RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 16:40:01 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/2_msa/A6NNZ2_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/3_mltree/A6NNZ2.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/4_raxmlng_ancestral/A6NNZ2 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626097201 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/2_msa/A6NNZ2_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 444 sites WARNING: Sequences tr_B4QE31_B4QE31_DROSI_7240 and sp_Q24560_TBB1_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QE31_B4QE31_DROSI_7240 and tr_B4J625_B4J625_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4QE31_B4QE31_DROSI_7240 and tr_B4HPG7_B4HPG7_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QE31_B4QE31_DROSI_7240 and tr_B5DUR1_B5DUR1_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QE31_B4QE31_DROSI_7240 and tr_B4MRR0_B4MRR0_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QE31_B4QE31_DROSI_7240 and tr_B3MGF8_B3MGF8_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QE31_B4QE31_DROSI_7240 and tr_B4GIN0_B4GIN0_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4QE31_B4QE31_DROSI_7240 and tr_B4LNW8_B4LNW8_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QE31_B4QE31_DROSI_7240 and tr_B4KME5_B4KME5_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QE31_B4QE31_DROSI_7240 and tr_A0A0M4EEV8_A0A0M4EEV8_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QE31_B4QE31_DROSI_7240 and tr_A0A1W4VI24_A0A1W4VI24_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4QWM7_B4QWM7_DROSI_7240 and sp_P61857_TBB2_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QWM7_B4QWM7_DROSI_7240 and tr_B4JEL1_B4JEL1_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4QWM7_B4QWM7_DROSI_7240 and tr_B4HKE0_B4HKE0_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QWM7_B4QWM7_DROSI_7240 and tr_Q29BM0_Q29BM0_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QWM7_B4QWM7_DROSI_7240 and tr_B4N8W0_B4N8W0_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QWM7_B4QWM7_DROSI_7240 and tr_B3M059_B3M059_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QWM7_B4QWM7_DROSI_7240 and tr_B4LW18_B4LW18_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QWM7_B4QWM7_DROSI_7240 and tr_B4K4Z6_B4K4Z6_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QWM7_B4QWM7_DROSI_7240 and tr_A0A0L0CLP5_A0A0L0CLP5_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4QWM7_B4QWM7_DROSI_7240 and tr_A0A0M4EPH2_A0A0M4EPH2_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QWM7_B4QWM7_DROSI_7240 and tr_A0A1W4VQL1_A0A1W4VQL1_DROFC_30025 are exactly identical! WARNING: Sequences tr_E9GER1_E9GER1_DAPPU_6669 and tr_A0A0P5E5N2_A0A0P5E5N2_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E9HEX5_E9HEX5_DAPPU_6669 and tr_A0A162PE16_A0A162PE16_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E2AQX7_E2AQX7_CAMFO_104421 and tr_A0A087ZYZ1_A0A087ZYZ1_APIME_7460 are exactly identical! WARNING: Sequences tr_E2AQX7_E2AQX7_CAMFO_104421 and tr_A0A158NYQ8_A0A158NYQ8_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AQX7_E2AQX7_CAMFO_104421 and tr_F4WFR2_F4WFR2_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AQX7_E2AQX7_CAMFO_104421 and tr_A0A026WMP0_A0A026WMP0_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2AQX7_E2AQX7_CAMFO_104421 and tr_A0A195B1J3_A0A195B1J3_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2AQX7_E2AQX7_CAMFO_104421 and tr_A0A2A3EFH0_A0A2A3EFH0_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A0R4IPH2_A0A0R4IPH2_DANRE_7955 and tr_A0A2I4BQZ9_A0A2I4BQZ9_9TELE_52670 are exactly identical! WARNING: Sequences tr_F1R4K1_F1R4K1_DANRE_7955 and tr_M4A957_M4A957_XIPMA_8083 are exactly identical! WARNING: Sequences tr_F1R4K1_F1R4K1_DANRE_7955 and tr_I3J0U0_I3J0U0_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q6IQJ2_Q6IQJ2_DANRE_7955 and tr_A0A2D0QD65_A0A2D0QD65_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q6NW90_Q6NW90_DANRE_7955 and tr_G3P572_G3P572_GASAC_69293 are exactly identical! WARNING: Sequences tr_Q6NW90_Q6NW90_DANRE_7955 and tr_A0A2U9AXP0_A0A2U9AXP0_SCOMX_52904 