RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 17:57:06 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/A8MXD5/2_msa/A8MXD5_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/A8MXD5/3_mltree/A8MXD5.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/A8MXD5/4_raxmlng_ancestral/A8MXD5 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622645826 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/A8MXD5/2_msa/A8MXD5_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 290 sites WARNING: Sequences tr_G3RDD7_G3RDD7_GORGO_9595 and tr_H2R487_H2R487_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RDD7_G3RDD7_GORGO_9595 and tr_A0A2I3LM55_A0A2I3LM55_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RDD7_G3RDD7_GORGO_9595 and tr_A0A2R8ZIK6_A0A2R8ZIK6_PANPA_9597 are exactly identical! WARNING: Sequences tr_B5DLJ2_B5DLJ2_DROPS_46245 and tr_B4GVA4_B4GVA4_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q297Y2_Q297Y2_DROPS_46245 and tr_B4G374_B4G374_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2RCR1_H2RCR1_PANTR_9598 and tr_A0A2R8ZJ10_A0A2R8ZJ10_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0E0FV96_A0A0E0FV96_ORYNI_4536 and tr_A2WWL3_A2WWL3_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0FV96_A0A0E0FV96_ORYNI_4536 and tr_I1NSZ3_I1NSZ3_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0FV96_A0A0E0FV96_ORYNI_4536 and tr_A0A0E0C9S3_A0A0E0C9S3_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0FV96_A0A0E0FV96_ORYNI_4536 and tr_A0A0D3EVT2_A0A0D3EVT2_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0FV96_A0A0E0FV96_ORYNI_4536 and tr_Q941V7_Q941V7_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0GMJ3_A0A0E0GMJ3_ORYNI_4536 and tr_A2XGS8_A2XGS8_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0GMJ3_A0A0E0GMJ3_ORYNI_4536 and tr_I1PBE0_I1PBE0_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0GMJ3_A0A0E0GMJ3_ORYNI_4536 and tr_A0A0E0D0N7_A0A0E0D0N7_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0GMJ3_A0A0E0GMJ3_ORYNI_4536 and tr_A0A0E0NV65_A0A0E0NV65_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GMJ3_A0A0E0GMJ3_ORYNI_4536 and tr_A0A0D3FIL1_A0A0D3FIL1_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GMJ3_A0A0E0GMJ3_ORYNI_4536 and tr_Q10L92_Q10L92_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0GR24_A0A0E0GR24_ORYNI_4536 and tr_A0A0E0NYW8_A0A0E0NYW8_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GR24_A0A0E0GR24_ORYNI_4536 and tr_A0A0D9ZB40_A0A0D9ZB40_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0H0H5_A0A0E0H0H5_ORYNI_4536 and tr_A2XT77_A2XT77_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0H0H5_A0A0E0H0H5_ORYNI_4536 and tr_I1PL23_I1PL23_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0H0H5_A0A0E0H0H5_ORYNI_4536 and tr_A0A0E0P8W8_A0A0E0P8W8_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0H0H5_A0A0E0H0H5_ORYNI_4536 and tr_Q7XVH0_Q7XVH0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0H6E3_A0A0E0H6E3_ORYNI_4536 and tr_A2XY45_A2XY45_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0H6E3_A0A0E0H6E3_ORYNI_4536 and tr_Q7X6B6_Q7X6B6_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0HL79_A0A0E0HL79_ORYNI_4536 and tr_A2X9M2_A2X9M2_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0HL79_A0A0E0HL79_ORYNI_4536 and tr_I1P4A0_I1P4A0_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0HL79_A0A0E0HL79_ORYNI_4536 and tr_A0A0E0CRI2_A0A0E0CRI2_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0HL79_A0A0E0HL79_ORYNI_4536 and tr_A0A0E0NKZ4_A0A0E0NKZ4_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0HL79_A0A0E0HL79_ORYNI_4536 and tr_A0A0D3FAH4_A0A0D3FAH4_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0HL79_A0A0E0HL79_ORYNI_4536 and tr_A0A0D9YY83_A0A0D9YY83_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0HL79_A0A0E0HL79_ORYNI_4536 and tr_Q6YUW0_Q6YUW0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F6U270_F6U270_MACMU_9544 and tr_G7P5H8_G7P5H8_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6U270_F6U270_MACMU_9544 and tr_A0A096MTR0_A0A096MTR0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6U270_F6U270_MACMU_9544 and tr_A0A0D9RX12_A0A0D9RX12_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6U270_F6U270_MACMU_9544 and tr_A0A2K6ALU2_A0A2K6ALU2_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6U270_F6U270_MACMU_9544 and tr_A0A2K6A3L9_A0A2K6A3L9_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6VK68_F6VK68_MACMU_9544 and tr_G7P8K3_G7P8K3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6VK68_F6VK68_MACMU_9544 and tr_A0A2K6DDK1_A0A2K6DDK1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A2Y3L0_A2Y3L0_ORYSI_39946 and tr_I1PUQ9_I1PUQ9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2Y3L0_A2Y3L0_ORYSI_39946 and tr_A0A0D3G6H0_A0A0D3G6H0_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_B8B5J5_B8B5J5_ORYSI_39946 