RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 16-Jul-2021 00:29:48 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A8MT65/2_msa/A8MT65_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A8MT65/3_mltree/A8MT65 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A8MT65/2_msa/A8MT65_trimmed_msa.fasta [00:00:00] Loaded alignment with 999 taxa and 35 sites WARNING: Sequences sp_Q571J5_Z354C_MOUSE_10090 and sp_Q9EPU7_Z354C_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XNQ0_M3XNQ0_MUSPF_9669 and tr_G1LR04_G1LR04_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XNQ0_M3XNQ0_MUSPF_9669 and tr_A0A337S222_A0A337S222_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XNQ0_M3XNQ0_MUSPF_9669 and tr_A0A2U3ZT79_A0A2U3ZT79_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XNQ0_M3XNQ0_MUSPF_9669 and tr_A0A2U3YT59_A0A2U3YT59_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XUD9_M3XUD9_MUSPF_9669 and tr_A0A2Y9IGT6_A0A2Y9IGT6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y271_M3Y271_MUSPF_9669 and tr_J9P173_J9P173_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y271_M3Y271_MUSPF_9669 and tr_F6UPT7_F6UPT7_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Y271_M3Y271_MUSPF_9669 and tr_A0A287BEG0_A0A287BEG0_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y271_M3Y271_MUSPF_9669 and tr_G1M2F8_G1M2F8_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y271_M3Y271_MUSPF_9669 and tr_A0A2U4BTY7_A0A2U4BTY7_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3Y271_M3Y271_MUSPF_9669 and tr_A0A2U3XJ07_A0A2U3XJ07_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y271_M3Y271_MUSPF_9669 and tr_A0A2Y9P7Z3_A0A2Y9P7Z3_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Y271_M3Y271_MUSPF_9669 and tr_A0A2Y9F9F1_A0A2Y9F9F1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Y2K7_M3Y2K7_MUSPF_9669 and tr_J9JHG8_J9JHG8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y2K7_M3Y2K7_MUSPF_9669 and tr_A0A2I2UU23_A0A2I2UU23_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y2K7_M3Y2K7_MUSPF_9669 and tr_A0A2U3XJ03_A0A2U3XJ03_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y4Y9_M3Y4Y9_MUSPF_9669 and tr_A0A2Y9KZJ6_A0A2Y9KZJ6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y5H7_M3Y5H7_MUSPF_9669 and tr_H2P0B3_H2P0B3_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3Y5J9_M3Y5J9_MUSPF_9669 and tr_A0A2I2U3L0_A0A2I2U3L0_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y5J9_M3Y5J9_MUSPF_9669 and tr_A0A2U3YSD4_A0A2U3YSD4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YQL3_M3YQL3_MUSPF_9669 and tr_G1LCW4_G1LCW4_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YST9_M3YST9_MUSPF_9669 and tr_G1RMR7_G1RMR7_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YST9_M3YST9_MUSPF_9669 and tr_E2RLX6_E2RLX6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YST9_M3YST9_MUSPF_9669 and tr_A0A2J8LWW1_A0A2J8LWW1_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YST9_M3YST9_MUSPF_9669 and sp_Q32M78_ZN699_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YST9_M3YST9_MUSPF_9669 and tr_G1L305_G1L305_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YST9_M3YST9_MUSPF_9669 and tr_A0A337SM30_A0A337SM30_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YST9_M3YST9_MUSPF_9669 and tr_A0A2R9B884_A0A2R9B884_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YST9_M3YST9_MUSPF_9669 and tr_A0A384D9J8_A0A384D9J8_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_G1P9M2_G1P9M2_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_J9NZD8_J9NZD8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_F6UAE9_F6UAE9_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_W5PCH7_W5PCH7_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_I3LY64_I3LY64_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_G5BHZ0_G5BHZ0_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A287AY13_A0A287AY13_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_G1LSL0_G1LSL0_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_E1BMZ4_E1BMZ4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2I2UHS2_A0A2I2UHS2_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A1S3A3L2_A0A1S3A3L2_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A1S3GP01_A0A1S3GP01_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A1U7U3Z7_A0A1U7U3Z7_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A1U7QU85_A0A1U7QU85_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2U3V237_A0A2U3V237_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2U3VJB5_A0A2U3VJB5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2U3Y1N2_A0A2U3Y1N2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2Y9DM21_A0A2Y9DM21_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2Y9KFZ4_A0A2Y9KFZ4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2Y9LKY1_A0A2Y9LKY1_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A384CDE3_A0A384CDE3_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A383ZJ36_A0A383ZJ36_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Z2C9_M3Z2C9_MUSPF_9669 and tr_G1MB24_G1MB24_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z2C9_M3Z2C9_MUSPF_9669 and tr_A0A2Y9L4J4_A0A2Y9L4J4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z2C9_M3Z2C9_MUSPF_9669 and tr_A0A384BXA5_A0A384BXA5_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z2D1_M3Z2D1_MUSPF_9669 and tr_J9P6X9_J9P6X9_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z2D1_M3Z2D1_MUSPF_9669 and tr_A0A2I2UDD1_A0A2I2UDD1_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2I3GLL3_A0A2I3GLL3_NOMLE_61853 and tr_A0A2K6A6P2_A0A2K6A6P2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GMZ4_A0A2I3GMZ4_NOMLE_61853 and tr_G3RHS0_G3RHS0_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GWK7_A0A2I3GWK7_NOMLE_61853 and tr_A0A2I2Y2H9_A0A2I2Y2H9_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GWK7_A0A2I3GWK7_NOMLE_61853 and tr_A0A2J8S1I3_A0A2J8S1I3_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GWK7_A0A2I3GWK7_NOMLE_61853 and tr_A0A2I3STQ8_A0A2I3STQ8_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GWK7_A0A2I3GWK7_NOMLE_61853 and sp_Q9BUY5_ZN426_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GWK7_A0A2I3GWK7_NOMLE_61853 and tr_A0A2R8ZUA2_A0A2R8ZUA2_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3GYV9_A0A2I3GYV9_NOMLE_61853 and tr_A0A2I3RX11_A0A2I3RX11_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GYV9_A0A2I3GYV9_NOMLE_61853 and tr_F6Y842_F6Y842_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A2I3GYV9_A0A2I3GYV9_NOMLE_61853 and sp_Q9HBT8_Z286A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GYV9_A0A2I3GYV9_NOMLE_61853 and tr_F7C0L6_F7C0L6_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GYV9_A0A2I3GYV9_NOMLE_61853 and tr_G5BQZ6_G5BQZ6_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A2I3GYV9_A0A2I3GYV9_NOMLE_61853 and tr_G7PTR0_G7PTR0_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3GYV9_A0A2I3GYV9_NOMLE_61853 and tr_A0A096P2Z7_A0A096P2Z7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GYV9_A0A2I3GYV9_NOMLE_61853 and tr_A0A2K5M2U5_A0A2K5M2U5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GYV9_A0A2I3GYV9_NOMLE_61853 and tr_A0A2K6E3Y5_A0A2K6E3Y5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3GYV9_A0A2I3GYV9_NOMLE_61853 and tr_A0A2K5ZSE2_A0A2K5ZSE2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GYV9_A0A2I3GYV9_NOMLE_61853 and tr_A0A2Y9QTX4_A0A2Y9QTX4_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2I3GZ01_A0A2I3GZ01_NOMLE_61853 and tr_G3SAJ5_G3SAJ5_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GZ01_A0A2I3GZ01_NOMLE_61853 and tr_H2NXG5_H2NXG5_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GZ01_A0A2I3GZ01_NOMLE_61853 and tr_K7DBH8_K7DBH8_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GZ01_A0A2I3GZ01_NOMLE_61853 and tr_G7PZ50_G7PZ50_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3GZ01_A0A2I3GZ01_NOMLE_61853 and tr_A0A1U7T8Q6_A0A1U7T8Q6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A2I3GZ01_A0A2I3GZ01_NOMLE_61853 and tr_A0A2K5LKE6_A0A2K5LKE6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GZ01_A0A2I3GZ01_NOMLE_61853 and tr_A0A2R9B553_A0A2R9B553_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HE27_A0A2I3HE27_NOMLE_61853 and tr_A0A2I2ZNI4_A0A2I2ZNI4_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HE27_A0A2I3HE27_NOMLE_61853 and tr_H2NJ87_H2NJ87_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HE27_A0A2I3HE27_NOMLE_61853 and tr_A0A2I3TN33_A0A2I3TN33_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HE27_A0A2I3HE27_NOMLE_61853 and sp_P21506_ZNF10_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HE27_A0A2I3HE27_NOMLE_61853 and tr_A0A2R8NDG3_A0A2R8NDG3_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3HE27_A0A2I3HE27_NOMLE_61853 and tr_G7PJI8_G7PJI8_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3HE27_A0A2I3HE27_NOMLE_61853 and tr_A0A2I3MVR8_A0A2I3MVR8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HE27_A0A2I3HE27_NOMLE_61853 and tr_A0A2K5KN66_A0A2K5KN66_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HE27_A0A2I3HE27_NOMLE_61853 and tr_A0A2K6CK19_A0A2K6CK19_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HE27_A0A2I3HE27_NOMLE_61853 and tr_A0A2K5ZIS7_A0A2K5ZIS7_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3HE27_A0A2I3HE27_NOMLE_61853 and tr_A0A2R9AAF9_A0A2R9AAF9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HNU6_A0A2I3HNU6_NOMLE_61853 and tr_G3SR68_G3SR68_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and tr_A0A2I2ZQL8_A0A2I2ZQL8_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and tr_H2P0B2_H2P0B2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and tr_A0A2J8JLI9_A0A2J8JLI9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and tr_F7DGC0_F7DGC0_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and sp_Q6ECI4_ZN470_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and tr_A0A1D5RCK4_A0A1D5RCK4_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and tr_G7PZ23_G7PZ23_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and tr_A0A1U7U6P2_A0A1U7U6P2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and tr_A0A2K5NQC3_A0A2K5NQC3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and tr_A0A2K6D1Z1_A0A2K6D1Z1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and tr_A0A2K5YYZ6_A0A2K5YYZ6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3HT92_A0A2I3HT92_NOMLE_61853 and tr_A0A2R9C2R2_A0A2R9C2R2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QL58_G1QL58_NOMLE_61853 and tr_G7MUI1_G7MUI1_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QL58_G1QL58_NOMLE_61853 and tr_F7IG11_F7IG11_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QL58_G1QL58_NOMLE_61853 and tr_G7P723_G7P723_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QL58_G1QL58_NOMLE_61853 and tr_A0A096MXI4_A0A096MXI4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QL58_G1QL58_NOMLE_61853 and tr_A0A2K5LSM1_A0A2K5LSM1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QL58_G1QL58_NOMLE_61853 and tr_A0A2K6AN26_A0A2K6AN26_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QL58_G1QL58_NOMLE_61853 and tr_A0A2K5ZUI9_A0A2K5ZUI9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QL70_G1QL70_NOMLE_61853 and tr_G3S2S2_G3S2S2_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QL70_G1QL70_NOMLE_61853 and tr_K7EVS2_K7EVS2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QL70_G1QL70_NOMLE_61853 and tr_H2REH7_H2REH7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QL70_G1QL70_NOMLE_61853 and sp_B4DU55_ZN879_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QL70_G1QL70_NOMLE_61853 and tr_A0A2R9ACJ3_A0A2R9ACJ3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QWQ2_G1QWQ2_NOMLE_61853 and tr_G3S228_G3S228_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QWQ2_G1QWQ2_NOMLE_61853 and tr_A0A2J8SK65_A0A2J8SK65_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QWQ2_G1QWQ2_NOMLE_61853 and tr_A0A2I3T1I2_A0A2I3T1I2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QWQ2_G1QWQ2_NOMLE_61853 and sp_Q99676_ZN184_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QWQ2_G1QWQ2_NOMLE_61853 and tr_F7C6K6_F7C6K6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QWQ2_G1QWQ2_NOMLE_61853 and tr_A0A2R8PJ98_A0A2R8PJ98_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QWQ2_G1QWQ2_NOMLE_61853 and tr_G7P2Q1_G7P2Q1_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QWQ2_G1QWQ2_NOMLE_61853 and tr_A0A2I3LH46_A0A2I3LH46_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QWQ2_G1QWQ2_NOMLE_61853 and tr_A0A2K6EBM5_A0A2K6EBM5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QWQ2_G1QWQ2_NOMLE_61853 and tr_A0A2K5XY05_A0A2K5XY05_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QWQ2_G1QWQ2_NOMLE_61853 