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and sp_P99024_TBB5_MOUSE_10090 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_G1R063_G1R063_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_G3HQP8_G3HQP8_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_G3SB76_G3SB76_GORGO_9595 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and sp_Q5R943_TBB5_PONAB_9601 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_E2QSF4_E2QSF4_CANLF_9615 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and sp_Q7JJU6_TBB5_PANTR_9598 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_F7F082_F7F082_MONDO_13616 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_F7E0H3_F7E0H3_HORSE_9796 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_W5PPT6_W5PPT6_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and sp_P69897_TBB5_RAT_10116 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_I3ND93_I3ND93_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A286XDY8_A0A286XDY8_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and sp_P07437_TBB5_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and sp_P69895_TBB5_MACMU_9544 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_G3W109_G3W109_SARHA_9305 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_U3FM57_U3FM57_CALJA_9483 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and sp_Q767L7_TBB5_PIG_9823 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and sp_Q2KJD0_TBB5_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_L5KK71_L5KK71_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_M3X7Z9_M3X7Z9_FELCA_9685 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A0D9R7E7_A0A0D9R7E7_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A151MZH9_A0A151MZH9_ALLMI_8496 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A1S3GEI3_A0A1S3GEI3_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A3Q0E0U9_A0A3Q0E0U9_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A1U7SI21_A0A1U7SI21_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A1U7R7I2_A0A1U7R7I2_MESAU_10036 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A1V4L0F2_A0A1V4L0F2_PATFA_372326 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A218U794_A0A218U794_9PASE_299123 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A2K5KT86_A0A2K5KT86_CERAT_9531 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A2K6E8N3_A0A2K6E8N3_MACNE_9545 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A2K5ZFW6_A0A2K5ZFW6_MANLE_9568 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A2U3V2D1_A0A2U3V2D1_TURTR_9739 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A2U3WJT7_A0A2U3WJT7_ODORO_9708 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A2Y9EAZ4_A0A2Y9EAZ4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A2Y9KB63_A0A2Y9KB63_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A2Y9MS78_A0A2Y9MS78_DELLE_9749 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A2Y9EP82_A0A2Y9EP82_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A384C9R0_A0A384C9R0_URSMA_29073 are exactly identical! WARNING: Sequences sp_P09244_TBB7_CHICK_9031 and tr_A0A384BFD0_A0A384BFD0_BALAS_310752 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and sp_Q9CWF2_TBB2B_MOUSE_10090 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_M3XN07_M3XN07_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_G1RKC0_G1RKC0_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_H2PHS4_H2PHS4_PONAB_9601 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_H9GPI3_H9GPI3_ANOCA_28377 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_G1T4J4_G1T4J4_RABIT_9986 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_E2RFJ7_E2RFJ7_CANLF_9615 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_F7CY85_F7CY85_HORSE_9796 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and sp_Q3KRE8_TBB2B_RAT_10116 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_I3NEP5_I3NEP5_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_H0XYW9_H0XYW9_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and sp_Q9BVA1_TBB2B_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_F7HTD6_F7HTD6_MACMU_9544 