RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 03-Jul-2021 08:22:00 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NMZ7/2_msa/A6NMZ7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NMZ7/3_mltree/A6NMZ7 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NMZ7/2_msa/A6NMZ7_trimmed_msa.fasta
[00:00:00] Loaded alignment with 977 taxa and 62 sites

WARNING: Sequences tr_A0A1D5PJ38_A0A1D5PJ38_CHICK_9031 and tr_M3Y3L7_M3Y3L7_MUSPF_9669 are exactly identical!
WARNING: Sequences tr_A0A1D5PJ38_A0A1D5PJ38_CHICK_9031 and tr_F6WSE7_F6WSE7_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_A0A1D5PJ38_A0A1D5PJ38_CHICK_9031 and tr_A0A218UD95_A0A218UD95_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1D5PJ38_A0A1D5PJ38_CHICK_9031 and tr_A0A226NPY0_A0A226NPY0_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_G1NM15_G1NM15_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A093Q141_A0A093Q141_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A091VDM0_A0A091VDM0_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and sp_P15989_CO6A3_CHICK_9031 are exactly identical!
WARNING: Sequences sp_Q05722_CO9A1_MOUSE_10090 and tr_F7FRA3_F7FRA3_MONDO_13616 are exactly identical!
WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_G1QYG6_G1QYG6_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_G3S125_G3S125_GORGO_9595 are exactly identical!
WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_H2PJL6_H2PJL6_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_H2QTA4_H2QTA4_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and sp_Q99715_COCA1_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A1D5Q4K0_A0A1D5Q4K0_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A0D9RNM7_A0A0D9RNM7_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2K5P5K0_A0A2K5P5K0_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2K6DG14_A0A2K6DG14_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2K5ZDS6_A0A2K5ZDS6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_M3XLW9_M3XLW9_MUSPF_9669 and tr_G1LP52_G1LP52_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3XLW9_M3XLW9_MUSPF_9669 and tr_A0A2Y9IWV7_A0A2Y9IWV7_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XLW9_M3XLW9_MUSPF_9669 and tr_A0A384C2X5_A0A384C2X5_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3XRA5_M3XRA5_MUSPF_9669 and tr_A0A2Y9KKH1_A0A2Y9KKH1_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_G1LJ22_G1LJ22_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A384C518_A0A384C518_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3XYD6_M3XYD6_MUSPF_9669 and tr_A0A3Q0DKI8_A0A3Q0DKI8_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_M3XYD6_M3XYD6_MUSPF_9669 and tr_A0A2Y9JZ32_A0A2Y9JZ32_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_G1MGG8_G1MGG8_AILME_9646 are exactly identical!
WARNING: Sequences tr_G1RJF0_G1RJF0_NOMLE_61853 and tr_G3QJ50_G3QJ50_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1RJF0_G1RJF0_NOMLE_61853 and tr_H2P914_H2P914_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1RJF0_G1RJF0_NOMLE_61853 and tr_H2QJP2_H2QJP2_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1RJF0_G1RJF0_NOMLE_61853 and sp_P12111_CO6A3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1S211_G1S211_NOMLE_61853 and tr_G3SFN7_G3SFN7_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1S211_G1S211_NOMLE_61853 and tr_H2P6I2_H2P6I2_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1S211_G1S211_NOMLE_61853 and tr_H2R8V5_H2R8V5_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1S211_G1S211_NOMLE_61853 and sp_Q6UXI7_VITRN_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1S211_G1S211_NOMLE_61853 and tr_A0A2R9BC08_A0A2R9BC08_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3QW83_G3QW83_GORGO_9595 and tr_H2QMJ5_H2QMJ5_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QW83_G3QW83_GORGO_9595 and tr_A0A2R9AJ42_A0A2R9AJ42_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3R3K3_G3R3K3_GORGO_9595 and tr_H2QWR6_H2QWR6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3R3K3_G3R3K3_GORGO_9595 and sp_Q8NFW1_COMA1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_C3YQB2_C3YQB2_BRAFL_7739 and tr_C3YQB3_C3YQB3_BRAFL_7739 are exactly identical!