and tr_A0A2R9C8X5_A0A2R9C8X5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_G3QU29_G3QU29_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_H2NXU3_H2NXU3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_H2RBZ2_H2RBZ2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and sp_Q96JL9_ZN333_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A1D5QJK0_A0A1D5QJK0_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A2R8P2E9_A0A2R8P2E9_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_G7PZM3_G7PZM3_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A2I3LSU0_A0A2I3LSU0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A0D9R1Q8_A0A0D9R1Q8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A2K5MX30_A0A2K5MX30_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A2K6ECX8_A0A2K6ECX8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A2K5YJ92_A0A2K5YJ92_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A2R9A263_A0A2R9A263_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_F7GDG2_F7GDG2_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_U3DKP1_U3DKP1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_A0A096MVU8_A0A096MVU8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_A0A0D9S896_A0A0D9S896_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_A0A2K5LPR7_A0A2K5LPR7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_A0A2K6BKJ1_A0A2K6BKJ1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_A0A2K5YGK7_A0A2K5YGK7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RHK4_G1RHK4_NOMLE_61853 and tr_H2PH41_H2PH41_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RHK4_G1RHK4_NOMLE_61853 and tr_H2QRT6_H2QRT6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RHK4_G1RHK4_NOMLE_61853 and sp_Q96RE9_ZN300_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RHK4_G1RHK4_NOMLE_61853 and tr_A0A2R9AP07_A0A2R9AP07_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RIT1_G1RIT1_NOMLE_61853 and tr_G3QLV8_G3QLV8_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RIT1_G1RIT1_NOMLE_61853 and tr_H2P0A6_H2P0A6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RIT1_G1RIT1_NOMLE_61853 and tr_A0A2J8JLK3_A0A2J8JLK3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RIT1_G1RIT1_NOMLE_61853 and sp_Q96NG8_ZN582_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RIT1_G1RIT1_NOMLE_61853 and tr_F6WI38_F6WI38_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RIT1_G1RIT1_NOMLE_61853 and tr_A0A2R9A954_A0A2R9A954_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RIU9_G1RIU9_NOMLE_61853 and tr_G3RFV8_G3RFV8_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RIU9_G1RIU9_NOMLE_61853 and tr_A0A2J8JLI6_A0A2J8JLI6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RIU9_G1RIU9_NOMLE_61853 and sp_Q96ND8_ZN583_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RIU9_G1RIU9_NOMLE_61853 and tr_F7DJ47_F7DJ47_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RIU9_G1RIU9_NOMLE_61853 and tr_G7PZ19_G7PZ19_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RIU9_G1RIU9_NOMLE_61853 and tr_A0A0A0MX45_A0A0A0MX45_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RIU9_G1RIU9_NOMLE_61853 and tr_A0A0D9S668_A0A0D9S668_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RIU9_G1RIU9_NOMLE_61853 and tr_A0A2K5LZU4_A0A2K5LZU4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RIU9_G1RIU9_NOMLE_61853 and tr_A0A2K6BPR5_A0A2K6BPR5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RIU9_G1RIU9_NOMLE_61853 and tr_A0A2K5XF38_A0A2K5XF38_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RJ38_G1RJ38_NOMLE_61853 and tr_G3S808_G3S808_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RJ38_G1RJ38_NOMLE_61853 and tr_H2R5T9_H2R5T9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RJ38_G1RJ38_NOMLE_61853 and tr_A0A2K5LXQ2_A0A2K5LXQ2_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RJ38_G1RJ38_NOMLE_61853 and tr_A0A2R9BEQ1_A0A2R9BEQ1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RJ56_G1RJ56_NOMLE_61853 and tr_H2PRI5_H2PRI5_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RJ56_G1RJ56_NOMLE_61853 and tr_F6XBT3_F6XBT3_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RJ56_G1RJ56_NOMLE_61853 and tr_A0A096NA69_A0A096NA69_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RJ56_G1RJ56_NOMLE_61853 and tr_A0A2K6BMJ6_A0A2K6BMJ6_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and tr_G3SCV4_G3SCV4_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and tr_H2P0F4_H2P0F4_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and tr_H2R5T2_H2R5T2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and sp_Q8WXB4_ZN606_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and tr_F6QL28_F6QL28_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and tr_G1LLA8_G1LLA8_AILME_9646 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and tr_G7PZB1_G7PZB1_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and tr_A0A0A0MV87_A0A0A0MV87_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and tr_A0A1U7UM09_A0A1U7UM09_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and tr_A0A2K5LBT8_A0A2K5LBT8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and tr_A0A2K6CMN0_A0A2K6CMN0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RJK9_G1RJK9_NOMLE_61853 and tr_A0A2R9B9N8_A0A2R9B9N8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RMS8_G1RMS8_NOMLE_61853 and tr_G3R6B0_G3R6B0_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RMS8_G1RMS8_NOMLE_61853 and tr_A0A2J8S1G2_A0A2J8S1G2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RMS8_G1RMS8_NOMLE_61853 and tr_H2QF98_H2QF98_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RMS8_G1RMS8_NOMLE_61853 and sp_Q13360_ZN177_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RMS8_G1RMS8_NOMLE_61853 and tr_F7A7M4_F7A7M4_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RMS8_G1RMS8_NOMLE_61853 and tr_G7PZ49_G7PZ49_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RMS8_G1RMS8_NOMLE_61853 and tr_A0A0A0MUB1_A0A0A0MUB1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RMS8_G1RMS8_NOMLE_61853 and tr_A0A2K5KVX6_A0A2K5KVX6_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RMS8_G1RMS8_NOMLE_61853 and tr_A0A2K6DUY9_A0A2K6DUY9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RMS8_G1RMS8_NOMLE_61853 and tr_A0A2K5XT92_A0A2K5XT92_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RV17_G1RV17_NOMLE_61853 and tr_G3QV90_G3QV90_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RV17_G1RV17_NOMLE_61853 and tr_A0A2I3S2Q9_A0A2I3S2Q9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RV17_G1RV17_NOMLE_61853 and sp_A8MTY0_ZN724_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RV17_G1RV17_NOMLE_61853 and tr_A0A2K6BLQ9_A0A2K6BLQ9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RX91_G1RX91_NOMLE_61853 and tr_G1P618_G1P618_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1RX91_G1RX91_NOMLE_61853 and tr_G3S6A0_G3S6A0_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RX91_G1RX91_NOMLE_61853 and tr_H2NSV6_H2NSV6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RX91_G1RX91_NOMLE_61853 and tr_H2QCC1_H2QCC1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RX91_G1RX91_NOMLE_61853 and tr_F6X718_F6X718_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1RX91_G1RX91_NOMLE_61853 and sp_Q9P2J8_ZN624_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RX91_G1RX91_NOMLE_61853 and tr_A0A2Y9R017_A0A2Y9R017_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1S547_G1S547_NOMLE_61853 and tr_A0A2I2YYI0_A0A2I2YYI0_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S547_G1S547_NOMLE_61853 and tr_K7EU23_K7EU23_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S547_G1S547_NOMLE_61853 and tr_H2QG67_H2QG67_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S547_G1S547_NOMLE_61853 and sp_Q8TAQ5_ZN420_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S547_G1S547_NOMLE_61853 and tr_G7PXE1_G7PXE1_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1PJN5_G1PJN5_MYOLU_59463 and tr_G1LNC8_G1LNC8_AILME_9646 are exactly identical! WARNING: Sequences tr_G1PJN5_G1PJN5_MYOLU_59463 and tr_L5KQL1_L5KQL1_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1PJN5_G1PJN5_MYOLU_59463 and tr_A0A2U3YA90_A0A2U3YA90_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1PJN5_G1PJN5_MYOLU_59463 and tr_A0A384DA77_A0A384DA77_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I2YDK3_A0A2I2YDK3_GORGO_9595 and tr_A0A2J8R638_A0A2J8R638_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2YDK3_A0A2I2YDK3_GORGO_9595 and tr_F6QVW9_F6QVW9_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2YDK3_A0A2I2YDK3_GORGO_9595 and tr_G7PXE3_G7PXE3_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I2YDK3_A0A2I2YDK3_GORGO_9595 and tr_A0A0A0MUP5_A0A0A0MUP5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2YDK3_A0A2I2YDK3_GORGO_9595 and tr_A0A2K5MYE8_A0A2K5MYE8_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2YDK3_A0A2I2YDK3_GORGO_9595 and tr_A0A2K6CUG7_A0A2K6CUG7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2YDK3_A0A2I2YDK3_GORGO_9595 and tr_A0A2K5ZQH5_A0A2K5ZQH5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2YDK3_A0A2I2YDK3_GORGO_9595 and tr_A0A2R9AFZ1_A0A2R9AFZ1_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2YEB7_A0A2I2YEB7_GORGO_9595 and tr_H2NZ55_H2NZ55_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2YEB7_A0A2I2YEB7_GORGO_9595 and tr_A0A2I3S1M4_A0A2I3S1M4_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YEB7_A0A2I2YEB7_GORGO_9595 and tr_A0A0D9S1J8_A0A0D9S1J8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2YEB7_A0A2I2YEB7_GORGO_9595 and tr_A0A2R9A1Z5_A0A2R9A1Z5_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and tr_H2NYL9_H2NYL9_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and tr_H2QG72_H2QG72_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and sp_Q96NI8_ZN570_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and tr_A0A1D5R3C7_A0A1D5R3C7_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and tr_F7IIM1_F7IIM1_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and tr_G7PXE8_G7PXE8_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and tr_A0A0A0MVY5_A0A0A0MVY5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and tr_A0A1U7T8G3_A0A1U7T8G3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and tr_A0A2K5L6Z1_A0A2K5L6Z1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and tr_A0A2K6DA83_A0A2K6DA83_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and tr_A0A2K5XDE6_A0A2K5XDE6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 and tr_A0A2R9BTS1_A0A2R9BTS1_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2Z5D0_A0A2I2Z5D0_GORGO_9595 and tr_H2P0F6_H2P0F6_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2Z5D0_A0A2I2Z5D0_GORGO_9595 and tr_H2RD27_H2RD27_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Z5D0_A0A2I2Z5D0_GORGO_9595 and tr_F6VIB6_F6VIB6_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2Z5D0_A0A2I2Z5D0_GORGO_9595 and tr_G7PZB3_G7PZB3_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I2Z5D0_A0A2I2Z5D0_GORGO_9595 and tr_A0A2I3MNS1_A0A2I3MNS1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2Z5D0_A0A2I2Z5D0_GORGO_9595 and tr_A0A0D9S6C7_A0A0D9S6C7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2Z5D0_A0A2I2Z5D0_GORGO_9595 and tr_A0A2K5LAJ0_A0A2K5LAJ0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2Z5D0_A0A2I2Z5D0_GORGO_9595 and tr_A0A2K6BZF6_A0A2K6BZF6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2Z5D0_A0A2I2Z5D0_GORGO_9595 and tr_A0A2K5Y6G8_A0A2K5Y6G8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2Z5D0_A0A2I2Z5D0_GORGO_9595 and tr_A0A2R8ZAS0_A0A2R8ZAS0_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2Z5M2_A0A2I2Z5M2_GORGO_9595 and tr_A0A2J8SJ28_A0A2J8SJ28_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2Z5M2_A0A2I2Z5M2_GORGO_9595 and sp_Q5R5Y7_ZN436_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2Z5M2_A0A2I2Z5M2_GORGO_9595 and tr_H2R0W5_H2R0W5_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Z5M2_A0A2I2Z5M2_GORGO_9595 and sp_Q9C0F3_ZN436_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Z5M2_A0A2I2Z5M2_GORGO_9595 and tr_A0A2R9BGK0_A0A2R9BGK0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R6H2_G3R6H2_GORGO_9595 and tr_H2R157_H2R157_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R6H2_G3R6H2_GORGO_9595 and sp_Q147U1_ZN846_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R6H2_G3R6H2_GORGO_9595 and tr_A0A2R9A2P0_A0A2R9A2P0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RNW8_G3RNW8_GORGO_9595 and tr_H2R6H7_H2R6H7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RNW8_G3RNW8_GORGO_9595 and