and tr_Q8H5B5_Q8H5B5_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_I1PQ69_I1PQ69_ORYGL_4538 and tr_A0A0D3G0S7_A0A0D3G0S7_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1PWJ3_I1PWJ3_ORYGL_4538 and tr_A0A0E0PNT1_A0A0E0PNT1_ORYRU_4529 are exactly identical! WARNING: Sequences tr_I1PWJ3_I1PWJ3_ORYGL_4538 and tr_A0A0E0A0I1_A0A0E0A0I1_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_I1PWJ3_I1PWJ3_ORYGL_4538 and tr_Q6ATX0_Q6ATX0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_M4C7P7_M4C7P7_BRARP_51351 and tr_A0A078HF41_A0A078HF41_BRANA_3708 are exactly identical! WARNING: Sequences tr_A0A3B5YTA5_A0A3B5YTA5_WHEAT_4565 and tr_A0A3B5ZRT6_A0A3B5ZRT6_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A078FPH1_A0A078FPH1_BRANA_3708 and tr_A0A0D3C5L7_A0A0D3C5L7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078G0N3_A0A078G0N3_BRANA_3708 and tr_A0A0D3BQA7_A0A0D3BQA7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078J7T7_A0A078J7T7_BRANA_3708 and tr_A0A0D3AL77_A0A0D3AL77_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078JCL9_A0A078JCL9_BRANA_3708 and tr_A0A0D3E488_A0A0D3E488_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078JQQ5_A0A078JQQ5_BRANA_3708 and tr_A0A0D3EFP5_A0A0D3EFP5_BRAOL_109376 are exactly identical! WARNING: Sequences tr_V4SHR2_V4SHR2_9ROSI_85681 and tr_A0A2H5NC86_A0A2H5NC86_CITUN_55188 are exactly identical! WARNING: Sequences tr_V4SML7_V4SML7_9ROSI_85681 and tr_A0A2H5NLE1_A0A2H5NLE1_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0D2QTQ9_A0A0D2QTQ9_GOSRA_29730 and tr_A0A1U8LGD7_A0A1U8LGD7_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2VUD1_A0A0D2VUD1_GOSRA_29730 and tr_A0A1U8MFM8_A0A1U8MFM8_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2VUD1_A0A0D2VUD1_GOSRA_29730 and tr_A0A1U8MR63_A0A1U8MR63_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0L9VC43_A0A0L9VC43_PHAAN_3914 and tr_A0A1S3T794_A0A1S3T794_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A1S3XI72_A0A1S3XI72_TOBAC_4097 and tr_A0A1U7WB19_A0A1U7WB19_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3Y0T8_A0A1S3Y0T8_TOBAC_4097 and tr_A0A1U7WT78_A0A1U7WT78_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YWQ8_A0A1S3YWQ8_TOBAC_4097 and tr_A0A1U7V8H9_A0A1U7V8H9_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZF09_A0A1S3ZF09_TOBAC_4097 and tr_A0A1U7WMP3_A0A1U7WMP3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZGU9_A0A1S3ZGU9_TOBAC_4097 and tr_A0A314KLN2_A0A314KLN2_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3ZGU9_A0A1S3ZGU9_TOBAC_4097 and tr_A0A1U7VS55_A0A1U7VS55_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4ASY2_A0A1S4ASY2_TOBAC_4097 and tr_A0A1U7Y9M0_A0A1U7Y9M0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AWB1_A0A1S4AWB1_TOBAC_4097 and tr_A0A1U7VF45_A0A1U7VF45_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4BQV8_A0A1S4BQV8_TOBAC_4097 and tr_A0A1U7XUB4_A0A1U7XUB4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4D6U7_A0A1S4D6U7_TOBAC_4097 and tr_A0A1U7XF33_A0A1U7XF33_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4DG18_A0A1S4DG18_TOBAC_4097 and tr_A0A1U7V9U0_A0A1U7V9U0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A226N7V4_A0A226N7V4_CALSU_9009 and tr_A0A226PVX9_A0A226PVX9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2G2YPF5_A0A2G2YPF5_CAPAN_4072 and tr_A0A2G3BII4_A0A2G3BII4_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2U1KHT6_A0A2U1KHT6_ARTAN_35608 and tr_A0A2U1PWC8_A0A2U1PWC8_ARTAN_35608 are exactly identical! WARNING: Duplicate sequences found: 73 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/A8MXD5/4_raxmlng_ancestral/A8MXD5.raxml.reduced.phy Alignment comprises 1 partitions and 290 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 290 Gaps: 33.49 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/A8MXD5/4_raxmlng_ancestral/A8MXD5.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/A8MXD5/3_mltree/A8MXD5.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 73 / 5840 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -112528.069404 [00:00:00 -112528.069404] Initial branch length optimization [00:00:00 -106477.348816] Model parameter optimization (eps = 0.100000) [00:00:24] Tree #1, final logLikelihood: -106356.452401 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.124497,0.215540) (0.127335,0.340594) (0.361742,0.780287) (0.386426,1.675698) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/A8MXD5/4_raxmlng_ancestral/A8MXD5.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/A8MXD5/4_raxmlng_ancestral/A8MXD5.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/A8MXD5/4_raxmlng_ancestral/A8MXD5.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/A8MXD5/4_raxmlng_ancestral/A8MXD5.raxml.log Analysis started: 02-Jun-2021 17:57:06 / finished: 02-Jun-2021 17:57:34 Elapsed time: 27.631 seconds Consumed energy: 2.293 Wh