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_F7ER98_F7ER98_CALJA_9483 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_G1M785_G1M785_AILME_9646 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and sp_Q6B856_TBB2B_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A2I2UXF6_A0A2I2UXF6_FELCA_9685 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_U3KFA3_U3KFA3_FICAL_59894 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A2I3MS98_A0A2I3MS98_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A0D9R4H8_A0A0D9R4H8_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A2I0MXV7_A0A2I0MXV7_COLLI_8932 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A1S2ZNV2_A0A1S2ZNV2_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A1S3F7A6_A0A1S3F7A6_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A1U7RQG4_A0A1U7RQG4_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A218UCL8_A0A218UCL8_9PASE_299123 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A226MYX7_A0A226MYX7_CALSU_9009 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A226PY67_A0A226PY67_COLVI_9014 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A2K6ALP5_A0A2K6ALP5_MACNE_9545 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A2U3WI50_A0A2U3WI50_ODORO_9708 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A2U3XWB3_A0A2U3XWB3_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A2Y9E722_A0A2Y9E722_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A2Y9KQC1_A0A2Y9KQC1_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P32882_TBB2_CHICK_9031 and tr_A0A2Y9P876_A0A2Y9P876_DELLE_9749 are exactly identical! WARNING: Sequences tr_Q4QBZ6_Q4QBZ6_LEIMA_5664 and tr_A4HTR0_A4HTR0_LEIIN_5671 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_L7N0I7_L7N0I7_CANLF_9615 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_F6WYK8_F6WYK8_MONDO_13616 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_I3MV11_I3MV11_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_H0WT50_H0WT50_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_H0VKM7_H0VKM7_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and sp_P68371_TBB4B_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A1D5QYU3_A0A1D5QYU3_MACMU_9544 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_G5BFZ1_G5BFZ1_HETGA_10181 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_G3W1X1_G3W1X1_SARHA_9305 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_H9KVN6_H9KVN6_CALJA_9483 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A287A217_A0A287A217_PIG_9823 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and sp_Q3MHM5_TBB4B_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_M3W0Z9_M3W0Z9_FELCA_9685 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A2I3LVF9_A0A2I3LVF9_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A0D9RVN0_A0A0D9RVN0_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A1S2ZMB5_A0A1S2ZMB5_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A1U7R1I6_A0A1U7R1I6_MESAU_10036 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A2K5ML20_A0A2K5ML20_CERAT_9531 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A2K6D1F2_A0A2K6D1F2_MACNE_9545 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A2U3ZYH3_A0A2U3ZYH3_ODORO_9708 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A2U3Y1C3_A0A2U3Y1C3_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A2Y9JDB7_A0A2Y9JDB7_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A2Y9NLN4_A0A2Y9NLN4_DELLE_9749 are exactly identical! WARNING: Sequences sp_P68372_TBB4B_MOUSE_10090 and tr_A0A2Y9SU63_A0A2Y9SU63_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_A0A2I3GDI7_A0A2I3GDI7_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_G1SY02_G1SY02_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_F7FFR0_F7FFR0_ORNAN_9258 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and sp_P85108_TBB2A_RAT_10116 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_I3N5B8_I3N5B8_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_A0A286XZ85_A0A286XZ85_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and