WARNING: Sequences tr_C3YQB2_C3YQB2_BRAFL_7739 and tr_C3ZCZ6_C3ZCZ6_BRAFL_7739 are exactly identical!
WARNING: Sequences tr_C3YQB2_C3YQB2_BRAFL_7739 and tr_C3ZCZ7_C3ZCZ7_BRAFL_7739 are exactly identical!
WARNING: Sequences tr_H2N6W1_H2N6W1_PONAB_9601 and tr_A0A2I3RU50_A0A2I3RU50_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H2N6W1_H2N6W1_PONAB_9601 and sp_Q17RW2_COOA1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2N6W1_H2N6W1_PONAB_9601 and tr_G7NTL3_G7NTL3_MACFA_9541 are exactly identical!
WARNING: Sequences tr_H2N6W1_H2N6W1_PONAB_9601 and tr_A0A096NXN5_A0A096NXN5_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_H2N6W1_H2N6W1_PONAB_9601 and tr_A0A0D9S6V0_A0A0D9S6V0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_H2N6W1_H2N6W1_PONAB_9601 and tr_A0A2K6D175_A0A2K6D175_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H2N6W1_H2N6W1_PONAB_9601 and tr_A0A2K5XAR4_A0A2K5XAR4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_H2N6W1_H2N6W1_PONAB_9601 and tr_A0A2R9AJT8_A0A2R9AJT8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2P3H3_H2P3H3_PONAB_9601 and tr_G7P042_G7P042_MACFA_9541 are exactly identical!
WARNING: Sequences tr_H2P3H3_H2P3H3_PONAB_9601 and tr_A0A096NI97_A0A096NI97_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_H2P3H3_H2P3H3_PONAB_9601 and tr_A0A0D9R4H0_A0A0D9R4H0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_H2P3H3_H2P3H3_PONAB_9601 and tr_A0A2K5NK39_A0A2K5NK39_CERAT_9531 are exactly identical!
WARNING: Sequences tr_H2P3H3_H2P3H3_PONAB_9601 and tr_A0A2K6CKR7_A0A2K6CKR7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H2P3H3_H2P3H3_PONAB_9601 and tr_A0A2K5XKZ9_A0A2K5XKZ9_MANLE_9568 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_F6QD89_F6QD89_HORSE_9796 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_W5P8W6_W5P8W6_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_I3M0L4_I3M0L4_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_H0XDW0_H0XDW0_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_G1M7A5_G1M7A5_AILME_9646 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_F1N401_F1N401_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_M3XED7_M3XED7_FELCA_9685 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_A0A1S3GL12_A0A1S3GL12_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_A0A1U7QV79_A0A1U7QV79_MESAU_10036 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_A0A2U4AV69_A0A2U4AV69_TURTR_9739 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_A0A2U3ZLY5_A0A2U3ZLY5_ODORO_9708 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_A0A2Y9PSZ7_A0A2Y9PSZ7_DELLE_9749 are exactly identical!
WARNING: Sequences tr_J9P6G0_J9P6G0_CANLF_9615 and tr_A0A384BKN3_A0A384BKN3_URSMA_29073 are exactly identical!
WARNING: Sequences tr_H2QND2_H2QND2_PANTR_9598 and sp_A6NMZ7_CO6A6_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2QND3_H2QND3_PANTR_9598 and sp_A8TX70_CO6A5_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2RBZ7_H2RBZ7_PANTR_9598 and tr_A0A2R8ZGJ5_A0A2R8ZGJ5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_W5PTN6_W5PTN6_SHEEP_9940 and tr_F1MKG2_F1MKG2_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5PTN6_W5PTN6_SHEEP_9940 and tr_A0A2Y9Q511_A0A2Y9Q511_DELLE_9749 are exactly identical!