tr_F7FCJ6_F7FCJ6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RNW8_G3RNW8_GORGO_9595 and tr_G7PYD7_G7PYD7_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3RNW8_G3RNW8_GORGO_9595 and tr_A0A2K5P480_A0A2K5P480_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RNW8_G3RNW8_GORGO_9595 and tr_A0A2K5YK05_A0A2K5YK05_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3RNW8_G3RNW8_GORGO_9595 and tr_A0A2R9C2T4_A0A2R9C2T4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RWH0_G3RWH0_GORGO_9595 and sp_Q03923_ZNF85_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RWH0_G3RWH0_GORGO_9595 and tr_F6UR85_F6UR85_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RWH0_G3RWH0_GORGO_9595 and tr_A0A2I3M0J2_A0A2I3M0J2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RWH0_G3RWH0_GORGO_9595 and tr_A0A2K5KZW5_A0A2K5KZW5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RWH0_G3RWH0_GORGO_9595 and tr_A0A2K6B6G6_A0A2K6B6G6_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RWH0_G3RWH0_GORGO_9595 and tr_A0A2K6ADH3_A0A2K6ADH3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3S7T2_G3S7T2_GORGO_9595 and tr_A0A2J8JTW2_A0A2J8JTW2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S7T2_G3S7T2_GORGO_9595 and sp_Q8N9F8_ZN454_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SC30_G3SC30_GORGO_9595 and tr_H2RD10_H2RD10_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SC30_G3SC30_GORGO_9595 and sp_A8MT65_ZN891_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SC30_G3SC30_GORGO_9595 and tr_A0A2R8Z7T5_A0A2R8Z7T5_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8REG2_A0A2J8REG2_PONAB_9601 and tr_F6TAQ7_F6TAQ7_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2J8REG2_A0A2J8REG2_PONAB_9601 and tr_G7PXE6_G7PXE6_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_H2RH32_H2RH32_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_I3NAL6_I3NAL6_ICTTR_43179 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and sp_Q96PQ6_ZN317_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_G7NNB5_G7NNB5_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_F7ISH9_F7ISH9_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_G7PZ41_G7PZ41_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_A0A096NPJ6_A0A096NPJ6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_A0A0D9R5W8_A0A0D9R5W8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_A0A1S3WFX0_A0A1S3WFX0_ERIEU_9365 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_A0A1U7SFV3_A0A1U7SFV3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_A0A2K5MG20_A0A2K5MG20_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_A0A2K6B331_A0A2K6B331_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_A0A2R9B2Z8_A0A2R9B2Z8_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_A0A2Y9RBS4_A0A2Y9RBS4_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H2NXF7_H2NXF7_PONAB_9601 and tr_A0A2Y9LC03_A0A2Y9LC03_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2NYL6_H2NYL6_PONAB_9601 and tr_H2QG71_H2QG71_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2NYL6_H2NYL6_PONAB_9601 and sp_Q8NB42_ZN527_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NYL6_H2NYL6_PONAB_9601 and tr_F7H5I5_F7H5I5_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2NYL6_H2NYL6_PONAB_9601 and tr_A0A2R8PKM6_A0A2R8PKM6_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2NYL6_H2NYL6_PONAB_9601 and tr_G7PXE5_G7PXE5_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2NYL6_H2NYL6_PONAB_9601 and tr_A0A2K5P5A4_A0A2K5P5A4_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2NYL6_H2NYL6_PONAB_9601 and tr_A0A2K6AUB7_A0A2K6AUB7_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2NYL6_H2NYL6_PONAB_9601 and tr_A0A2K5Z761_A0A2K5Z761_MANLE_9568 are exactly identical! WARNING: Sequences tr_H2NYL6_H2NYL6_PONAB_9601 and tr_A0A2R9BAB0_A0A2R9BAB0_PANPA_9597 are exactly identical! WARNING: Sequences tr_J9NX34_J9NX34_CANLF_9615 and tr_F6UYP8_F6UYP8_HORSE_9796 are exactly identical! WARNING: Sequences tr_J9NX34_J9NX34_CANLF_9615 and tr_F1SC26_F1SC26_PIG_9823 are exactly identical! WARNING: Sequences tr_J9NX34_J9NX34_CANLF_9615 and tr_A0A2U4AUJ9_A0A2U4AUJ9_TURTR_9739 are exactly identical! WARNING: Sequences tr_J9NX34_J9NX34_CANLF_9615 and tr_A0A2U3Z0Q3_A0A2U3Z0Q3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_J9NX34_J9NX34_CANLF_9615 and tr_A0A2Y9MTN4_A0A2Y9MTN4_DELLE_9749 are exactly identical! WARNING: Sequences tr_J9NX34_J9NX34_CANLF_9615 and tr_A0A2Y9S2A9_A0A2Y9S2A9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_J9NX34_J9NX34_CANLF_9615 and tr_A0A384DCH9_A0A384DCH9_URSMA_29073 are exactly identical! WARNING: Sequences tr_J9NX34_J9NX34_CANLF_9615 and tr_A0A383ZK41_A0A383ZK41_BALAS_310752 are exactly identical! WARNING: Sequences tr_J9P3R2_J9P3R2_CANLF_9615 and tr_F1RKN0_F1RKN0_PIG_9823 are exactly identical! WARNING: Sequences tr_J9P5Q9_J9P5Q9_CANLF_9615 and tr_A0A1U7TD13_A0A1U7TD13_TARSY_1868482 are exactly identical! WARNING: Sequences tr_J9P7J5_J9P7J5_CANLF_9615 and tr_M3WTG2_M3WTG2_FELCA_9685 are exactly identical! WARNING: Sequences tr_J9P7J5_J9P7J5_CANLF_9615 and tr_A0A2U3X4U7_A0A2U3X4U7_ODORO_9708 are exactly identical! WARNING: Sequences tr_J9P7J5_J9P7J5_CANLF_9615 and tr_A0A2U3XX45_A0A2U3XX45_LEPWE_9713 are exactly identical! WARNING: Sequences tr_J9P9T4_J9P9T4_CANLF_9615 and tr_A0A2I2V3Z5_A0A2I2V3Z5_FELCA_9685 are exactly identical! WARNING: Sequences tr_J9P9T4_J9P9T4_CANLF_9615 and tr_A0A2U3ZCF3_A0A2U3ZCF3_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A2I3SNE8_A0A2I3SNE8_PANTR_9598 and tr_A0A2R9C8V9_A0A2R9C8V9_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QEX7_H2QEX7_PANTR_9598 and tr_A0A2R9AGP0_A0A2R9AGP0_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QH98_H2QH98_PANTR_9598 and tr_A0A2R9B0R2_A0A2R9B0R2_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6YU87_F6YU87_MONDO_13616 and tr_F6YW23_F6YW23_MONDO_13616 are exactly identical! WARNING: Sequences tr_F7B7L9_F7B7L9_MONDO_13616 and tr_G3VWP5_G3VWP5_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7DH93_F7DH93_MONDO_13616 and tr_G3VCS6_G3VCS6_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7DW41_F7DW41_MONDO_13616 and tr_G3WDL0_G3WDL0_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6U9P1_F6U9P1_HORSE_9796 and tr_H0X0R6_H0X0R6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F6U9P1_F6U9P1_HORSE_9796 and tr_A0A2I2UKT5_A0A2I2UKT5_FELCA_9685 are exactly identical! WARNING: Sequences tr_F6U9P1_F6U9P1_HORSE_9796 and tr_A0A2U3XJ17_A0A2U3XJ17_LEPWE_9713 are exactly identical! WARNING: Sequences tr_W5P0W8_W5P0W8_SHEEP_9940 and tr_E1BLQ2_E1BLQ2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P5S4_W5P5S4_SHEEP_9940 and tr_F1N7J9_F1N7J9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P5U6_W5P5U6_SHEEP_9940 and tr_F1N7K0_F1N7K0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5Q5P2_W5Q5P2_SHEEP_9940 and tr_A0A2U4C2Z2_A0A2U4C2Z2_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5Q5P2_W5Q5P2_SHEEP_9940 and tr_A0A2Y9MGP6_A0A2Y9MGP6_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q86TJ5_ZN554_HUMAN_9606 and tr_A0A2I3NCV2_A0A2I3NCV2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5QXZ3_A0A1D5QXZ3_MACMU_9544 and tr_F7I1S8_F7I1S8_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A1D5QXZ3_A0A1D5QXZ3_MACMU_9544 and tr_G7PZ52_G7PZ52_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5QXZ3_A0A1D5QXZ3_MACMU_9544 and tr_A0A0A0MWA4_A0A0A0MWA4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5QXZ3_A0A1D5QXZ3_MACMU_9544 and tr_A0A2K6D4T1_A0A2K6D4T1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5QXZ3_A0A1D5QXZ3_MACMU_9544 and tr_A0A2K5YN76_A0A2K5YN76_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1D5RHK4_A0A1D5RHK4_MACMU_9544 and tr_G7PZ54_G7PZ54_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5RHK4_A0A1D5RHK4_MACMU_9544 and tr_A0A0D9R5M6_A0A0D9R5M6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5RHK4_A0A1D5RHK4_MACMU_9544 and tr_A0A2K5LFL4_A0A2K5LFL4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5RHK4_A0A1D5RHK4_MACMU_9544 and tr_A0A2K6E3F7_A0A2K6E3F7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5RIN4_A0A1D5RIN4_MACMU_9544 and tr_A0A2K6CIH7_A0A2K6CIH7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6SAP5_F6SAP5_MACMU_9544 and tr_A0A0A0MU18_A0A0A0MU18_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6X8L1_F6X8L1_MACMU_9544 and tr_A0A2K5YZ59_A0A2K5YZ59_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6XNX2_F6XNX2_MACMU_9544 and tr_A0A2K6C0P0_A0A2K6C0P0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7A732_F7A732_MACMU_9544 and tr_G7PZ47_G7PZ47_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7A732_F7A732_MACMU_9544 and tr_A0A0A0MU12_A0A0A0MU12_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7A732_F7A732_MACMU_9544 and tr_A0A0D9R5S5_A0A0D9R5S5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7A732_F7A732_MACMU_9544 and tr_A0A2K5KTK7_A0A2K5KTK7_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7A732_F7A732_MACMU_9544 and tr_A0A2K6E112_A0A2K6E112_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7A732_F7A732_MACMU_9544 and tr_A0A2K5ZCG0_A0A2K5ZCG0_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7DX78_F7DX78_MACMU_9544 and tr_F7IQH6_F7IQH6_CALJA_9483 are exactly identical! WARNING: Sequences tr_F7DX78_F7DX78_MACMU_9544 and tr_A0A096N193_A0A096N193_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7DX78_F7DX78_MACMU_9544 and tr_A0A0D9RFX4_A0A0D9RFX4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7DX78_F7DX78_MACMU_9544 and tr_A0A2K5KLE0_A0A2K5KLE0_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7DX78_F7DX78_MACMU_9544 and tr_A0A2K6CUY2_A0A2K6CUY2_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7DX78_F7DX78_MACMU_9544 and tr_A0A2K6A6J3_A0A2K6A6J3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7GB84_F7GB84_MACMU_9544 and tr_A0A2I3LTF8_A0A2I3LTF8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GB84_F7GB84_MACMU_9544 and tr_A0A0D9R803_A0A0D9R803_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GB84_F7GB84_MACMU_9544 and tr_A0A2K5LBC9_A0A2K5LBC9_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GB84_F7GB84_MACMU_9544 and tr_A0A2K6BN44_A0A2K6BN44_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GB84_F7GB84_MACMU_9544 and tr_A0A2K5Y7I0_A0A2K5Y7I0_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7GB84_F7GB84_MACMU_9544 and tr_A0A2K6ALD2_A0A2K6ALD2_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7GDL8_F7GDL8_MACMU_9544 and tr_G7PJI7_G7PJI7_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GDL8_F7GDL8_MACMU_9544 and tr_A0A0D9S5S9_A0A0D9S5S9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GDL8_F7GDL8_MACMU_9544 and tr_A0A2K5LKK9_A0A2K5LKK9_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HGS7_F7HGS7_MACMU_9544 and tr_G7P726_G7P726_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HGS7_F7HGS7_MACMU_9544 and tr_A0A2I3N0G0_A0A2I3N0G0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HGS7_F7HGS7_MACMU_9544 and tr_A0A2K5N371_A0A2K5N371_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HGS7_F7HGS7_MACMU_9544 and tr_A0A2K6CE40_A0A2K6CE40_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3T378_G3T378_LOXAF_9785 and tr_D2I3U9_D2I3U9_AILME_9646 are exactly identical! WARNING: Sequences tr_G3T378_G3T378_LOXAF_9785 and tr_A0A337SDT6_A0A337SDT6_FELCA_9685 are exactly identical! WARNING: Sequences tr_G3T378_G3T378_LOXAF_9785 and tr_A0A2U3W9W7_A0A2U3W9W7_ODORO_9708 are exactly identical! WARNING: Sequences tr_G3T378_G3T378_LOXAF_9785 and tr_A0A2U3YRY7_A0A2U3YRY7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G3T378_G3T378_LOXAF_9785 and tr_A0A384DMB8_A0A384DMB8_URSMA_29073 are exactly identical! WARNING: Sequences tr_F7A3V5_F7A3V5_CALJA_9483 and tr_A0A2I3NBJ5_A0A2I3NBJ5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7A3V5_F7A3V5_CALJA_9483 and tr_A0A2K5M013_A0A2K5M013_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7A3V5_F7A3V5_CALJA_9483 and tr_A0A2K5YYE3_A0A2K5YYE3_MANLE_9568 are exactly identical! WARNING: Sequences tr_I3LNL2_I3LNL2_PIG_9823 and tr_A0A1U7TCK5_A0A1U7TCK5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_I3LNL2_I3LNL2_PIG_9823 and tr_A0A2U4C4P0_A0A2U4C4P0_TURTR_9739 are exactly identical! WARNING: Sequences tr_I3LNL2_I3LNL2_PIG_9823 and tr_A0A2Y9RRI5_A0A2Y9RRI5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_I3LNL2_I3LNL2_PIG_9823 and tr_A0A383ZVJ3_A0A383ZVJ3_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1L311_G1L311_AILME_9646 and tr_A0A384D9K3_A0A384D9K3_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1L6F8_G1L6F8_AILME_9646 and tr_A0A1S2ZYU0_A0A1S2ZYU0_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1L6F8_G1L6F8_AILME_9646 and