sp_Q13885_TBB2A_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_G3THJ3_G3THJ3_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_F7ERQ2_F7ERQ2_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_A0A287A6Y9_A0A287A6Y9_PIG_9823 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_E1BJB1_E1BJB1_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_A0A3Q0EGA7_A0A3Q0EGA7_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_A0A1U7Q777_A0A1U7Q777_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_A0A2K5KWQ0_A0A2K5KWQ0_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_A0A2Y9E612_A0A2Y9E612_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_A0A2Y9KQ17_A0A2Y9KQ17_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_A0A2Y9PG91_A0A2Y9PG91_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q7TMM9_TBB2A_MOUSE_10090 and tr_A0A2Y9SFJ7_A0A2Y9SFJ7_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_G1PSQ1_G1PSQ1_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_G3HCL2_G3HCL2_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_G1U410_G1U410_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_E2RFV2_E2RFV2_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_G2HGK8_G2HGK8_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_B4F7C2_B4F7C2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_I3NB70_I3NB70_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_H0XHY1_H0XHY1_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and sp_P04350_TBB4A_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_A0A1D5QPK0_A0A1D5QPK0_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and sp_Q3ZBU7_TBB4A_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_A0A2I2UBF3_A0A2I2UBF3_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_A0A0D9RB46_A0A0D9RB46_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_A0A1U7QUU3_A0A1U7QUU3_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_A0A2K5LYP1_A0A2K5LYP1_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_A0A2K6D181_A0A2K6D181_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_A0A2R8ZJQ8_A0A2R8ZJQ8_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_A0A2U3ZBS0_A0A2U3ZBS0_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_A0A2Y9L602_A0A2Y9L602_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9D6F9_TBB4A_MOUSE_10090 and tr_A0A2Y9EUN4_A0A2Y9EUN4_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9ERD7_TBB3_MOUSE_10090 and tr_G3GRQ1_G3GRQ1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q9ERD7_TBB3_MOUSE_10090 and sp_Q4QRB4_TBB3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9ERD7_TBB3_MOUSE_10090 and tr_G5APH2_G5APH2_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9ERD7_TBB3_MOUSE_10090 and tr_F7IHJ4_F7IHJ4_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9ERD7_TBB3_MOUSE_10090 and tr_A0A1S3AA47_A0A1S3AA47_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q9ERD7_TBB3_MOUSE_10090 and tr_A0A1U7QRM6_A0A1U7QRM6_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9ERD7_TBB3_MOUSE_10090 and tr_A0A2Y9P7C7_A0A2Y9P7C7_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XZG8_M3XZG8_MUSPF_9669 and tr_A0A2U3WIB2_A0A2U3WIB2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XZG8_M3XZG8_MUSPF_9669 and tr_A0A2U3Z1V9_A0A2U3Z1V9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XZG8_M3XZG8_MUSPF_9669 and tr_A0A2Y9J051_A0A2Y9J051_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G3QIQ6_G3QIQ6_GORGO_9595 and tr_A0A2K5ZID7_A0A2K5ZID7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QLA2_G3QLA2_GORGO_9595 and sp_Q9BUF5_TBB6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RVT2_G3RVT2_GORGO_9595 and tr_A0A2R9A5J7_A0A2R9A5J7_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NRV0_H2NRV0_PONAB_9601 and tr_F2Z4P1_F2Z4P1_CANLF_9615 are exactly identical! WARNING: Sequences tr_H2NRV0_H2NRV0_PONAB_9601 and tr_I3MXL4_I3MXL4_ICTTR_43179 are exactly identical! WARNING: Sequences tr_H2NRV0_H2NRV0_PONAB_9601 and sp_Q13509_TBB3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NRV0_H2NRV0_PONAB_9601 and tr_G3SNF2_G3SNF2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_H2NRV0_H2NRV0_PONAB_9601 and sp_Q2T9S0_TBB3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_H2NRV0_H2NRV0_PONAB_9601 and tr_M3W868_M3W868_FELCA_9685 