WARNING: Sequences tr_W5PTN6_W5PTN6_SHEEP_9940 and tr_A0A2Y9FH40_A0A2Y9FH40_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_F1LNH3_F1LNH3_RAT_10116 and tr_A0A3Q0CQZ0_A0A3Q0CQZ0_MESAU_10036 are exactly identical!
WARNING: Sequences tr_F1LNH3_F1LNH3_RAT_10116 and tr_D0G6X2_D0G6X2_MESAU_10036 are exactly identical!
WARNING: Sequences tr_M4AJD2_M4AJD2_XIPMA_8083 and tr_A0A087XJE9_A0A087XJE9_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A1D5RDG7_A0A1D5RDG7_MACMU_9544 and tr_G7NY04_G7NY04_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1D5RDG7_A0A1D5RDG7_MACMU_9544 and tr_A0A096N9M9_A0A096N9M9_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5RDG7_A0A1D5RDG7_MACMU_9544 and tr_A0A2K6B911_A0A2K6B911_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5RDG7_A0A1D5RDG7_MACMU_9544 and tr_A0A2K5XYG8_A0A2K5XYG8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6UGC1_F6UGC1_MACMU_9544 and tr_A0A2K6E5E8_A0A2K6E5E8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7AG99_F7AG99_MACMU_9544 and tr_A0A0D9R1F2_A0A0D9R1F2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7AG99_F7AG99_MACMU_9544 and tr_A0A2K5Y9T7_A0A2K5Y9T7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7BUH6_F7BUH6_MACMU_9544 and tr_G7PM07_G7PM07_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7BUH6_F7BUH6_MACMU_9544 and tr_A0A0D9RHJ3_A0A0D9RHJ3_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7BUH6_F7BUH6_MACMU_9544 and tr_A0A2K5KKP1_A0A2K5KKP1_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7BUH6_F7BUH6_MACMU_9544 and tr_A0A2K6DZZ4_A0A2K6DZZ4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7BUH6_F7BUH6_MACMU_9544 and tr_A0A2K5YRS9_A0A2K5YRS9_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7FYZ2_F7FYZ2_MACMU_9544 and tr_A0A096N2S0_A0A096N2S0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7FYZ2_F7FYZ2_MACMU_9544 and tr_A0A2K6CSK8_A0A2K6CSK8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7FYZ2_F7FYZ2_MACMU_9544 and tr_A0A2K5ZT07_A0A2K5ZT07_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7H069_F7H069_MACMU_9544 and tr_A0A0D9RCT6_A0A0D9RCT6_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7H069_F7H069_MACMU_9544 and tr_A0A2K6BUT8_A0A2K6BUT8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7ATR0_F7ATR0_XENTR_8364 and tr_A0A1U8DDV7_A0A1U8DDV7_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_G1LDU4_G1LDU4_AILME_9646 and tr_A0A384DS66_A0A384DS66_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1MFQ9_G1MFQ9_AILME_9646 and tr_A0A384C3N2_A0A384C3N2_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1MI33_G1MI33_AILME_9646 and tr_A0A2U3YL46_A0A2U3YL46_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_G1MI33_G1MI33_AILME_9646 and tr_A0A2Y9J3K0_A0A2Y9J3K0_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G7PZ58_G7PZ58_MACFA_9541 and tr_A0A0A0MU39_A0A0A0MU39_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G7PZ58_G7PZ58_MACFA_9541 and tr_A0A2K6BS49_A0A2K6BS49_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G8F312_G8F312_MACFA_9541 and tr_A0A096NRK5_A0A096NRK5_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G8F312_G8F312_MACFA_9541 and tr_A0A0D9RSP0_A0A0D9RSP0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G8F312_G8F312_MACFA_9541 and tr_A0A2K6DXC3_A0A2K6DXC3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G8F312_G8F312_MACFA_9541 and tr_A0A2K5YZK9_A0A2K5YZK9_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F1MER4_F1MER4_BOVIN_9913 and sp_Q95LI2_VITRN_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_U3JIL1_U3JIL1_FICAL_59894 and tr_A0A091HRB0_A0A091HRB0_CALAN_9244 are exactly identical!