tr_A0A2U4BD49_A0A2U4BD49_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1L6F8_G1L6F8_AILME_9646 and tr_A0A2U3YYR0_A0A2U3YYR0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1L6F8_G1L6F8_AILME_9646 and tr_A0A2Y9P0Z9_A0A2Y9P0Z9_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1L6F8_G1L6F8_AILME_9646 and tr_A0A2Y9EZW8_A0A2Y9EZW8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1L6F8_G1L6F8_AILME_9646 and tr_A0A384D1F5_A0A384D1F5_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LDS8_G1LDS8_AILME_9646 and tr_A0A2U3WZQ0_A0A2U3WZQ0_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1LDS8_G1LDS8_AILME_9646 and tr_A0A2U3XX53_A0A2U3XX53_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1LDS8_G1LDS8_AILME_9646 and tr_A0A2Y9KSL1_A0A2Y9KSL1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1LDS8_G1LDS8_AILME_9646 and tr_A0A384BNT2_A0A384BNT2_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LDT3_G1LDT3_AILME_9646 and tr_A0A384BNW3_A0A384BNW3_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LSJ6_G1LSJ6_AILME_9646 and tr_A0A384DMX5_A0A384DMX5_URSMA_29073 are exactly identical! WARNING: Sequences tr_G7PYP6_G7PYP6_MACFA_9541 and tr_A0A2K6BA42_A0A2K6BA42_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q29RN3_Q29RN3_BOVIN_9913 and tr_A0A2Y9MKI8_A0A2Y9MKI8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2I2UC02_A0A2I2UC02_FELCA_9685 and tr_A0A383YVD0_A0A383YVD0_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A0A0MW60_A0A0A0MW60_PAPAN_9555 and tr_A0A2K5MPF9_A0A2K5MPF9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0A0MW60_A0A0A0MW60_PAPAN_9555 and tr_A0A2K6B7J0_A0A2K6B7J0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1S3GKW6_A0A1S3GKW6_DIPOR_10020 and tr_A0A3Q0EDN8_A0A3Q0EDN8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A3Q0EFJ8_A0A3Q0EFJ8_TARSY_1868482 and tr_A0A2U3V9T7_A0A2U3V9T7_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A3Q0EFJ8_A0A3Q0EFJ8_TARSY_1868482 and tr_A0A2Y9LVS1_A0A2Y9LVS1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V7M1_A0A2U3V7M1_TURTR_9739 and tr_A0A2U4ATW9_A0A2U4ATW9_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U3V7M1_A0A2U3V7M1_TURTR_9739 and tr_A0A2Y9P3D3_A0A2Y9P3D3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V7M1_A0A2U3V7M1_TURTR_9739 and tr_A0A2Y9F4V4_A0A2Y9F4V4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V7M1_A0A2U3V7M1_TURTR_9739 and tr_A0A383ZK52_A0A383ZK52_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4ATQ6_A0A2U4ATQ6_TURTR_9739 and tr_A0A2Y9PBH7_A0A2Y9PBH7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AUC6_A0A2U4AUC6_TURTR_9739 and tr_A0A383ZKB0_A0A383ZKB0_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4B614_A0A2U4B614_TURTR_9739 and tr_A0A2Y9ELZ9_A0A2Y9ELZ9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4B614_A0A2U4B614_TURTR_9739 and tr_A0A383Z1P8_A0A383Z1P8_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4BTW3_A0A2U4BTW3_TURTR_9739 and tr_A0A2Y9PHQ7_A0A2Y9PHQ7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BU51_A0A2U4BU51_TURTR_9739 and tr_A0A2Y9P4T0_A0A2Y9P4T0_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BU51_A0A2U4BU51_TURTR_9739 and tr_A0A2Y9TFE1_A0A2Y9TFE1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BUA1_A0A2U4BUA1_TURTR_9739 and tr_A0A2U4BUA5_A0A2U4BUA5_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U4BUA1_A0A2U4BUA1_TURTR_9739 and tr_A0A2Y9P386_A0A2Y9P386_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3VU53_A0A2U3VU53_ODORO_9708 and tr_A0A2U3YAL6_A0A2U3YAL6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3WZ94_A0A2U3WZ94_ODORO_9708 and tr_A0A2U3YPZ5_A0A2U3YPZ5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3X0I5_A0A2U3X0I5_ODORO_9708 and tr_A0A2U3Y3Q2_A0A2U3Y3Q2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3ZEC0_A0A2U3ZEC0_ODORO_9708 and tr_A0A2U3YAA0_A0A2U3YAA0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3ZEC0_A0A2U3ZEC0_ODORO_9708 and tr_A0A2Y9LLY7_A0A2Y9LLY7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2U3ZQD6_A0A2U3ZQD6_ODORO_9708 and tr_A0A2Y9PGR0_A0A2Y9PGR0_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3ZQD6_A0A2U3ZQD6_ODORO_9708 and tr_A0A2Y9F1C8_A0A2Y9F1C8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3ZQD6_A0A2U3ZQD6_ODORO_9708 and tr_A0A384BJQ7_A0A384BJQ7_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2U3ZQD6_A0A2U3ZQD6_ODORO_9708 and tr_A0A384AC92_A0A384AC92_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9LXV8_A0A2Y9LXV8_DELLE_9749 and tr_A0A384A460_A0A384A460_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9MNC2_A0A2Y9MNC2_DELLE_9749 and tr_A0A2Y9F3K7_A0A2Y9F3K7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9MNC2_A0A2Y9MNC2_DELLE_9749 and tr_A0A383ZKS4_A0A383ZKS4_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9MNI0_A0A2Y9MNI0_DELLE_9749 and tr_A0A2Y9FQZ5_A0A2Y9FQZ5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9S0A9_A0A2Y9S0A9_PHYCD_9755 and tr_A0A383Z4X8_A0A383Z4X8_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 433 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A8MT65/3_mltree/A8MT65.raxml.reduced.phy Alignment comprises 1 partitions and 35 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 35 / 35 Gaps: 0.19 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A8MT65/3_mltree/A8MT65.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 999 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 35 / 2800 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -40165.351594] Initial branch length optimization [00:00:01 -35184.587672] Model parameter optimization (eps = 10.000000) [00:00:18 -34863.558802] AUTODETECT spr round 1 (radius: 5) [00:01:24 -26888.166151] AUTODETECT spr round 2 (radius: 10) [00:02:42 -17290.738767] AUTODETECT spr round 3 (radius: 15) [00:04:15 -13162.630837] AUTODETECT spr round 4 (radius: 20) [00:06:03 -10875.691692] AUTODETECT spr round 5 (radius: 25) [00:08:03 -10403.392398] SPR radius for FAST iterations: 25 (autodetect) [00:08:03 -10403.392398] Model parameter optimization (eps = 3.000000) [00:08:17 -10385.934340] FAST spr round 1 (radius: 25) [00:09:25 -8682.447667] FAST spr round 2 (radius: 25) [00:10:29 -8583.566691] FAST spr round 3 (radius: 25) [00:11:31 -8574.497631] FAST spr round 4 (radius: 25) [00:12:32 -8565.338642] FAST spr round 5 (radius: 25) [00:13:32 -8565.220847] FAST spr round 6 (radius: 25) [00:14:31 -8565.220518] Model parameter optimization (eps = 1.000000) [00:14:37 -8564.900138] SLOW spr round 1 (radius: 5) [00:15:45 -8561.830024] SLOW spr round 2 (radius: 5) [00:16:52 -8561.793877] SLOW spr round 3 (radius: 10) [00:18:00 -8561.468862] SLOW spr round 4 (radius: 5) [00:19:16 -8561.235517] SLOW spr round 5 (radius: 5) [00:20:26 -8561.235517] SLOW spr round 6 (radius: 10) [00:21:33 -8560.269433] SLOW spr round 7 (radius: 5) [00:22:49 -8560.269419] SLOW spr round 8 (radius: 10) [00:23:59 -8560.266017] SLOW spr round 9 (radius: 15) [00:25:28 -8550.449769] SLOW spr round 10 (radius: 5) [00:26:48 -8549.152822] SLOW spr round 11 (radius: 5) [00:28:00 -8549.152623] SLOW spr round 12 (radius: 10) [00:29:08 -8549.152611] SLOW spr round 13 (radius: 15) [00:30:36 -8549.152610] SLOW spr round 14 (radius: 20) [00:32:53 -8542.931637] SLOW spr round 15 (radius: 5) [00:34:13 -8536.476364] SLOW spr round 16 (radius: 5) [00:35:25 -8536.476288] SLOW spr round 17 (radius: 10) [00:36:34 -8536.476287] SLOW spr round 18 (radius: 15) [00:38:01 -8536.476287] SLOW spr round 19 (radius: 20) [00:40:16 -8536.476287] SLOW spr round 20 (radius: 25) [00:43:02 -8536.476287] Model parameter optimization (eps = 0.100000) [00:43:06] ML tree search #1, logLikelihood: -8536.420243 [00:43:06 -40312.478299] Initial branch length optimization [00:43:07 -35244.115513] Model parameter optimization (eps = 10.000000) [00:43:20 -34958.097655] AUTODETECT spr round 1 (radius: 5) [00:44:26 -25978.878894] AUTODETECT spr round 2 (radius: 10) [00:45:42 -17660.821652] AUTODETECT spr round 3 (radius: 15) [00:47:14 -12746.755127] AUTODETECT spr round 4 (radius: 20) [00:49:02 -10461.793302] AUTODETECT spr round 5 (radius: 25) [00:51:03 -10323.280580] SPR radius for FAST iterations: 25 (autodetect) [00:51:03 -10323.280580] Model parameter optimization (eps = 3.000000) [00:51:18 -10295.738721] FAST spr round 1 (radius: 25) [00:52:26 -8651.223163] FAST spr round 2 (radius: 25) [00:53:29 -8539.626741] FAST spr round 3 (radius: 25) [00:54:31 -8531.733476] FAST spr round 4 (radius: 25) [00:55:31 -8531.645839] Model parameter optimization (eps = 1.000000) [00:55:36 -8530.776285] SLOW spr round 1 (radius: 5) [00:56:44 -8526.830408] SLOW spr round 2 (radius: 5) [00:57:51 -8526.407710] SLOW spr round 3 (radius: 5) [00:58:57 -8526.407630] SLOW spr round 4 (radius: 10) [01:00:05 -8522.928797] SLOW spr round 5 (radius: 5) [01:01:22 -8522.685366] SLOW spr round 6 (radius: 5) [01:02:33 -8522.685366] SLOW spr round 7 (radius: 10) [01:03:41 -8522.685365] SLOW spr round 8 (radius: 15) [01:05:11 -8505.340337] SLOW spr round 9 (radius: 5) [01:06:30 -8505.340307] SLOW spr round 10 (radius: 10) [01:07:44 -8503.879656] SLOW spr round 11 (radius: 5) [01:08:59 -8503.879607] SLOW spr round 12 (radius: 10) [01:10:09 -8503.879605] SLOW spr round 13 (radius: 15) [01:11:37 -8503.879605] SLOW spr round 14 (radius: 20) [01:13:46 -8488.826289] SLOW spr round 15 (radius: 5) [01:15:07 -8468.510860] SLOW spr round 16 (radius: 5) [01:16:20 -8468.510860] SLOW spr round 17 (radius: 10) [01:17:29 -8468.510860] SLOW spr round 18 (radius: 15) [01:18:56 -8468.510860] SLOW spr round 19 (radius: 20) [01:21:05 -8468.510860] SLOW spr round 20 (radius: 25) [01:23:45 -8468.510860] Model parameter optimization (eps = 0.100000) [01:23:51] ML tree search #2, logLikelihood: -8468.497007 [01:23:51 -40426.786740] Initial branch length optimization [01:23:52 -35368.406800] Model parameter optimization (eps = 10.000000) [01:24:08 -35054.621812] AUTODETECT spr round 1 (radius: 5) [01:25:15 -26272.648718] AUTODETECT spr round 2 (radius: 10) [01:26:36 -17534.585273] AUTODETECT spr round 3 (radius: 15) [01:28:19 -13498.138422] AUTODETECT spr round 4 (radius: 20) [01:30:11 -11702.042925] AUTODETECT spr round 5 (radius: 25) [01:32:32 -10803.866045] SPR radius for FAST iterations: 25 (autodetect) [01:32:32 -10803.866045] Model parameter optimization (eps = 3.000000) [01:32:40 -10792.026416] FAST spr round 1 (radius: 25) [01:33:50 -8848.247923] FAST spr round 2 (radius: 25) [01:34:54 -8664.961181] FAST spr round 3 (radius: 25) [01:35:57 -8663.191888] FAST spr round 4 (radius: 25) [01:36:58 -8662.920483] FAST spr round 5 (radius: 25) [01:37:58 -8662.920482] Model parameter optimization (eps = 1.000000) [01:38:01 -8662.810194] SLOW spr round 1 (radius: 5) [01:39:10 -8662.614576] SLOW spr round 2 (radius: 5) [01:40:17 -8662.614508] SLOW spr round 3 (radius: 10) [01:41:26 -8661.236987] SLOW spr round 4 (radius: 5) [01:42:43 -8660.800966] SLOW spr round 5 (radius: 5) [01:43:54 -8660.800966] SLOW spr round 6 (radius: 10) [01:45:03 -8660.800966] SLOW spr round 7 (radius: 15) [01:46:35 -8639.941740] SLOW spr round 8 (radius: 5) [01:47:54 -8619.644276] SLOW spr round 9 (radius: 5) [01:49:08 -8619.309380] SLOW spr round 10 (radius: 5) [01:50:17 -8619.254701] SLOW spr round 11 (radius: 10) [01:51:26 -8617.227493] SLOW spr round 12 (radius: 5) [01:52:42 -8617.227466] SLOW spr round 13 (radius: 10) [01:53:53 -8616.648882] SLOW spr round 14 (radius: 5) [01:55:09 -8616.648619] SLOW spr round 15 (radius: 10) [01:56:19 -8616.648616] SLOW spr round 16 (radius: 15) [01:57:47 -8616.148619] SLOW spr round 17 (radius: 5) [01:59:07 -8615.440092] SLOW spr round 18 (radius: 5) [02:00:18 -8615.440092] SLOW spr round 19 (radius: 10) [02:01:27 -8615.440092] SLOW spr round 20 (radius: 15) [02:02:54 -8615.440092] SLOW spr round 21 (radius: 20) [02:05:07 -8573.168764] SLOW spr round 22 (radius: 5) [02:06:30 -8548.493396] SLOW spr round 23 (radius: 5) [02:07:43 -8545.715038] SLOW spr round 24 (radius: 5) [02:08:51 -8544.031147] SLOW spr round 25 (radius: 5) [02:09:58 -8544.031140] SLOW spr round 26 (radius: 10) [02:11:06 -8534.749135] SLOW spr round 27 (radius: 5) [02:12:23 -8525.235593] SLOW spr round 28 (radius: 5) [02:13:34 -8525.235593] SLOW spr round 29 (radius: 10) [02:14:42 -8525.235593] SLOW spr round 30 (radius: 15) [02:16:11 -8525.235593] SLOW spr round 31 (radius: 20) [02:18:22 -8524.941694] SLOW spr round 32 (radius: 5) [02:19:44 -8520.614551] SLOW spr round 33 (radius: 5) [02:20:57 -8520.593210] SLOW spr round 34 (radius: 10) [02:22:06 -8520.593112] SLOW spr round 35 (radius: 15) [02:23:35 -8520.593106] SLOW spr round 36 (radius: 20) [02:25:46 -8520.593106] SLOW spr round 37 (radius: 25) [02:28:43 -8510.599527] SLOW spr round 