are exactly identical! WARNING: Sequences tr_H2NRV0_H2NRV0_PONAB_9601 and tr_A0A0D9S3A0_A0A0D9S3A0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2NRV0_H2NRV0_PONAB_9601 and tr_A0A2K6DT94_A0A2K6DT94_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2NRV0_H2NRV0_PONAB_9601 and tr_A0A2U3VCD5_A0A2U3VCD5_ODORO_9708 are exactly identical! WARNING: Sequences tr_H2NRV0_H2NRV0_PONAB_9601 and tr_A0A2Y9KCL6_A0A2Y9KCL6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2NVT3_H2NVT3_PONAB_9601 and tr_A0A0D9RY49_A0A0D9RY49_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2NVT3_H2NVT3_PONAB_9601 and tr_A0A2K5N0T0_A0A2K5N0T0_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2NVT3_H2NVT3_PONAB_9601 and tr_A0A2K6BP06_A0A2K6BP06_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1N9A2_G1N9A2_MELGA_9103 and tr_A0A226MQQ9_A0A226MQQ9_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1N9A2_G1N9A2_MELGA_9103 and tr_A0A226PIR7_A0A226PIR7_COLVI_9014 are exactly identical! WARNING: Sequences tr_L7MZZ9_L7MZZ9_ANOCA_28377 and tr_H3A7C7_H3A7C7_LATCH_7897 are exactly identical! WARNING: Sequences tr_G1U5S4_G1U5S4_RABIT_9986 and tr_U3JK46_U3JK46_FICAL_59894 are exactly identical! WARNING: Sequences sp_P41937_TBB4_CAEEL_6239 and tr_A0A2G5SLJ3_A0A2G5SLJ3_9PELO_1611254 are exactly identical! WARNING: Sequences sp_P52275_TBB2_CAEEL_6239 and tr_G0MBU6_G0MBU6_CAEBE_135651 are exactly identical! WARNING: Sequences sp_P52275_TBB2_CAEEL_6239 and tr_A0A1I7UMN4_A0A1I7UMN4_9PELO_1561998 are exactly identical! WARNING: Sequences tr_B9PYN1_B9PYN1_TOXGV_432359 and tr_A0A074T2I2_A0A074T2I2_HAMHA_99158 are exactly identical! WARNING: Sequences tr_B9Q1T8_B9Q1T8_TOXGV_432359 and tr_A0A074SWA8_A0A074SWA8_HAMHA_99158 are exactly identical! WARNING: Sequences tr_F7CB79_F7CB79_MONDO_13616 and tr_G3VXT3_G3VXT3_SARHA_9305 are exactly identical! WARNING: Sequences tr_G4ZQS2_G4ZQS2_PHYSP_1094619 and tr_H3GAD7_H3GAD7_PHYRM_164328 are exactly identical! WARNING: Sequences tr_G4ZQS2_G4ZQS2_PHYSP_1094619 and tr_D0MT13_D0MT13_PHYIT_403677 are exactly identical! WARNING: Sequences tr_G4ZQS2_G4ZQS2_PHYSP_1094619 and tr_W2PW38_W2PW38_PHYPN_761204 are exactly identical! WARNING: Sequences tr_G4ZQS2_G4ZQS2_PHYSP_1094619 and tr_A0A067CF72_A0A067CF72_SAPPC_695850 are exactly identical! WARNING: Sequences tr_G4ZQS2_G4ZQS2_PHYSP_1094619 and tr_T0QHX6_T0QHX6_9STRA_1156394 are exactly identical! WARNING: Sequences tr_G4ZQS2_G4ZQS2_PHYSP_1094619 and tr_A0A0W8D6D3_A0A0W8D6D3_PHYNI_4790 are exactly identical! WARNING: Sequences tr_G4ZQS2_G4ZQS2_PHYSP_1094619 and tr_W2III5_W2III5_PHYPR_4792 are exactly identical! WARNING: Sequences tr_G4ZQS2_G4ZQS2_PHYSP_1094619 and tr_A0A1V9YA79_A0A1V9YA79_9STRA_1202772 are exactly identical! WARNING: Sequences tr_G4ZQS2_G4ZQS2_PHYSP_1094619 and tr_A0A329SRP7_A0A329SRP7_9STRA_29920 are exactly identical! WARNING: Sequences tr_A0A3B5RCW5_A0A3B5RCW5_XIPMA_8083 and tr_I3JBJ3_I3JBJ3_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5RCW5_A0A3B5RCW5_XIPMA_8083 and tr_A0A2I4BG74_A0A2I4BG74_9TELE_52670 are exactly identical! WARNING: Sequences tr_M3ZNZ6_M3ZNZ6_XIPMA_8083 and tr_I3KWI4_I3KWI4_ORENI_8128 are exactly identical! WARNING: Sequences tr_M3ZNZ6_M3ZNZ6_XIPMA_8083 and tr_A0A087XL72_A0A087XL72_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A087ZYT5_A0A087ZYT5_APIME_7460 and tr_A0A2A3EFM3_A0A2A3EFM3_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A087ZYZ2_A0A087ZYZ2_APIME_7460 and tr_E2BTA8_E2BTA8_HARSA_610380 are exactly identical! WARNING: Sequences tr_A0A087ZYZ2_A0A087ZYZ2_APIME_7460 and tr_A0A0L7RDT4_A0A0L7RDT4_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A087ZYZ2_A0A087ZYZ2_APIME_7460 and tr_A0A2A3EE21_A0A2A3EE21_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NU14_A0A158NU14_ATTCE_12957 and tr_F4WK33_F4WK33_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NU14_A0A158NU14_ATTCE_12957 and tr_A0A151WZT5_A0A151WZT5_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NU14_A0A158NU14_ATTCE_12957 and tr_A0A195DJJ5_A0A195DJJ5_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NU14_A0A158NU14_ATTCE_12957 and tr_A0A151I4M5_A0A151I4M5_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NU14_A0A158NU14_ATTCE_12957 