WARNING: Sequences tr_U3JJF8_U3JJF8_FICAL_59894 and tr_A0A091VXL2_A0A091VXL2_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_U3JJF8_U3JJF8_FICAL_59894 and tr_A0A0A0APF8_A0A0A0APF8_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A0P7TVW0_A0A0P7TVW0_9TELE_113540 and tr_A0A226N0Y0_A0A226N0Y0_CALSU_9009 are exactly identical!
WARNING: Sequences tr_A0A151MF97_A0A151MF97_ALLMI_8496 and tr_A0A1U7S1Y9_A0A1U7S1Y9_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151MHC3_A0A151MHC3_ALLMI_8496 and tr_A0A1U7RI60_A0A1U7RI60_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151MR48_A0A151MR48_ALLMI_8496 and tr_A0A1U8DW70_A0A1U8DW70_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NAB7_A0A151NAB7_ALLMI_8496 and tr_A0A1U7SAT2_A0A1U7SAT2_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151PDF4_A0A151PDF4_ALLMI_8496 and tr_A0A1U7SA41_A0A1U7SA41_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A091W4K2_A0A091W4K2_OPIHO_30419 and tr_A0A2I0LY99_A0A2I0LY99_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A091W4K2_A0A091W4K2_OPIHO_30419 and tr_A0A1V4JJZ6_A0A1V4JJZ6_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A2I0MIG7_A0A2I0MIG7_COLLI_8932 and tr_A0A1V4K6R7_A0A1V4K6R7_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A1S3PIX7_A0A1S3PIX7_SALSA_8030 and tr_A0A1S3PIZ1_A0A1S3PIZ1_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3PYN1_A0A1S3PYN1_SALSA_8030 and tr_A0A060WRV2_A0A060WRV2_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A060YV78_A0A060YV78_ONCMY_8022 and tr_A0A060ZLX4_A0A060ZLX4_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A2D0QP39_A0A2D0QP39_ICTPU_7998 and tr_A0A2D0QQS3_A0A2D0QQS3_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0QP39_A0A2D0QP39_ICTPU_7998 and tr_A0A2D0QRG5_A0A2D0QRG5_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2U4BZB7_A0A2U4BZB7_TURTR_9739 and tr_A0A2Y9SFW5_A0A2Y9SFW5_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2Y9NI38_A0A2Y9NI38_DELLE_9749 and tr_A0A2Y9SSZ2_A0A2Y9SSZ2_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2Y9NI38_A0A2Y9NI38_DELLE_9749 and tr_A0A383Z1V0_A0A383Z1V0_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 129

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NMZ7/3_mltree/A6NMZ7.raxml.reduced.phy

Alignment comprises 1 partitions and 62 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 62 / 62
Gaps: 13.54 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NMZ7/3_mltree/A6NMZ7.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 977 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 62 / 4960
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -100882.077478] Initial branch length optimization
[00:00:01 -83641.450032] Model parameter optimization (eps = 10.000000)
[00:00:37 -83251.772164] AUTODETECT spr round 1 (radius: 5)
[00:01:53 -61913.379248] AUTODETECT spr round 2 (radius: 10)
[00:03:20 -46715.706510] AUTODETECT spr round 3 (radius: 15)