38 (radius: 5) [02:30:03 -8510.599517] SLOW spr round 39 (radius: 10) [02:31:17 -8510.599517] SLOW spr round 40 (radius: 15) [02:32:44 -8510.599517] SLOW spr round 41 (radius: 20) [02:35:00 -8510.599517] SLOW spr round 42 (radius: 25) [02:37:56 -8510.599517] Model parameter optimization (eps = 0.100000) [02:38:03] ML tree search #3, logLikelihood: -8508.796314 [02:38:03 -40282.833302] Initial branch length optimization [02:38:04 -35305.924937] Model parameter optimization (eps = 10.000000) [02:38:17 -34983.168905] AUTODETECT spr round 1 (radius: 5) [02:39:24 -26729.844670] AUTODETECT spr round 2 (radius: 10) [02:40:42 -17784.653282] AUTODETECT spr round 3 (radius: 15) [02:42:12 -12233.486710] AUTODETECT spr round 4 (radius: 20) [02:43:57 -10792.134447] AUTODETECT spr round 5 (radius: 25) [02:46:12 -10511.668551] SPR radius for FAST iterations: 25 (autodetect) [02:46:12 -10511.668551] Model parameter optimization (eps = 3.000000) [02:46:26 -10488.720205] FAST spr round 1 (radius: 25) [02:47:34 -8643.815119] FAST spr round 2 (radius: 25) [02:48:38 -8469.569110] FAST spr round 3 (radius: 25) [02:49:41 -8459.735456] FAST spr round 4 (radius: 25) [02:50:43 -8459.735357] Model parameter optimization (eps = 1.000000) [02:50:49 -8458.790136] SLOW spr round 1 (radius: 5) [02:51:59 -8453.432727] SLOW spr round 2 (radius: 5) [02:53:06 -8453.306771] SLOW spr round 3 (radius: 5) [02:54:12 -8453.306720] SLOW spr round 4 (radius: 10) [02:55:21 -8453.306705] SLOW spr round 5 (radius: 15) [02:57:00 -8444.836231] SLOW spr round 6 (radius: 5) [02:58:21 -8442.325019] SLOW spr round 7 (radius: 5) [02:59:35 -8441.404263] SLOW spr round 8 (radius: 5) [03:00:45 -8441.403812] SLOW spr round 9 (radius: 10) [03:01:54 -8441.403755] SLOW spr round 10 (radius: 15) [03:03:27 -8440.492527] SLOW spr round 11 (radius: 5) [03:04:47 -8440.492502] SLOW spr round 12 (radius: 10) [03:06:02 -8439.808027] SLOW spr round 13 (radius: 5) [03:07:19 -8438.861358] SLOW spr round 14 (radius: 5) [03:08:29 -8438.861343] SLOW spr round 15 (radius: 10) [03:09:38 -8438.861342] SLOW spr round 16 (radius: 15) [03:11:09 -8438.861342] SLOW spr round 17 (radius: 20) [03:13:29 -8437.697425] SLOW spr round 18 (radius: 5) [03:14:49 -8437.697416] SLOW spr round 19 (radius: 10) [03:16:04 -8437.299624] SLOW spr round 20 (radius: 5) [03:17:20 -8437.298665] SLOW spr round 21 (radius: 10) [03:18:31 -8437.298647] SLOW spr round 22 (radius: 15) [03:20:01 -8437.298647] SLOW spr round 23 (radius: 20) [03:22:26 -8436.614311] SLOW spr round 24 (radius: 5) [03:23:46 -8436.614205] SLOW spr round 25 (radius: 10) [03:25:00 -8436.614202] SLOW spr round 26 (radius: 15) [03:26:30 -8436.614201] SLOW spr round 27 (radius: 20) [03:29:00 -8436.614200] SLOW spr round 28 (radius: 25) [03:32:09 -8434.547448] SLOW spr round 29 (radius: 5) [03:33:30 -8434.547436] SLOW spr round 30 (radius: 10) [03:34:44 -8434.547436] SLOW spr round 31 (radius: 15) [03:36:15 -8434.547436] SLOW spr round 32 (radius: 20) [03:38:44 -8434.547435] SLOW spr round 33 (radius: 25) [03:41:54 -8434.547435] Model parameter optimization (eps = 0.100000) [03:41:59] ML tree search #4, logLikelihood: -8434.432529 [03:41:59 -40404.494417] Initial branch length optimization [03:42:00 -35318.715538] Model parameter optimization (eps = 10.000000) [03:42:16 -35001.251765] AUTODETECT spr round 1 (radius: 5) [03:43:23 -26604.535428] AUTODETECT spr round 2 (radius: 10) [03:44:43 -17044.925225] AUTODETECT spr round 3 (radius: 15) [03:46:12 -12716.053833] AUTODETECT spr round 4 (radius: 20) [03:47:58 -10877.085134] AUTODETECT spr round 5 (radius: 25) [03:50:16 -10502.939019] SPR radius for FAST iterations: 25 (autodetect) [03:50:16 -10502.939019] Model parameter optimization (eps = 3.000000) [03:50:29 -10466.294758] FAST spr round 1 (radius: 25) [03:51:38 -8752.146321] FAST spr round 2 (radius: 25) [03:52:42 -8661.154256] FAST spr round 3 (radius: 25) [03:53:46 -8657.258247] FAST spr round 4 (radius: 25) [03:54:47 -8657.257713] Model parameter optimization (eps = 1.000000) [03:54:52 -8656.727333] SLOW spr round 1 (radius: 5) [03:56:02 -8655.621433] SLOW spr round 2 (radius: 5) [03:57:11 -8655.064884] SLOW spr round 3 (radius: 5) [03:58:19 -8655.064755] SLOW spr round 4 (radius: 10) [03:59:29 -8655.064734] SLOW spr round 5 (radius: 15) [04:01:01 -8646.215537] SLOW spr round 6 (radius: 5) [04:02:22 -8623.817618] SLOW spr round 7 (radius: 5) [04:03:39 -8619.551105] SLOW spr round 8 (radius: 5) [04:04:48 -8619.551027] SLOW spr round 9 (radius: 10) [04:05:58 -8616.630625] SLOW spr round 10 (radius: 5) [04:07:17 -8616.612195] SLOW spr round 11 (radius: 10) [04:08:31 -8607.353456] SLOW spr round 12 (radius: 5) [04:09:49 -8605.305733] SLOW spr round 13 (radius: 5) [04:11:03 -8605.305665] SLOW spr round 14 (radius: 10) [04:12:13 -8605.305657] SLOW spr round 15 (radius: 15) [04:13:42 -8603.946234] SLOW spr round 16 (radius: 5) [04:15:04 -8570.032220] SLOW spr round 17 (radius: 5) [04:16:19 -8569.973441] SLOW spr round 18 (radius: 10) [04:17:30 -8569.970821] SLOW spr round 19 (radius: 15) [04:19:00 -8569.164245] SLOW spr round 20 (radius: 5) [04:20:22 -8569.163468] SLOW spr round 21 (radius: 10) [04:21:37 -8569.163345] SLOW spr round 22 (radius: 15) [04:23:04 -8569.163304] SLOW spr round 23 (radius: 20) [04:25:19 -8566.226471] SLOW spr round 24 (radius: 5) [04:26:41 -8566.183876] SLOW spr round 25 (radius: 10) [04:27:56 -8566.183200] SLOW spr round 26 (radius: 15) [04:29:24 -8566.183043] SLOW spr round 27 (radius: 20) [04:31:41 -8562.854061] SLOW spr round 28 (radius: 5) [04:33:04 -8555.072020] SLOW spr round 29 (radius: 5) [04:34:21 -8519.458862] SLOW spr round 30 (radius: 5) [04:35:32 -8494.014732] SLOW spr round 31 (radius: 5) [04:36:42 -8470.146042] SLOW spr round 32 (radius: 5) [04:37:50 -8470.145651] SLOW spr round 33 (radius: 10) [04:39:00 -8470.145604] SLOW spr round 34 (radius: 15) [04:40:31 -8468.369857] SLOW spr round 35 (radius: 5) [04:41:51 -8464.806864] SLOW spr round 36 (radius: 5) [04:43:04 -8464.804700] SLOW spr round 37 (radius: 10) [04:44:14 -8464.804488] SLOW spr round 38 (radius: 15) [04:45:44 -8464.804470] SLOW spr round 39 (radius: 20) [04:47:54 -8464.804469] SLOW spr round 40 (radius: 25) [04:50:40 -8464.058026] SLOW spr round 41 (radius: 5) [04:52:02 -8464.056801] SLOW spr round 42 (radius: 10) [04:53:16 -8464.056742] SLOW spr round 43 (radius: 15) [04:54:44 -8464.056737] SLOW spr round 44 (radius: 20) [04:56:55 -8464.056735] SLOW spr round 45 (radius: 25) [04:59:39 -8464.056735] Model parameter optimization (eps = 0.100000) [04:59:51] ML tree search #5, logLikelihood: -8459.150234 [04:59:51 -40356.609407] Initial branch length optimization [04:59:52 -35309.262454] Model parameter optimization (eps = 10.000000) [05:00:09 -35036.475606] AUTODETECT spr round 1 (radius: 5) [05:01:16 -26331.531153] AUTODETECT spr round 2 (radius: 10) [05:02:33 -17020.463827] AUTODETECT spr round 3 (radius: 15) [05:04:07 -12365.816672] AUTODETECT spr round 4 (radius: 20) [05:05:41 -11012.303466] AUTODETECT spr round 5 (radius: 25) [05:07:29 -10470.201454] SPR radius for FAST iterations: 25 (autodetect) [05:07:29 -10470.201454] Model parameter optimization (eps = 3.000000) [05:07:41 -10455.257827] FAST spr round 1 (radius: 25) [05:08:50 -8704.656810] FAST spr round 2 (radius: 25) [05:09:54 -8547.487885] FAST spr round 3 (radius: 25) [05:10:56 -8546.578836] FAST spr round 4 (radius: 25) [05:11:57 -8546.577579] Model parameter optimization (eps = 1.000000) [05:12:00 -8545.826319] SLOW spr round 1 (radius: 5) [05:13:10 -8543.354708] SLOW spr round 2 (radius: 5) [05:14:18 -8542.096146] SLOW spr round 3 (radius: 5) [05:15:26 -8541.844575] SLOW spr round 4 (radius: 5) [05:16:33 -8541.844454] SLOW spr round 5 (radius: 10) [05:17:41 -8539.630088] SLOW spr round 6 (radius: 5) [05:18:59 -8539.484034] SLOW spr round 7 (radius: 5) [05:20:11 -8539.484030] SLOW spr round 8 (radius: 10) [05:21:19 -8539.484030] SLOW spr round 9 (radius: 15) [05:22:49 -8536.801545] SLOW spr round 10 (radius: 5) [05:24:10 -8536.801433] SLOW spr round 11 (radius: 10) [05:25:23 -8536.801432] SLOW spr round 12 (radius: 15) [05:26:50 -8536.801432] SLOW spr round 13 (radius: 20) [05:29:06 -8521.524501] SLOW spr round 14 (radius: 5) [05:30:27 -8507.212520] SLOW spr round 15 (radius: 5) [05:31:42 -8503.361028] SLOW spr round 16 (radius: 5) [05:32:51 -8503.277325] SLOW spr round 17 (radius: 10) [05:34:00 -8503.277239] SLOW spr round 18 (radius: 15) [05:35:29 -8503.277198] SLOW spr round 19 (radius: 20) [05:37:37 -8502.823018] SLOW spr round 20 (radius: 5) [05:38:57 -8502.823011] SLOW spr round 21 (radius: 10) [05:40:11 -8501.674107] SLOW spr round 22 (radius: 5) [05:41:27 -8501.673992] SLOW spr round 23 (radius: 10) [05:42:38 -8501.673978] SLOW spr round 24 (radius: 15) [05:44:05 -8501.673974] SLOW spr round 25 (radius: 20) [05:46:16 -8501.446355] SLOW spr round 26 (radius: 5) [05:47:36 -8501.446309] SLOW spr round 27 (radius: 10) [05:48:49 -8501.446309] SLOW spr round 28 (radius: 15) [05:50:15 -8501.446309] SLOW spr round 29 (radius: 20) [05:52:26 -8501.446309] SLOW spr round 30 (radius: 25) [05:55:04 -8501.446309] Model parameter optimization (eps = 0.100000) [05:55:09] ML tree search #6, logLikelihood: -8501.052338 [05:55:09 -40258.503997] Initial branch length optimization [05:55:10 -35230.966491] Model parameter optimization (eps = 10.000000) [05:55:23 -34929.379368] AUTODETECT spr round 1 (radius: 5) [05:56:31 -25828.422393] AUTODETECT spr round 2 (radius: 10) [05:57:52 -16458.170225] AUTODETECT spr round 3 (radius: 15) [05:59:23 -11932.675713] AUTODETECT spr round 4 (radius: 20) [06:01:14 -10726.979209] AUTODETECT spr round 5 (radius: 25) [06:03:31 -10431.823332] SPR radius for FAST iterations: 25 (autodetect) [06:03:31 -10431.823332] Model parameter optimization (eps = 3.000000) [06:03:43 -10413.944203] FAST spr round 1 (radius: 25) [06:04:50 -8695.109495] FAST spr round 2 (radius: 25) [06:05:55 -8515.052221] FAST spr round 3 (radius: 25) [06:06:58 -8506.178746] FAST spr round 4 (radius: 25) [06:08:01 -8505.811296] FAST spr round 5 (radius: 25) [06:09:02 -8505.810891] Model parameter optimization (eps = 1.000000) [06:09:06 -8504.997023] SLOW spr round 1 (radius: 5) [06:10:15 -8504.269899] SLOW spr round 2 (radius: 5) [06:11:23 -8504.269469] SLOW spr round 3 (radius: 10) [06:12:32 -8504.269406] SLOW spr round 4 (radius: 15) [06:14:07 -8502.518879] SLOW spr round 5 (radius: 5) [06:15:30 -8496.919699] SLOW spr round 6 (radius: 5) [06:16:43 -8496.918944] SLOW spr round 7 (radius: 10) [06:17:54 -8495.644441] SLOW spr round 8 (radius: 5) [06:19:12 -8495.513934] SLOW spr round 9 (radius: 5) [06:20:24 -8495.513856] SLOW spr round 10 (radius: 10) [06:21:33 -8495.513852] SLOW spr round 11 (radius: 15) [06:23:06 -8492.663757] SLOW spr round 12 (radius: 5) [06:24:27 -8492.663699] SLOW spr round 13 (radius: 10) [06:25:42 -8492.663697] SLOW spr round 14 (radius: 15) [06:27:11 -8491.125359] SLOW spr round 15 (radius: 5) [06:28:32 -8491.125334] SLOW spr round 16 (radius: 10) [06:29:47 -8491.125329] SLOW spr round 17 (radius: 15) [06:31:16 -8491.125329] SLOW spr round 18 (radius: 20) [06:33:47 -8487.389157] SLOW spr round 19 (radius: 5) [06:35:09 -8486.863161] SLOW spr round 20 (radius: 5) [06:36:23 -8486.863157] SLOW spr round 21 (radius: 10) [06:37:33 -8486.863155] SLOW spr round 22 (radius: 15) [06:39:04 -8486.863155] SLOW spr round 23 (radius: 20) [06:41:31 -8485.841652] SLOW spr round 24 (radius: 5) [06:42:52 -8484.627767] SLOW spr round 25 (radius: 5) [06:44:05 -8484.627762] SLOW spr round 26 (radius: 10) [06:45:15 -8484.627762] SLOW spr round 27 (radius: 15) [06:46:46 -8484.627762] SLOW spr round 28 (radius: 20) [06:49:13 -8483.710632] SLOW spr round 29 (radius: 5) [06:50:33 -8483.710631] SLOW spr round 30 (radius: 10) [06:51:48 -8483.710631] SLOW spr round 31 (radius: 15) [06:53:16 -8483.710631] SLOW spr round 32 (radius: 20) [06:55:47 -8483.710631] SLOW spr round 33 (radius: 25) [06:58:50 -8460.161144] SLOW spr round 34 (radius: 5) [07:00:12 -8439.667845] SLOW spr round 35 (radius: 5) [07:01:26 -8439.667845] SLOW spr round 36 (radius: 10) [07:02:36 -8439.667845] SLOW spr round 37 (radius: 15) [07:04:07 -8439.667845] SLOW spr round 38 (radius: 20) [07:06:33 -8439.667845] SLOW spr round 39 (radius: 25) [07:09:38 -8439.667845] Model parameter optimization (eps = 0.100000) [07:09:42] ML tree search #7, logLikelihood: -8439.652359 [07:09:42 -40137.761768] Initial branch length optimization [07:09:43 -35165.460016] Model parameter optimization (eps = 10.000000) [07:09:57 -34847.197877] AUTODETECT spr round 1 (radius: 5) [07:11:04 -26648.928727] AUTODETECT spr round 2 (radius: 10) [07:12:22 -16917.881381] AUTODETECT spr round 3 (radius: 15) [07:13:49 -12297.768387] AUTODETECT spr round 4 (radius: 20) [07:15:26 -10796.915694] AUTODETECT spr round 5 (radius: 25) [07:17:29 -10383.587329] SPR radius for FAST iterations: 25 (autodetect) [07:17:29 -10383.587329] Model parameter optimization (eps = 3.000000) [07:17:45 -10334.406923] FAST spr round 1 (radius: 25) [07:18:51 -8715.665233] FAST spr round 2 (radius: 25) [07:19:53 -8625.947250] FAST spr round 3 (radius: 25) [07:20:55 -8604.198606] FAST spr round 4 (radius: 25) [07:21:55 -8595.560880] FAST spr round 5 (radius: 25) [07:22:54 -8595.560216] Model parameter optimization (eps = 1.000000) [07:22:59 -8594.642946] SLOW spr round 1 (radius: 5) [07:24:06 -8592.620558] SLOW spr round 2 (radius: 5) [07:25:11 -8591.177176] SLOW spr round 3 (radius: 5) [07:26:15 -8591.177175] SLOW spr round 4 (radius: 10) [07:27:21 -8590.712379] SLOW spr round 5 (radius: 5) [07:28:36 -8590.458248] SLOW spr round 6 (radius: 5) [07:29:44 -8590.458232] SLOW spr round 7 (radius: 10) [07:30:51 -8589.849974] SLOW spr round 8 (radius: 5) [07:32:04 -8589.849954] SLOW spr round 9 (radius: 10) [07:33:15 -8589.849953] SLOW spr round 10 (radius: 15) [07:34:43 -8576.284981] SLOW spr round 11 (radius: 5) [07:36:03 -8539.776528] SLOW spr round 12 (radius: 5) [07:37:16 -8539.776528] SLOW spr round 13 (radius: 10) [07:38:25 -8539.776528] SLOW spr round 14 (radius: 15) [07:39:54 -8539.776528] SLOW spr round 15 (radius: 20) [07:42:09 -8531.129535] SLOW spr round 16 (radius: 5) [07:43:30 -8489.751606] SLOW spr round 17 (radius: 5) [07:44:43 -8489.751600] SLOW spr round 18 (radius: 10) [07:45:51 -8489.751600] SLOW spr round 19 (radius: 15) [07:47:18 -8489.751600] SLOW spr round 20 (radius: 20) [07:49:31 -8488.915020] SLOW spr round 21 (radius: 5) [07:50:51 -8488.914637] SLOW spr round 22 (radius: 10) [07:52:04 -8488.914633] SLOW spr round 23 (radius: 15) [07:53:31 -8488.914633] SLOW spr round 24 (radius: 20) [07:55:47 -8488.212822] SLOW spr round 25 (radius: 5) [07:57:07 -8488.212789] SLOW spr round 26 (radius: 10) [07:58:20 -8488.212788] SLOW spr round 27 (radius: 15) [07:59:46 -8488.212788] SLOW spr round 28 (radius: 20) [08:02:00 -8488.212788] SLOW spr round 29 (radius: 25) [08:04:45 -8488.212788] Model parameter optimization (eps = 0.100000) [08:04:52] ML tree search #8, logLikelihood: -8488.008162 [08:04:53 -40263.526121] Initial branch length optimization [08:04:53 -35186.830742] Model parameter optimization (eps = 10.000000) [08:05:10 -34893.919993] AUTODETECT spr round 1 (radius: 5) [08:06:15 -26609.481271] AUTODETECT spr round 2 (radius: 10) [08:07:33 -16797.503113] AUTODETECT spr round 3 (radius: 15) [08:09:08 -11756.457948] AUTODETECT spr round 4 (radius: 20) [08:10:51 -10826.162291] AUTODETECT spr round 5 (radius: 25) [08:12:51 -10558.802396] SPR radius for FAST iterations: 25 (autodetect) [08:12:51 -10558.802396] Model parameter optimization (eps = 3.000000) [08:13:08 -10503.631199] FAST spr round 1 (radius: 25) [08:14:16 -8933.085617] FAST spr round 2 (radius: 25) [08:15:20 -8817.687318] FAST spr round 3 (radius: 25) [08:16:22 -8804.423447] FAST spr round 4 (radius: 25) [08:17:22 -8804.422608] Model parameter optimization (eps = 1.000000) [08:17:26 -8803.878876] SLOW spr round 1 (radius: 5) [08:18:34 -8797.697581] SLOW spr round 2 (radius: 5) [08:19:42 -8789.848437] SLOW spr round 3 (radius: 5) [08:20:48 -8789.620887] SLOW spr round 4 (radius: 5) [08:21:54 -8789.620413] SLOW spr round 5 (radius: 10) [08:23:02 -8787.421434] SLOW spr round 6 (radius: 5) [08:24:19 -8786.144275] SLOW spr round 7 (radius: 5) [08:25:29 -8786.143645] SLOW spr round 8 (radius: 10) [08:26:37 -8786.143628] SLOW spr round 9 (radius: 15) [08:28:07 -8785.682871] SLOW spr round 10 (radius: 5) [08:29:25 -8785.682871] SLOW spr round 11 (radius: 10) [08:30:38 -8783.125837] SLOW spr round 12 (radius: 5) [08:31:54 -8781.908061] SLOW spr round 13 (radius: 5) [08:33:04 -8781.907995] SLOW spr round 14 (radius: 10) [08:34:11 -8781.907994] SLOW spr round 15 (radius: 15) [08:35:41 -8781.907994] SLOW spr round 16 (radius: 20) [08:37:51 -8769.032511] SLOW spr round 17 (radius: 5) [08:39:12 -8718.753114] SLOW spr round 18 (radius: 5) [08:40:24 -8718.753097] SLOW spr round 19 (radius: 10) [08:41:33 -8718.753097] SLOW spr round 20 (radius: 15) [08:43:01 -8718.753097] SLOW spr round 21 (radius: 20) [08:45:14 -8718.753097] SLOW spr round 22 (radius: 25) [08:47:51 -8717.011769] SLOW spr round 23 (radius: 5) [08:49:10 -8717.011764] SLOW spr round 24 (radius: 10) [08:50:24 -8717.011764] SLOW spr round 25 (radius: 15) [08:51:51 -8717.011764] SLOW spr round 26 (radius: 20) [08:54:09 -8717.011764] SLOW spr round 27 (radius: 25) [08:56:46 -8717.011764] Model parameter optimization (eps = 0.100000) [08:56:52] ML tree search #9, logLikelihood: -8716.398173 [08:56:52 -40264.353502] Initial branch length optimization [08:56:53 -35291.457448] Model parameter optimization (eps = 10.000000) [08:57:10 -34965.607140] AUTODETECT spr round 1 (radius: 5) [08:58:15 -26377.312060] AUTODETECT spr round 2 (radius: 10) [08:59:32 -16952.609497] AUTODETECT spr round 3 (radius: 15) [09:01:09 -12005.481605] AUTODETECT spr round 4 (radius: 20) [09:02:47 -10685.090088] AUTODETECT spr round 5 (radius: 25) [09:04:34 -10404.798622] SPR radius for FAST iterations: 25 (autodetect) [09:04:34 -10404.798622] Model parameter optimization (eps = 3.000000) [09:04:50 -10353.195696] FAST spr round 1 (radius: 25) [09:05:58 -8714.649306] FAST spr round 2 (radius: 25) [09:07:02 -8559.686057] FAST spr round 3 (radius: 25) [09:08:04 -8547.101946] FAST spr round 4 (radius: 25) [09:09:05 -8543.150478] FAST spr round 5 (radius: 25) [09:10:05 -8543.143156] Model parameter optimization (eps = 1.000000) [09:10:18 -8539.931500] SLOW spr round 1 (radius: 5) [09:11:25 -8536.486064] SLOW spr round 2 (radius: 5) [09:12:33 -8534.722245] SLOW spr round 3 (radius: 5) [09:13:38 -8534.722187] SLOW spr round 4 (radius: 10) [09:14:45 -8534.722175] SLOW spr round 5 (radius: 15) [09:16:11 -8533.610809] SLOW spr round 6 (radius: 5) [09:17:27 -8533.609871] SLOW spr round 7 (radius: 10) [09:18:37 -8532.230495] SLOW spr round 8 (radius: 5) [09:19:50 -8531.738108] SLOW spr round 9 (radius: 5) [09:20:57 -8531.738011] SLOW spr round 10 (radius: 10) [09:22:03 -8531.522654] SLOW spr round 11 (radius: 5) [09:23:16 -8531.522491] SLOW spr round 12 (radius: 10) [09:24:24 -8531.522487] SLOW spr round 13 (radius: 15) [09:25:45 -8531.522487] SLOW spr round 14 (radius: 20) [09:27:40 -8522.793167] SLOW spr round 15 (radius: 5) [09:28:57 -8505.424839] SLOW spr round 16 (radius: 5) [09:30:07 -8505.424836] SLOW spr round 17 (radius: 10) [09:31:13 -8505.424836] SLOW spr round 18 (radius: 15) [09:32:36 -8505.424836] SLOW spr round 19 (radius: 20) [09:34:31 -8505.241058] SLOW spr round 20 (radius: 5) [09:35:48 -8505.241056] SLOW spr round 21 (radius: 10) [09:36:58 -8505.241056] SLOW spr round 22 (radius: 15) [09:38:20 -8505.241056] SLOW spr round 23 (radius: 20) [09:40:16 -8505.241056] SLOW spr round 24 (radius: 25) [09:42:41 -8494.950749] SLOW spr round 25 (radius: 5) [09:43:59 -8491.171683] SLOW spr round 26 (radius: 5) [09:45:11 -8473.081693] SLOW spr round 27 (radius: 5) [09:46:17 -8472.442203] SLOW spr round 28 (radius: 5) [09:47:22 -8472.441971] SLOW spr round 29 (radius: 10) [09:48:27 -8472.441970] SLOW spr round 30 (radius: 15) [09:49:52 -8472.441970] SLOW spr round 31 (radius: 20) [09:51:47 -8472.441970] SLOW spr round 32 (radius: 25) [09:54:12 -8471.571441] SLOW spr round 33 (radius: 5) [09:55:30 -8471.571441] SLOW spr round 34 (radius: 10) [09:56:41 -8471.571441] SLOW spr round 35 (radius: 15) [09:58:02 -8471.571441] SLOW spr round 36 (radius: 20) [10:00:00 -8471.571441] SLOW spr round 37 (radius: 25) [10:02:23 -8471.571441] Model parameter optimization (eps = 0.100000) [10:02:29] ML tree search #10, logLikelihood: -8471.099665 [10:02:29 -40326.627243] Initial branch length optimization [10:02:30 -35260.766052] Model parameter optimization (eps = 10.000000) [10:02:42 -34953.784162] AUTODETECT spr round 1 (radius: 5) [10:03:48 -26165.509524] AUTODETECT spr round 2 (radius: 10) [10:05:05 -15877.083258] AUTODETECT spr round 3 (radius: 15) [10:06:31 -12055.036340] AUTODETECT spr round 4 (radius: 20) [10:08:08 -10641.990982] AUTODETECT spr round 5 (radius: 25) [10:10:13 -10339.569308] SPR radius for FAST iterations: 25 (autodetect) [10:10:13 -10339.569308] Model parameter optimization (eps = 3.000000) [10:10:27 -10293.305401] FAST spr round 1 (radius: 25) [10:11:31 -8674.303180] FAST spr round 2 (radius: 25) [10:12:33 -8599.187083] FAST spr round 3 (radius: 25) [10:13:34 -8593.572021] FAST spr round 4 (radius: 25) [10:14:33 -8592.867299] FAST spr round 5 (radius: 25) [10:15:31 -8591.496376] FAST spr round 6 (radius: 25) [10:16:29 -8591.496357] Model parameter optimization (eps = 1.000000) [10:16:34 -8590.960264] SLOW spr round 1 (radius: 5) [10:17:41 -8588.139130] SLOW spr round 2 (radius: 5) [10:18:46 -8586.720699] SLOW spr round 3 (radius: 5) [10:19:50 -8586.720228] SLOW spr round 4 (radius: 10) [10:20:56 -8586.719927] SLOW spr round 5 (radius: 15) [10:22:27 -8563.622144] SLOW spr round 6 (radius: 5) [10:23:45 -8559.630822] SLOW spr round 7 (radius: 5) [10:24:55 -8559.630273] SLOW spr round 8 (radius: 10) [10:26:02 -8559.630242] SLOW spr round 9 (radius: 15) [10:27:31 -8559.330835] SLOW spr round 10 (radius: 5) [10:28:48 -8559.330693] SLOW spr round 11 (radius: 10) [10:29:59 -8557.713820] SLOW spr round 12 (radius: 5) [10:31:13 -8557.713812] SLOW spr round 13 (radius: 10) [10:32:21 -8557.713810] SLOW spr round 14 (radius: 15) [10:33:48 -8557.029956] SLOW spr round 15 (radius: 5) [10:35:05 -8557.029956] SLOW spr round 16 (radius: 10) [10:36:16 -8557.029955] SLOW spr round 17 (radius: 15) [10:37:42 -8557.029954] SLOW spr round 18 (radius: 20) [10:39:56 -8527.553503] SLOW spr round 19 (radius: 5) [10:41:14 -8524.768826] SLOW spr round 20 (radius: 5) [10:42:25 -8524.768667] SLOW spr round 21 (radius: 10) [10:43:32 -8524.768666] SLOW spr round 22 (radius: 15) [10:44:59 -8524.768666] SLOW spr round 23 (radius: 20) [10:47:10 -8524.768666] SLOW spr round 24 (radius: 25) [10:50:03 -8482.783740] SLOW spr round 25 (radius: 5) [10:51:22 -8467.550662] SLOW spr round 26 (radius: 5) [10:52:34 -8457.752958] SLOW spr round 27 (radius: 5) [10:53:40 -8457.752958] SLOW spr round 28 (radius: 10) [10:54:46 -8457.752958] SLOW spr round 29 (radius: 15) [10:56:14 -8457.752958] SLOW spr round 30 (radius: 20) [10:58:23 -8457.752958] SLOW spr round 31 (radius: 25) [11:01:15 -8457.752958] Model parameter optimization (eps = 0.100000) [11:01:18] ML tree search #11, logLikelihood: -8457.706534 [11:01:18 -40056.824703] Initial branch length optimization [11:01:19 -35116.126185] Model parameter optimization (eps = 10.000000) [11:01:33 -34813.272141] AUTODETECT spr round 1 (radius: 5) [11:02:38 -26285.849759] AUTODETECT spr round 2 (radius: 10) [11:03:53 -17097.224045] AUTODETECT spr round 3 (radius: 15) [11:05:18 -12359.482584] AUTODETECT spr round 4 (radius: 20) [11:06:52 -11048.072674] AUTODETECT spr round 5 (radius: 25) [11:08:51 -10458.429801] SPR radius for FAST iterations: 25 (autodetect) [11:08:51 -10458.429801] Model parameter optimization (eps = 3.000000) [11:09:05 -10447.012406] FAST spr round 1 (radius: 25) [11:10:10 -8681.651204] FAST spr round 2 (radius: 25) [11:11:13 -8587.533988] FAST spr round 3 (radius: 25) [11:12:15 -8554.450024] FAST spr round 4 (radius: 25) [11:13:15 -8554.371227] Model parameter optimization (eps = 1.000000) [11:13:18 -8554.206218] SLOW spr round 1 (radius: 5) [11:14:25 -8552.556013] SLOW spr round 2 (radius: 5) [11:15:31 -8550.271203] SLOW spr round 3 (radius: 5) [11:16:36 -8550.271146] SLOW spr round 4 (radius: 10) [11:17:43 -8544.641251] SLOW spr round 5 (radius: 5) [11:18:58 -8544.641206] SLOW spr round 6 (radius: 10) [11:20:08 -8541.916757] SLOW spr round 7 (radius: 5) [11:21:22 -8541.916751] SLOW spr round 8 (radius: 10) [11:22:30 -8541.916749] SLOW spr round 9 (radius: 15) [11:23:55 -8541.916749] SLOW spr round 10 (radius: 20) [11:26:03 -8533.684504] SLOW spr round 11 (radius: 5) [11:27:23 -8527.723079] SLOW spr round 12 (radius: 5) [11:28:34 -8527.722821] SLOW spr round 13 (radius: 10) [11:29:41 -8527.722819] SLOW spr round 14 (radius: 15) [11:31:07 -8527.722818] SLOW spr round 15 (radius: 20) [11:33:13 -8526.216156] SLOW spr round 16 (radius: 5) [11:34:32 -8523.773738] SLOW spr round 17 (radius: 5) [11:35:43 -8523.773737] SLOW spr round 18 (radius: 10) [11:36:50 -8523.773737] SLOW spr round 19 (radius: 15) [11:38:16 -8523.773737] SLOW spr round 20 (radius: 20) [11:40:23 -8522.296038] SLOW