and tr_A0A195C7D6_A0A195C7D6_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A158NYR1_A0A158NYR1_ATTCE_12957 and tr_A0A195B1J1_A0A195B1J1_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NYR2_A0A158NYR2_ATTCE_12957 and tr_F4WFR3_F4WFR3_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NYR2_A0A158NYR2_ATTCE_12957 and tr_A0A151JRU6_A0A151JRU6_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NYR2_A0A158NYR2_ATTCE_12957 and tr_A0A195B1R8_A0A195B1R8_9HYME_520822 are exactly identical! WARNING: Sequences tr_I3K5M6_I3K5M6_ORENI_8128 and tr_A0A087YCB1_A0A087YCB1_POEFO_48698 are exactly identical! WARNING: Sequences tr_I3K5M6_I3K5M6_ORENI_8128 and tr_A0A2I4BMD7_A0A2I4BMD7_9TELE_52670 are exactly identical! WARNING: Sequences tr_I3KHY4_I3KHY4_ORENI_8128 and tr_A0A087YKS8_A0A087YKS8_POEFO_48698 are exactly identical! WARNING: Sequences tr_I3KHY4_I3KHY4_ORENI_8128 and tr_A0A2I4C9U5_A0A2I4C9U5_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A0E0ITA5_A0A0E0ITA5_ORYNI_4536 and tr_I1PG26_I1PG26_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0ITA5_A0A0E0ITA5_ORYNI_4536 and tr_A0A0E0D7P6_A0A0E0D7P6_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0ITA5_A0A0E0ITA5_ORYNI_4536 and tr_A0A0E0P223_A0A0E0P223_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0K0IVQ1_A0A0K0IVQ1_BRUMA_6279 and tr_A0A0N4TRB6_A0A0N4TRB6_BRUPA_6280 are exactly identical! WARNING: Sequences tr_E5SWF2_E5SWF2_TRISP_6334 and tr_A0A0V0S017_A0A0V0S017_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SWF2_E5SWF2_TRISP_6334 and tr_A0A0V1DDZ0_A0A0V1DDZ0_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SWF2_E5SWF2_TRISP_6334 and tr_A0A0V0W1N7_A0A0V0W1N7_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SWF2_E5SWF2_TRISP_6334 and tr_A0A0V0VMW0_A0A0V0VMW0_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SWF2_E5SWF2_TRISP_6334 and tr_A0A0V0Z998_A0A0V0Z998_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SWF2_E5SWF2_TRISP_6334 and tr_A0A0V0XY58_A0A0V0XY58_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SWF2_E5SWF2_TRISP_6334 and tr_A0A0V1MPJ4_A0A0V1MPJ4_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SWF2_E5SWF2_TRISP_6334 and tr_A0A0V1PB54_A0A0V1PB54_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SWF2_E5SWF2_TRISP_6334 and tr_A0A0V1HJZ9_A0A0V1HJZ9_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5SWF2_E5SWF2_TRISP_6334 and tr_A0A0V0TC92_A0A0V0TC92_9BILA_144512 are exactly identical! WARNING: Sequences tr_A2XMI9_A2XMI9_ORYSI_39946 and sp_P37832_TBB7_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_Q7PSI4_Q7PSI4_ANOGA_7165 and tr_A0A084WAZ7_A0A084WAZ7_ANOSI_74873 are exactly identical! WARNING: Sequences tr_A0A212ETB0_A0A212ETB0_DANPL_278856 and tr_A0A0N0PBJ8_A0A0N0PBJ8_PAPMA_76193 are exactly identical! WARNING: Sequences tr_A0A212ETB0_A0A212ETB0_DANPL_278856 and tr_A0A2A4JTH9_A0A2A4JTH9_HELVI_7102 are exactly identical! WARNING: Sequences tr_F4NUL6_F4NUL6_BATDJ_684364 and tr_A0A177W8I6_A0A177W8I6_BATDE_403673 are exactly identical! WARNING: Sequences tr_D6WSV2_D6WSV2_TRICA_7070 and tr_A0A067R568_A0A067R568_ZOONE_136037 are exactly identical! WARNING: Sequences tr_K7FSS2_K7FSS2_PELSI_13735 and tr_G3T969_G3T969_LOXAF_9785 are exactly identical! WARNING: Sequences tr_K7FTJ8_K7FTJ8_PELSI_13735 and tr_G3WMM3_G3WMM3_SARHA_9305 are exactly identical! WARNING: Sequences tr_K7FTJ8_K7FTJ8_PELSI_13735 and tr_A0A0D9R4H6_A0A0D9R4H6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_K7FTJ8_K7FTJ8_PELSI_13735 and tr_A0A2I0MXU3_A0A2I0MXU3_COLLI_8932 are exactly identical! WARNING: Sequences tr_K7FTJ8_K7FTJ8_PELSI_13735 and tr_A0A1S2ZNT7_A0A1S2ZNT7_ERIEU_9365 are exactly identical! WARNING: Sequences tr_K7FTJ8_K7FTJ8_PELSI_13735 and tr_A0A226MYZ8_A0A226MYZ8_CALSU_9009 are exactly identical! WARNING: Sequences tr_K7FTJ8_K7FTJ8_PELSI_13735 and tr_A0A2U3WI47_A0A2U3WI47_ODORO_9708 are exactly identical! WARNING: Sequences tr_K7FTJ8_K7FTJ8_PELSI_13735 and tr_A0A2U3XWI9_A0A2U3XWI9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_H0YVD4_H0YVD4_TAEGU_59729 and tr_U3KFA0_U3KFA0_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0YVD4_H0YVD4_TAEGU_59729 