: 5)
[30:57:35 -500581.839891] SLOW spr round 2 (radius: 5)
[31:01:26 -500571.019653] SLOW spr round 3 (radius: 5)
[31:05:00 -500569.954901] SLOW spr round 4 (radius: 5)
[31:08:32 -500569.954657] SLOW spr round 5 (radius: 10)
[31:12:28 -500549.384237] SLOW spr round 6 (radius: 5)
[31:16:57 -500533.195290] SLOW spr round 7 (radius: 5)
[31:20:48 -500529.013990] SLOW spr round 8 (radius: 5)
[31:24:26 -500526.291700] SLOW spr round 9 (radius: 5)
[31:27:59 -500526.291681] SLOW spr round 10 (radius: 10)
[31:31:49 -500524.150762] SLOW spr round 11 (radius: 5)
[31:35:59 -500520.457544] SLOW spr round 12 (radius: 5)
[31:39:46 -500520.457530] SLOW spr round 13 (radius: 10)
[31:43:41 -500520.457529] SLOW spr round 14 (radius: 15)
[31:50:54 -500520.457527] SLOW spr round 15 (radius: 20)
[32:00:47 -500507.734172] SLOW spr round 16 (radius: 5)
[32:04:52 -500507.521797] SLOW spr round 17 (radius: 5)
[32:08:30 -500507.521773] SLOW spr round 18 (radius: 10)
[32:12:12 -500507.521771] SLOW spr round 19 (radius: 15)
[32:19:13 -500507.521769] SLOW spr round 20 (radius: 20)
[32:29:34 -500507.521768] SLOW spr round 21 (radius: 25)
[32:41:25 -500507.521766] Model parameter optimization (eps = 0.100000)

[32:41:33] [worker #0] ML tree search #19, logLikelihood: -500507.470143


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.148768,0.196912) (0.083670,0.382208) (0.408052,0.708912) (0.359510,1.806496) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -500445.261698

AIC score: 1004900.523396 / AICc score: 9048960.523396 / BIC score: 1014577.746569
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=922).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A8MXY4/3_mltree/A8MXY4.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A8MXY4/3_mltree/A8MXY4.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A8MXY4/3_mltree/A8MXY4.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A8MXY4/3_mltree/A8MXY4.raxml.log

Analysis started: 07-Jul-2021 13:55:31 / finished: 08-Jul-2021 22:37:05

Elapsed time: 117693.497 seconds

Consumed energy: 10915.052 Wh (= 55 km in an electric car, or 273 km with an e-scooter!)