spr round 21 (radius: 5) [11:41:42 -8521.082484] SLOW spr round 22 (radius: 5) [11:42:53 -8521.082183] SLOW spr round 23 (radius: 10) [11:44:01 -8519.783368] SLOW spr round 24 (radius: 5) [11:45:15 -8519.782185] SLOW spr round 25 (radius: 10) [11:46:24 -8519.781486] SLOW spr round 26 (radius: 15) [11:47:49 -8519.780962] SLOW spr round 27 (radius: 20) [11:49:59 -8519.761038] SLOW spr round 28 (radius: 25) [11:52:37 -8518.468503] SLOW spr round 29 (radius: 5) [11:53:55 -8518.458360] SLOW spr round 30 (radius: 10) [11:55:07 -8518.456430] SLOW spr round 31 (radius: 15) [11:56:33 -8518.131495] SLOW spr round 32 (radius: 5) [11:57:51 -8518.111643] SLOW spr round 33 (radius: 10) [11:59:03 -8518.111000] SLOW spr round 34 (radius: 15) [12:00:28 -8518.110932] SLOW spr round 35 (radius: 20) [12:02:45 -8518.110925] SLOW spr round 36 (radius: 25) [12:05:32 -8512.204217] SLOW spr round 37 (radius: 5) [12:06:50 -8512.204200] SLOW spr round 38 (radius: 10) [12:08:02 -8512.204200] SLOW spr round 39 (radius: 15) [12:09:27 -8512.204200] SLOW spr round 40 (radius: 20) [12:11:45 -8512.204200] SLOW spr round 41 (radius: 25) [12:14:32 -8512.204200] Model parameter optimization (eps = 0.100000) [12:14:37] ML tree search #12, logLikelihood: -8511.387629 [12:14:37 -40250.106497] Initial branch length optimization [12:14:37 -35203.492431] Model parameter optimization (eps = 10.000000) [12:14:55 -34927.274791] AUTODETECT spr round 1 (radius: 5) [12:16:01 -26283.792029] AUTODETECT spr round 2 (radius: 10) [12:17:17 -16914.425593] AUTODETECT spr round 3 (radius: 15) [12:18:46 -13038.003215] AUTODETECT spr round 4 (radius: 20) [12:20:24 -11216.476047] AUTODETECT spr round 5 (radius: 25) [12:22:17 -10916.685709] SPR radius for FAST iterations: 25 (autodetect) [12:22:17 -10916.685709] Model parameter optimization (eps = 3.000000) [12:22:32 -10865.453945] FAST spr round 1 (radius: 25) [12:23:38 -8871.628831] FAST spr round 2 (radius: 25) [12:24:40 -8625.643841] FAST spr round 3 (radius: 25) [12:25:42 -8574.350324] FAST spr round 4 (radius: 25) [12:26:42 -8573.769214] FAST spr round 5 (radius: 25) [12:27:41 -8573.742846] Model parameter optimization (eps = 1.000000) [12:27:49 -8567.216339] SLOW spr round 1 (radius: 5) [12:28:55 -8566.189125] SLOW spr round 2 (radius: 5) [12:30:01 -8566.188888] SLOW spr round 3 (radius: 10) [12:31:07 -8566.188836] SLOW spr round 4 (radius: 15) [12:32:38 -8556.960280] SLOW spr round 5 (radius: 5) [12:33:56 -8543.790993] SLOW spr round 6 (radius: 5) [12:35:08 -8537.825501] SLOW spr round 7 (radius: 5) [12:36:15 -8537.825484] SLOW spr round 8 (radius: 10) [12:37:22 -8530.715437] SLOW spr round 9 (radius: 5) [12:38:37 -8526.977704] SLOW spr round 10 (radius: 5) [12:39:46 -8526.977699] SLOW spr round 11 (radius: 10) [12:40:52 -8526.977699] SLOW spr round 12 (radius: 15) [12:42:19 -8526.311420] SLOW spr round 13 (radius: 5) [12:43:36 -8526.311415] SLOW spr round 14 (radius: 10) [12:44:48 -8525.157105] SLOW spr round 15 (radius: 5) [12:46:03 -8524.360516] SLOW spr round 16 (radius: 5) [12:47:11 -8524.360479] SLOW spr round 17 (radius: 10) [12:48:17 -8524.360479] SLOW spr round 18 (radius: 15) [12:49:44 -8524.360479] SLOW spr round 19 (radius: 20) [12:51:54 -8516.945689] SLOW spr round 20 (radius: 5) [12:53:13 -8515.658443] SLOW spr round 21 (radius: 5) [12:54:24 -8514.262599] SLOW spr round 22 (radius: 5) [12:55:31 -8514.262599] SLOW spr round 23 (radius: 10) [12:56:37 -8514.262599] SLOW spr round 24 (radius: 15) [12:58:03 -8514.262599] SLOW spr round 25 (radius: 20) [13:00:09 -8514.185165] SLOW spr round 26 (radius: 25) [13:02:58 -8503.703523] SLOW spr round 27 (radius: 5) [13:04:17 -8469.246509] SLOW spr round 28 (radius: 5) [13:05:28 -8469.246508] SLOW spr round 29 (radius: 10) [13:06:35 -8469.246508] SLOW spr round 30 (radius: 15) [13:07:58 -8469.246508] SLOW spr round 31 (radius: 20) [13:10:04 -8469.246508] SLOW spr round 32 (radius: 25) [13:12:51 -8469.246508] Model parameter optimization (eps = 0.100000) [13:12:56] ML tree search #13, logLikelihood: -8469.089706 [13:12:56 -40440.475594] Initial branch length optimization [13:12:57 -35357.757763] Model parameter optimization (eps = 10.000000) [13:13:14 -35087.798229] AUTODETECT spr round 1 (radius: 5) [13:14:19 -26890.364921] AUTODETECT spr round 2 (radius: 10) [13:15:37 -16787.130973] AUTODETECT spr round 3 (radius: 15) [13:17:03 -12314.079089] AUTODETECT spr round 4 (radius: 20) [13:18:36 -11161.052956] AUTODETECT spr round 5 (radius: 25) [13:20:31 -10699.712892] SPR radius for FAST iterations: 25 (autodetect) [13:20:31 -10699.712892] Model parameter optimization (eps = 3.000000) [13:20:51 -10664.745185] FAST spr round 1 (radius: 25) [13:21:56 -8961.019144] FAST spr round 2 (radius: 25) [13:22:58 -8814.754871] FAST spr round 3 (radius: 25) [13:23:58 -8807.930107] FAST spr round 4 (radius: 25) [13:24:56 -8807.930007] Model parameter optimization (eps = 1.000000) [13:25:02 -8807.628348] SLOW spr round 1 (radius: 5) [13:26:08 -8806.203177] SLOW spr round 2 (radius: 5) [13:27:14 -8806.200160] SLOW spr round 3 (radius: 10) [13:28:20 -8805.231992] SLOW spr round 4 (radius: 5) [13:29:33 -8805.231904] SLOW spr round 5 (radius: 10) [13:30:43 -8805.231886] SLOW spr round 6 (radius: 15) [13:32:08 -8795.574961] SLOW spr round 7 (radius: 5) [13:33:27 -8790.455502] SLOW spr round 8 (radius: 5) [13:34:37 -8790.455383] SLOW spr round 9 (radius: 10) [13:35:44 -8790.047710] SLOW spr round 10 (radius: 5) [13:36:57 -8790.047707] SLOW spr round 11 (radius: 10) [13:38:06 -8790.047707] SLOW spr round 12 (radius: 15) [13:39:29 -8790.047707] SLOW spr round 13 (radius: 20) [13:41:34 -8784.194429] SLOW spr round 14 (radius: 5) [13:42:51 -8784.194428] SLOW spr round 15 (radius: 10) [13:44:03 -8783.544142] SLOW spr round 16 (radius: 5) [13:45:16 -8783.522143] SLOW spr round 17 (radius: 10) [13:46:24 -8783.521945] SLOW spr round 18 (radius: 15) [13:47:48 -8783.521943] SLOW spr round 19 (radius: 20) [13:49:51 -8777.746355] SLOW spr round 20 (radius: 5) [13:51:11 -8761.074980] SLOW spr round 21 (radius: 5) [13:52:21 -8761.074930] SLOW spr round 22 (radius: 10) [13:53:28 -8761.074930] SLOW spr round 23 (radius: 15) [13:54:52 -8761.074930] SLOW spr round 24 (radius: 20) [13:56:55 -8759.928402] SLOW spr round 25 (radius: 5) [13:58:12 -8759.928402] SLOW spr round 26 (radius: 10) [13:59:24 -8759.928402] SLOW spr round 27 (radius: 15) [14:00:46 -8759.928402] SLOW spr round 28 (radius: 20) [14:02:52 -8759.805233] SLOW spr round 29 (radius: 5) [14:04:09 -8758.766320] SLOW spr round 30 (radius: 5) [14:05:20 -8758.766299] SLOW spr round 31 (radius: 10) [14:06:27 -8758.766299] SLOW spr round 32 (radius: 15) [14:07:51 -8758.766299] SLOW spr round 33 (radius: 20) [14:09:51 -8758.766299] SLOW spr round 34 (radius: 25) [14:12:23 -8743.119190] SLOW spr round 35 (radius: 5) [14:13:40 -8734.435522] SLOW spr round 36 (radius: 5) [14:14:51 -8734.435522] SLOW spr round 37 (radius: 10) [14:15:59 -8734.435522] SLOW spr round 38 (radius: 15) [14:17:23 -8734.435522] SLOW spr round 39 (radius: 20) [14:19:23 -8734.435522] SLOW spr round 40 (radius: 25) [14:21:54 -8734.435522] Model parameter optimization (eps = 0.100000) [14:21:58] ML tree search #14, logLikelihood: -8734.195891 [14:21:58 -40282.302961] Initial branch length optimization [14:21:59 -35245.040220] Model parameter optimization (eps = 10.000000) [14:22:14 -34896.306075] AUTODETECT spr round 1 (radius: 5) [14:23:19 -26314.651201] AUTODETECT spr round 2 (radius: 10) [14:24:33 -17160.773670] AUTODETECT spr round 3 (radius: 15) [14:25:53 -12529.131952] AUTODETECT spr round 4 (radius: 20) [14:27:20 -10853.494341] AUTODETECT spr round 5 (radius: 25) [14:29:07 -10542.817170] SPR radius for FAST iterations: 25 (autodetect) [14:29:07 -10542.817170] Model parameter optimization (eps = 3.000000) [14:29:21 -10503.379698] FAST spr round 1 (radius: 25) [14:30:29 -8771.503519] FAST spr round 2 (radius: 25) [14:31:31 -8550.775880] FAST spr round 3 (radius: 25) [14:32:32 -8525.317540] FAST spr round 4 (radius: 25) [14:33:31 -8523.567491] FAST spr round 5 (radius: 25) [14:34:28 -8523.567306] Model parameter optimization (eps = 1.000000) [14:34:39 -8521.285271] SLOW spr round 1 (radius: 5) [14:35:45 -8519.213514] SLOW spr round 2 (radius: 5) [14:36:48 -8519.213476] SLOW spr round 3 (radius: 10) [14:37:55 -8514.866483] SLOW spr round 4 (radius: 5) [14:39:10 -8508.605013] SLOW spr round 5 (radius: 5) [14:40:20 -8506.652443] SLOW spr round 6 (radius: 5) [14:41:25 -8506.151639] SLOW spr round 7 (radius: 5) [14:42:28 -8506.151612] SLOW spr round 8 (radius: 10) [14:43:34 -8505.267909] SLOW spr round 9 (radius: 5) [14:44:49 -8505.266237] SLOW spr round 10 (radius: 10) [14:45:58 -8505.196519] SLOW spr round 11 (radius: 15) [14:47:24 -8501.265005] SLOW spr round 12 (radius: 5) [14:48:41 -8501.205719] SLOW spr round 13 (radius: 10) [14:49:51 -8501.205716] SLOW spr round 14 (radius: 15) [14:51:16 -8501.205716] SLOW spr round 15 (radius: 20) [14:53:38 -8501.014508] SLOW spr round 16 (radius: 5) [14:54:54 -8500.752896] SLOW spr round 17 (radius: 5) [14:56:05 -8500.752872] SLOW spr round 18 (radius: 10) [14:57:11 -8500.752872] SLOW spr round 19 (radius: 15) [14:58:39 -8500.688509] SLOW spr round 20 (radius: 20) [15:01:02 -8497.618560] SLOW spr round 21 (radius: 5) [15:02:21 -8446.990897] SLOW spr round 22 (radius: 5) [15:03:31 -8441.415806] SLOW spr round 23 (radius: 5) [15:04:36 -8441.415806] SLOW spr round 24 (radius: 10) [15:05:42 -8441.415806] SLOW spr round 25 (radius: 15) [15:07:11 -8441.415806] SLOW spr round 26 (radius: 20) [15:09:31 -8441.415806] SLOW spr round 27 (radius: 25) [15:12:37 -8441.415806] Model parameter optimization (eps = 0.100000) [15:12:43] ML tree search #15, logLikelihood: -8441.161787 [15:12:43 -40362.268816] Initial branch length optimization [15:12:44 -35310.765255] Model parameter optimization (eps = 10.000000) [15:13:00 -34970.980731] AUTODETECT spr round 1 (radius: 5) [15:14:04 -26252.257625] AUTODETECT spr round 2 (radius: 10) [15:15:24 -16410.027286] AUTODETECT spr round 3 (radius: 15) [15:16:55 -12282.667286] AUTODETECT spr round 4 (radius: 20) [15:18:35 -11057.581369] AUTODETECT spr round 5 (radius: 25) [15:20:28 -10603.280508] SPR radius for FAST iterations: 25 (autodetect) [15:20:28 -10603.280508] Model parameter optimization (eps = 3.000000) [15:20:45 -10567.975965] FAST spr round 1 (radius: 25) [15:21:51 -8727.531570] FAST spr round 2 (radius: 25) [15:22:54 -8592.257953] FAST spr round 3 (radius: 25) [15:23:54 -8580.476271] FAST spr round 4 (radius: 25) [15:24:53 -8573.408653] FAST spr round 5 (radius: 25) [15:25:50 -8573.408640] Model parameter optimization (eps = 1.000000) [15:25:55 -8572.543396] SLOW spr round 1 (radius: 5) [15:27:00 -8572.205175] SLOW spr round 2 (radius: 5) [15:28:03 -8572.205157] SLOW spr round 3 (radius: 10) [15:29:09 -8569.298535] SLOW spr round 4 (radius: 5) [15:30:23 -8568.244095] SLOW spr round 5 (radius: 5) [15:31:31 -8568.243960] SLOW spr round 6 (radius: 10) [15:32:38 -8567.054941] SLOW spr round 7 (radius: 5) [15:33:53 -8567.052500] SLOW spr round 8 (radius: 10) [15:35:02 -8566.074437] SLOW spr round 9 (radius: 5) [15:36:15 -8566.073780] SLOW spr round 10 (radius: 10) [15:37:23 -8566.073490] SLOW spr round 11 (radius: 15) [15:38:47 -8537.654246] SLOW spr round 12 (radius: 5) [15:40:04 -8516.347477] SLOW spr round 13 (radius: 5) [15:41:15 -8509.337068] SLOW spr round 14 (radius: 5) [15:42:22 -8505.982937] SLOW spr round 15 (radius: 5) [15:43:25 -8505.982812] SLOW spr round 16 (radius: 10) [15:44:30 -8505.982793] SLOW spr round 17 (radius: 15) [15:45:54 -8505.631884] SLOW spr round 18 (radius: 5) [15:47:10 -8505.631875] SLOW spr round 19 (radius: 10) [15:48:21 -8504.808575] SLOW spr round 20 (radius: 5) [15:49:33 -8504.808547] SLOW spr round 21 (radius: 10) [15:50:41 -8504.808544] SLOW spr round 22 (radius: 15) [15:52:03 -8504.808542] SLOW spr round 23 (radius: 20) [15:54:03 -8502.119681] SLOW spr round 24 (radius: 5) [15:55:20 -8502.119679] SLOW spr round 25 (radius: 10) [15:56:30 -8502.119678] SLOW spr round 26 (radius: 15) [15:57:52 -8502.119678] SLOW spr round 27 (radius: 20) [15:59:53 -8501.188478] SLOW spr round 28 (radius: 5) [16:01:10 -8501.188476] SLOW spr round 29 (radius: 10) [16:02:21 -8501.188476] SLOW spr round 30 (radius: 15) [16:03:43 -8501.188476] SLOW spr round 31 (radius: 20) [16:05:45 -8500.963670] SLOW spr round 32 (radius: 5) [16:07:03 -8496.794497] SLOW spr round 33 (radius: 5) [16:08:14 -8496.794335] SLOW spr round 34 (radius: 10) [16:09:20 -8496.794333] SLOW spr round 35 (radius: 15) [16:10:44 -8496.794333] SLOW spr round 36 (radius: 20) [16:12:46 -8496.794333] SLOW spr round 37 (radius: 