and tr_A0A218UCP4_A0A218UCP4_9PASE_299123 are exactly identical! WARNING: Sequences tr_B3MDL7_B3MDL7_DROAN_7217 and tr_B4LK54_B4LK54_DROVI_7244 are exactly identical! WARNING: Sequences tr_B3MDL7_B3MDL7_DROAN_7217 and tr_B4KMI5_B4KMI5_DROMO_7230 are exactly identical! WARNING: Sequences tr_B3MDL7_B3MDL7_DROAN_7217 and tr_A0A0M5J4Z9_A0A0M5J4Z9_DROBS_30019 are exactly identical! WARNING: Sequences tr_B3MDL7_B3MDL7_DROAN_7217 and tr_A0A1W4WCG1_A0A1W4WCG1_DROFC_30025 are exactly identical! WARNING: Sequences tr_G0MWI1_G0MWI1_CAEBE_135651 and tr_E3LCJ3_E3LCJ3_CAERE_31234 are exactly identical! WARNING: Sequences tr_G0MWI1_G0MWI1_CAEBE_135651 and tr_A0A261CQ26_A0A261CQ26_9PELO_1503980 are exactly identical! WARNING: Sequences sp_Q6GLE7_TBB5_XENTR_8364 and tr_A0A1L8F8L5_A0A1L8F8L5_XENLA_8355 are exactly identical! WARNING: Sequences tr_E3LZH1_E3LZH1_CAERE_31234 and tr_A0A261BVE2_A0A261BVE2_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3M8D5_E3M8D5_CAERE_31234 and tr_A0A261AGM9_A0A261AGM9_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3MAW7_E3MAW7_CAERE_31234 and tr_A0A1I7TZU1_A0A1I7TZU1_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A8XX81_A8XX81_CAEBR_6238 and tr_A0A2G5UJG9_A0A2G5UJG9_9PELO_1611254 are exactly identical! WARNING: Sequences tr_Q7RCR6_Q7RCR6_PLAYO_73239 and tr_A0A077XIN9_A0A077XIN9_PLABA_5823 are exactly identical! WARNING: Sequences tr_B3RQ31_B3RQ31_TRIAD_10228 and tr_A0A369S2L5_A0A369S2L5_9METZ_287889 are exactly identical! WARNING: Sequences tr_W4H3J1_W4H3J1_9STRA_112090 and tr_A0A024UEI6_A0A024UEI6_9STRA_157072 are exactly identical! WARNING: Sequences tr_A0A015L1D8_A0A015L1D8_9GLOM_1432141 and tr_A0A2H5SZX4_A0A2H5SZX4_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015MY77_A0A015MY77_9GLOM_1432141 and tr_A0A2H5U5Q8_A0A2H5U5Q8_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A044S6H4_A0A044S6H4_ONCVO_6282 and tr_A0A182E4Q1_A0A182E4Q1_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044S6H7_A0A044S6H7_ONCVO_6282 and tr_A0A182E4Q2_A0A182E4Q2_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A2K6VJ45_A0A2K6VJ45_ONCVO_6282 and tr_A0A182DZP1_A0A182DZP1_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067GIJ4_A0A067GIJ4_CITSI_2711 and tr_V4U815_V4U815_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A2K6EE35_A0A2K6EE35_PAPAN_9555 and tr_A0A2K5MEF9_A0A2K5MEF9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2K6EE35_A0A2K6EE35_PAPAN_9555 and tr_A0A2K5YT00_A0A2K5YT00_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0B2VUK1_A0A0B2VUK1_TOXCA_6265 and tr_A0A0B2VVI3_A0A0B2VVI3_TOXCA_6265 are exactly identical! WARNING: Sequences tr_A0A0K0F9G4_A0A0K0F9G4_STRVS_75913 and tr_A0A0N5BX82_A0A0N5BX82_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0FA74_A0A0K0FA74_STRVS_75913 and tr_A0A0N5B353_A0A0N5B353_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0FEL8_A0A0K0FEL8_STRVS_75913 and tr_A0A0K0EBU4_A0A0K0EBU4_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0FEL8_A0A0K0FEL8_STRVS_75913 and tr_A0A090LM73_A0A090LM73_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0K0FEL8_A0A0K0FEL8_STRVS_75913 and tr_A0A0N4Z915_A0A0N4Z915_PARTI_131310 are exactly identical! WARNING: Sequences tr_A0A0K0FEL8_A0A0K0FEL8_STRVS_75913 and tr_A0A0N5BSA7_A0A0N5BSA7_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0R3X7Q4_A0A0R3X7Q4_HYDTA_6205 and tr_A0A0R3W8G2_A0A0R3W8G2_TAEAS_60517 are exactly identical! WARNING: Sequences tr_A0A151NL66_A0A151NL66_ALLMI_8496 and tr_A0A1U7RNY6_A0A1U7RNY6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091JHG4_A0A091JHG4_EGRGA_188379 and tr_A0A091UTJ7_A0A091UTJ7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JHG4_A0A091JHG4_EGRGA_188379 and tr_A0A091W3B6_A0A091W3B6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091JHI7_A0A091JHI7_EGRGA_188379 and tr_A0A091V712_A0A091V712_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JHI7_A0A091JHI7_EGRGA_188379 and tr_A0A091GC44_A0A091GC44_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091X716_A0A091X716_NIPNI_128390 and tr_A0A093JWT8_A0A093JWT8_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A087R1W7_A0A087R1W7_APTFO_9233 and tr_A0A091IJW1_A0A091IJW1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091G669_A0A091G669_9AVES_55661 and tr_A0A091HH53_A0A091HH53_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A151X2S9_A0A151X2S9_9HYME_64791 and tr_A0A195FSZ2_A0A195FSZ2_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S4C858_A0A1S4C858_TOBAC_4097 and tr_A0A314KZQ2_A0A314KZQ2_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4C858_A0A1S4C858_TOBAC_4097 and tr_A0A1U7XPA9_A0A1U7XPA9_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3PVD9_A0A1S3PVD9_SALSA_8030 and tr_B5X3H7_B5X3H7_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3PVD9_A0A1S3PVD9_SALSA_8030 and tr_A0A060XNT9_A0A060XNT9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R3R0_A0A1S3R3R0_SALSA_8030 and tr_A0A060VX25_A0A060VX25_ONCMY_8022 are exactly identical! WARNING: Sequences tr_C0H808_C0H808_SALSA_8030 and tr_A0A060XV78_A0A060XV78_ONCMY_8022 are exactly identical! WARNING: Sequences tr_C0HBL4_C0HBL4_SALSA_8030 and tr_A0A060XGB4_A0A060XGB4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1I7UHY1_A0A1I7UHY1_9PELO_1561998 and tr_A0A2G5UG16_A0A2G5UG16_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A1Y2AWX1_A0A1Y2AWX1_9FUNG_1754190 and tr_A0A1Y1XFV5_A0A1Y1XFV5_9FUNG_1754192 are exactly identical! WARNING: Sequences tr_A0A2U4A5N1_A0A2U4A5N1_TURTR_9739 and tr_A0A2Y9LBQ2_A0A2Y9LBQ2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4A5N1_A0A2U4A5N1_TURTR_9739 and tr_A0A2Y9SH24_A0A2Y9SH24_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 318 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/4_raxmlng_ancestral/A6NNZ2.raxml.reduced.phy Alignment comprises 1 partitions and 444 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 444 Gaps: 0.98 % Invariant sites: 12.16 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/4_raxmlng_ancestral/A6NNZ2.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/3_mltree/A6NNZ2.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 111 / 8880 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -40817.002775 [00:00:00 -40817.002775] Initial branch length optimization [00:00:01 -35181.813205] Model parameter optimization (eps = 0.100000) RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 17:30:36 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/2_msa/A6NNZ2_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/3_mltree/A6NNZ2.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/4_raxmlng_ancestral/A6NNZ2 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626100236 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF WARNING: The model you specified on the command line (LG4X) will be ignored since the binary MSA file already contains a model definition. If you want to change the model, please re-run RAxML-NG with the original PHYLIP/FASTA alignment and --redo option. [00:00:00] Loading binary alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/4_raxmlng_ancestral/A6NNZ2.raxml.rba [00:00:00] Alignment comprises 1001 taxa, 1 partitions and 444 patterns Partition 0: noname Model: LG4X+R4 Alignment sites: 444 Gaps: 0.98 % Invariant sites: 12.16 % Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] NOTE: Resuming execution from checkpoint (logLH: -35181.81, ML trees: 0, bootstraps: 0) [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 111 / 8880 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -35181.813205 [00:00:00 -35181.813205] Model parameter optimization (eps = 0.100000) [00:00:37] Tree #1, final logLikelihood: -34864.167408 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.397215,0.357942) (0.413870,0.676682) (0.143888,1.733556) (0.045027,7.291738) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/4_raxmlng_ancestral/A6NNZ2.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/4_raxmlng_ancestral/A6NNZ2.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/4_raxmlng_ancestral/A6NNZ2.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NNZ2/4_raxmlng_ancestral/A6NNZ2.raxml.log Analysis started: 12-Jul-2021 17:30:36 / finished: 12-Jul-2021 17:31:17 Elapsed time: 41.173 seconds (this run) / 42.407 seconds (total with restarts) Consumed energy: 3.532 Wh