25) [16:15:12 -8482.006610] SLOW spr round 38 (radius: 5) [16:16:32 -8466.700456] SLOW spr round 39 (radius: 5) [16:17:42 -8466.700438] SLOW spr round 40 (radius: 10) [16:18:49 -8466.700438] SLOW spr round 41 (radius: 15) [16:20:13 -8463.865287] SLOW spr round 42 (radius: 5) [16:21:30 -8463.275603] SLOW spr round 43 (radius: 5) [16:22:40 -8463.275583] SLOW spr round 44 (radius: 10) [16:23:46 -8463.275583] SLOW spr round 45 (radius: 15) [16:25:10 -8463.275583] SLOW spr round 46 (radius: 20) [16:27:13 -8463.275583] SLOW spr round 47 (radius: 25) [16:29:40 -8462.109193] SLOW spr round 48 (radius: 5) [16:30:57 -8462.109188] SLOW spr round 49 (radius: 10) [16:32:08 -8462.109187] SLOW spr round 50 (radius: 15) [16:33:30 -8462.109187] SLOW spr round 51 (radius: 20) [16:35:36 -8462.109187] SLOW spr round 52 (radius: 25) [16:38:03 -8462.109187] Model parameter optimization (eps = 0.100000) [16:38:09] ML tree search #16, logLikelihood: -8461.557283 [16:38:09 -40380.796741] Initial branch length optimization [16:38:10 -35399.121724] Model parameter optimization (eps = 10.000000) [16:38:26 -35048.340267] AUTODETECT spr round 1 (radius: 5) [16:39:31 -26834.557017] AUTODETECT spr round 2 (radius: 10) [16:40:47 -17798.918512] AUTODETECT spr round 3 (radius: 15) [16:42:15 -12801.485589] AUTODETECT spr round 4 (radius: 20) [16:43:51 -11289.439491] AUTODETECT spr round 5 (radius: 25) [16:45:48 -10647.492162] SPR radius for FAST iterations: 25 (autodetect) [16:45:48 -10647.492162] Model parameter optimization (eps = 3.000000) [16:46:03 -10597.770920] FAST spr round 1 (radius: 25) [16:47:08 -8655.208843] FAST spr round 2 (radius: 25) [16:48:10 -8534.910043] FAST spr round 3 (radius: 25) [16:49:10 -8513.269267] FAST spr round 4 (radius: 25) [16:50:08 -8513.156063] FAST spr round 5 (radius: 25) [16:51:06 -8513.156057] Model parameter optimization (eps = 1.000000) [16:51:12 -8512.744360] SLOW spr round 1 (radius: 5) [16:52:18 -8512.733029] SLOW spr round 2 (radius: 10) [16:53:24 -8512.051253] SLOW spr round 3 (radius: 5) [16:54:40 -8506.983985] SLOW spr round 4 (radius: 5) [16:55:50 -8505.024946] SLOW spr round 5 (radius: 5) [16:56:56 -8503.692301] SLOW spr round 6 (radius: 5) [16:58:01 -8503.151109] SLOW spr round 7 (radius: 5) [16:59:05 -8503.150928] SLOW spr round 8 (radius: 10) [17:00:10 -8503.150859] SLOW spr round 9 (radius: 15) [17:01:40 -8481.926178] SLOW spr round 10 (radius: 5) [17:02:59 -8476.379007] SLOW spr round 11 (radius: 5) [17:04:09 -8476.378957] SLOW spr round 12 (radius: 10) [17:05:17 -8474.275771] SLOW spr round 13 (radius: 5) [17:06:31 -8474.106860] SLOW spr round 14 (radius: 5) [17:07:39 -8474.106855] SLOW spr round 15 (radius: 10) [17:08:45 -8474.106850] SLOW spr round 16 (radius: 15) [17:10:13 -8474.024132] SLOW spr round 17 (radius: 20) [17:12:30 -8472.584123] SLOW spr round 18 (radius: 5) [17:13:48 -8472.553997] SLOW spr round 19 (radius: 10) [17:14:59 -8472.553995] SLOW spr round 20 (radius: 15) [17:16:25 -8472.553994] SLOW spr round 21 (radius: 20) [17:18:50 -8472.553994] SLOW spr round 22 (radius: 25) [17:21:56 -8471.259325] SLOW spr round 23 (radius: 5) [17:23:13 -8471.259271] SLOW spr round 24 (radius: 10) [17:24:24 -8468.377374] SLOW spr round 25 (radius: 5) [17:25:39 -8468.329230] SLOW spr round 26 (radius: 10) [17:26:47 -8468.328883] SLOW spr round 27 (radius: 15) [17:28:13 -8468.328880] SLOW spr round 28 (radius: 20) [17:30:34 -8468.328880] SLOW spr round 29 (radius: 25) [17:33:37 -8468.328880] Model parameter optimization (eps = 0.100000) [17:33:50] ML tree search #17, logLikelihood: -8466.614719 [17:33:50 -40467.595772] Initial branch length optimization [17:33:51 -35430.319634] Model parameter optimization (eps = 10.000000) [17:34:04 -35080.394998] AUTODETECT spr round 1 (radius: 5) [17:35:08 -26709.523207] AUTODETECT spr round 2 (radius: 10) [17:36:23 -16658.627483] AUTODETECT spr round 3 (radius: 15) [17:37:50 -12696.690964] AUTODETECT spr round 4 (radius: 20) [17:39:35 -10818.760811] AUTODETECT spr round 5 (radius: 25) [17:41:33 -10593.550309] SPR radius for FAST iterations: 25 (autodetect) [17:41:33 -10593.550309] Model parameter optimization (eps = 3.000000) [17:41:47 -10579.991448] FAST spr round 1 (radius: 25) [17:42:52 -8810.591855] FAST spr round 2 (radius: 25) [17:43:54 -8581.531251] FAST spr round 3 (radius: 25) [17:44:54 -8569.409802] FAST spr round 4 (radius: 25) [17:45:53 -8543.062132] FAST spr round 5 (radius: 25) [17:46:53 -8521.202185] FAST spr round 6 (radius: 25) [17:47:51 -8517.674024] FAST spr round 7 (radius: 25) [17:48:49 -8517.673934] Model parameter optimization (eps = 1.000000) [17:48:53 -8517.271244] SLOW spr round 1 (radius: 5) [17:49:59 -8514.694881] SLOW spr round 2 (radius: 5) [17:51:02 -8514.694813] SLOW spr round 3 (radius: 10) [17:52:08 -8514.694789] SLOW spr round 4 (radius: 15) [17:53:40 -8510.248785] SLOW spr round 5 (radius: 5) [17:54:57 -8506.713774] SLOW spr round 6 (radius: 5) [17:56:07 -8506.713772] SLOW spr round 7 (radius: 10) [17:57:14 -8498.361750] SLOW spr round 8 (radius: 5) [17:58:28 -8498.361723] SLOW spr round 9 (radius: 10) [17:59:37 -8498.361723] SLOW spr round 10 (radius: 15) [18:01:04 -8498.361723] SLOW spr round 11 (radius: 20) [18:03:34 -8496.027121] SLOW spr round 12 (radius: 5) [18:04:53 -8492.658935] SLOW spr round 13 (radius: 5) [18:06:04 -8492.658629] SLOW spr round 14 (radius: 10) [18:07:10 -8492.658618] SLOW spr round 15 (radius: 15) [18:08:38 -8492.658617] SLOW spr round 16 (radius: 20) [18:10:59 -8491.043721] SLOW spr round 17 (radius: 5) [18:12:16 -8489.863149] SLOW spr round 18 (radius: 5) [18:13:27 -8489.863123] SLOW spr round 19 (radius: 10) [18:14:33 -8489.863123] SLOW spr round 20 (radius: 15) [18:16:01 -8489.863123] SLOW spr round 21 (radius: 20) [18:18:21 -8489.863123] SLOW spr round 22 (radius: 25) [18:21:26 -8489.604930] SLOW spr round 23 (radius: 5) [18:22:44 -8489.604930] SLOW spr round 24 (radius: 10) [18:23:55 -8489.604930] SLOW spr round 25 (radius: 15) [18:25:20 -8489.604930] SLOW spr round 26 (radius: 20) [18:27:44 -8489.604930] SLOW spr round 27 (radius: 25) [18:30:48 -8489.604930] Model parameter optimization (eps = 0.100000) [18:30:51] ML tree search #18, logLikelihood: -8489.578661 [18:30:51 -40111.974821] Initial branch length optimization [18:30:52 -35091.602916] Model parameter optimization (eps = 10.000000) [18:31:07 -34792.662690] AUTODETECT spr round 1 (radius: 5) [18:32:11 -26351.735536] AUTODETECT spr round 2 (radius: 10) [18:33:26 -16762.335889] AUTODETECT spr round 3 (radius: 15) [18:34:52 -11880.713265] AUTODETECT spr round 4 (radius: 20) [18:36:28 -10752.102366] AUTODETECT spr round 5 (radius: 25) [18:38:18 -10539.530836] SPR radius for FAST iterations: 25 (autodetect) [18:38:18 -10539.530836] Model parameter optimization (eps = 3.000000) [18:38:27 -10528.551200] FAST spr round 1 (radius: 25) [18:39:33 -8899.433177] FAST spr round 2 (radius: 25) [18:40:36 -8729.926205] FAST spr round 3 (radius: 25) [18:41:35 -8719.593373] FAST spr round 4 (radius: 25) [18:42:34 -8716.952330] FAST spr round 5 (radius: 25) [18:43:31 -8716.951902] Model parameter optimization (eps = 1.000000) [18:43:39 -8714.777450] SLOW spr round 1 (radius: 5) [18:44:44 -8712.376426] SLOW spr round 2 (radius: 5) [18:45:49 -8712.376084] SLOW spr round 3 (radius: 10) [18:46:56 -8707.128760] SLOW spr round 4 (radius: 5) [18:48:11 -8705.642886] SLOW spr round 5 (radius: 5) [18:49:21 -8705.642775] SLOW spr round 6 (radius: 10) [18:50:28 -8705.642747] SLOW spr round 7 (radius: 15) [18:51:57 -8631.393089] SLOW spr round 8 (radius: 5) [18:53:16 -8584.640090] SLOW spr round 9 (radius: 5) [18:54:28 -8582.968615] SLOW spr round 10 (radius: 5) [18:55:35 -8578.673298] SLOW spr round 11 (radius: 5) [18:56:39 -8578.673282] SLOW spr round 12 (radius: 10) [18:57:45 -8577.377766] SLOW spr round 13 (radius: 5) [18:59:00 -8573.217109] SLOW spr round 14 (radius: 5) [19:00:09 -8573.217048] SLOW spr round 15 (radius: 10) [19:01:15 -8573.198300] SLOW spr round 16 (radius: 15) [19:02:42 -8565.116575] SLOW spr round 17 (radius: 5) [19:04:00 -8556.118885] SLOW spr round 18 (radius: 5) [19:05:11 -8500.877482] SLOW spr round 19 (radius: 5) [19:06:16 -8500.877448] SLOW spr round 20 (radius: 10) [19:07:22 -8500.877446] SLOW spr round 21 (radius: 15) [19:08:49 -8500.068430] SLOW spr round 22 (radius: 5) [19:10:06 -8499.104833] SLOW spr round 23 (radius: 5) [19:11:16 -8499.104830] SLOW spr round 24 (radius: 10) [19:12:22 -8499.104828] SLOW spr round 25 (radius: 15) [19:13:47 -8499.104828] SLOW spr round 26 (radius: 20) [19:15:58 -8498.595990] SLOW spr round 27 (radius: 5) [19:17:15 -8498.595768] SLOW spr round 28 (radius: 10) [19:18:25 -8494.596355] SLOW spr round 29 (radius: 5) [19:19:38 -8494.596343] SLOW spr round 30 (radius: 10) [19:20:45 -8494.596343] SLOW spr round 31 (radius: 15) [19:22:09 -8494.596343] SLOW spr round 32 (radius: 20) [19:24:18 -8494.596343] SLOW spr round 33 (radius: 25) [19:27:09 -8491.356948] SLOW spr round 34 (radius: 5) [19:28:26 -8491.356944] SLOW spr round 35 (radius: 10) [19:29:36 -8491.356944] SLOW spr round 36 (radius: 15) [19:30:59 -8491.356944] SLOW spr round 37 (radius: 20) [19:33:10 -8491.356944] SLOW spr round 38 (radius: 25) [19:35:59 -8491.356944] Model parameter optimization (eps = 0.100000) [19:36:02] ML tree search #19, logLikelihood: -8491.332581 [19:36:02 -40267.251580] Initial branch length optimization [19:36:03 -35242.089752] Model parameter optimization (eps = 10.000000) [19:36:19 -34936.642749] AUTODETECT spr round 1 (radius: 5) [19:37:24 -26553.456431] AUTODETECT spr round 2 (radius: 10) [19:38:38 -17893.560538] AUTODETECT spr round 3 (radius: 15) [19:40:06 -13025.719504] AUTODETECT spr round 4 (radius: 20) [19:41:43 -11184.455054] AUTODETECT spr round 5 (radius: 25) [19:43:33 -10700.018872] SPR radius for FAST iterations: 25 (autodetect) [19:43:33 -10700.018872] Model parameter optimization (eps = 3.000000) [19:43:42 -10683.699931] FAST spr round 1 (radius: 25) [19:44:48 -8839.495678] FAST spr round 2 (radius: 25) [19:45:51 -8643.174837] FAST spr round 3 (radius: 25) [19:46:51 -8609.883730] FAST spr round 4 (radius: 25) [19:47:50 -8609.874713] Model parameter optimization (eps = 1.000000) [19:48:01 -8603.937595] SLOW spr round 1 (radius: 5) [19:49:08 -8601.098004] SLOW spr round 2 (radius: 5) [19:50:13 -8601.080294] SLOW spr round 3 (radius: 10) [19:51:18 -8601.080041] SLOW spr round 4 (radius: 15) [19:52:46 -8592.144883] SLOW spr round 5 (radius: 5) [19:54:03 -8577.886588] SLOW spr round 6 (radius: 5) [19:55:14 -8577.886497] SLOW spr round 7 (radius: 10) [19:56:22 -8576.473956] SLOW spr round 8 (radius: 5) [19:57:38 -8576.463040] SLOW spr round 9 (radius: 10) [19:58:47 -8576.463033] SLOW spr round 10 (radius: 15) [20:00:12 -8565.757929] SLOW spr round 11 (radius: 5) [20:01:29 -8564.363661] SLOW spr round 12 (radius: 5) [20:02:40 -8560.821505] SLOW spr round 13 (radius: 5) [20:03:46 -8560.821347] SLOW spr round 14 (radius: 10) [20:04:52 -8560.821253] SLOW spr round 15 (radius: 15) [20:06:18 -8560.380613] SLOW spr round 16 (radius: 5) [20:07:35 -8560.380592] SLOW spr round 17 (radius: 10) [20:08:45 -8559.059087] SLOW spr round 18 (radius: 5) [20:09:58 -8559.057519] SLOW spr round 19 (radius: 10) [20:11:06 -8559.057473] SLOW spr round 20 (radius: 15) [20:12:31 -8559.057471] SLOW spr round 21 (radius: 20) [20:14:39 -8551.114389] SLOW spr round 22 (radius: 5) [20:15:57 -8493.901360] SLOW spr round 23 (radius: 5) [20:17:08 -8490.823793] SLOW spr round 24 (radius: 5) [20:18:15 -8490.823721] SLOW spr round 25 (radius: 10) [20:19:21 -8490.823708] SLOW spr round 26 (radius: 15) [20:20:47 -8490.823707] SLOW spr round 27 (radius: 20) [20:22:49 -8490.823707] SLOW spr round 28 (radius: 25) [20:25:23 -8490.823707] Model parameter optimization (eps = 0.100000) [20:25:29] ML tree search #20, logLikelihood: -8490.572876 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.371359,0.501239) (0.228606,0.736777) (0.281416,1.237643) (0.118619,2.504963) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -8434.432529 AIC score: 20870.865057 / AICc score: 8032874.865057 / BIC score: 23983.116528 Free parameters (model + branch lengths): 2001 WARNING: Number of free parameters (K=2001) is larger than alignment size (n=35). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A8MT65/3_mltree/A8MT65.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A8MT65/3_mltree/A8MT65.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A8MT65/3_mltree/A8MT65.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A8MT65/3_mltree/A8MT65.raxml.log Analysis started: 16-Jul-2021 00:29:48 / finished: 16-Jul-2021 20:55:18 Elapsed time: 73529.800 seconds