[00:04:52 -40618.151997] AUTODETECT spr round 4 (radius: 20)
[00:06:36 -37789.247294] AUTODETECT spr round 5 (radius: 25)
[00:08:33 -35792.379747] SPR radius for FAST iterations: 25 (autodetect)
[00:08:33 -35792.379747] Model parameter optimization (eps = 3.000000)
[00:08:47 -35680.591920] FAST spr round 1 (radius: 25)
[00:10:37 -30164.269322] FAST spr round 2 (radius: 25)
[00:12:06 -28634.151079] FAST spr round 3 (radius: 25)
[00:13:26 -28007.984918] FAST spr round 4 (radius: 25)
[00:14:41 -27701.268860] FAST spr round 5 (radius: 25)
[00:15:51 -27691.407515] FAST spr round 6 (radius: 25)
[00:16:59 -27691.406562] Model parameter optimization (eps = 1.000000)
[00:17:06 -27689.431849] SLOW spr round 1 (radius: 5)
[00:18:27 -27678.179049] SLOW spr round 2 (radius: 5)
[00:19:47 -27672.866112] SLOW spr round 3 (radius: 5)
[00:21:05 -27672.779498] SLOW spr round 4 (radius: 10)
[00:22:28 -27622.279828] SLOW spr round 5 (radius: 5)
[00:24:04 -27622.276082] SLOW spr round 6 (radius: 10)
[00:25:34 -27619.345857] SLOW spr round 7 (radius: 5)
[00:27:11 -27610.261018] SLOW spr round 8 (radius: 5)
[00:28:37 -27610.260986] SLOW spr round 9 (radius: 10)
[00:30:00 -27610.260965] SLOW spr round 10 (radius: 15)
[00:32:00 -27609.237969] SLOW spr round 11 (radius: 5)
[00:33:43 -27609.235816] SLOW spr round 12 (radius: 10)
[00:35:17 -27609.235713] SLOW spr round 13 (radius: 15)
[00:37:16 -27601.804653] SLOW spr round 14 (radius: 5)
[00:38:59 -27600.048527] SLOW spr round 15 (radius: 5)
[00:40:30 -27599.957255] SLOW spr round 16 (radius: 10)
[00:41:56 -27599.955641] SLOW spr round 17 (radius: 15)
[00:43:55 -27599.955071] SLOW spr round 18 (radius: 20)
[00:46:32 -27594.916586] SLOW spr round 19 (radius: 5)
[00:48:16 -27594.916410] SLOW spr round 20 (radius: 10)
[00:49:52 -27594.916366] SLOW spr round 21 (radius: 15)
[00:51:49 -27594.916340] SLOW spr round 22 (radius: 20)
[00:54:27 -27594.916324] SLOW spr round 23 (radius: 25)
[00:57:32 -27594.622415] SLOW spr round 24 (radius: 5)
[00:59:16 -27592.122761] SLOW spr round 25 (radius: 5)
[01:00:48 -27592.122754] SLOW spr round 26 (radius: 10)
[01:02:16 -27591.528415] SLOW spr round 27 (radius: 5)
[01:03:54 -27591.527232] SLOW spr round 28 (radius: 10)
[01:05:24 -27591.527221] SLOW spr round 29 (radius: 15)
[01:07:23 -27591.527216] SLOW spr round 30 (radius: 20)
[01:10:02 -27590.397331] SLOW spr round 31 (radius: 5)
[01:11:50 -27588.882092] SLOW spr round 32 (radius: 5)
[01:13:24 -27587.510671] SLOW spr round 33 (radius: 5)
[01:14:50 -27587.508681] SLOW spr round 34 (radius: 10)
[01:16:15 -27587.508549] SLOW spr round 35 (radius: 15)
[01:18:20 -27587.508536] SLOW spr round 36 (radius: 20)
[01:21:02 -27587.508531] SLOW spr round 37 (radius: 25)
[01:24:15 -27587.460143] Model parameter optimization (eps = 0.100000)

[01:24:18] ML tree search #1, logLikelihood: -27587.411184

[01:24:18 -100730.754870] Initial branch length optimization
[01:24:19 -83615.348534] Model parameter optimization (eps = 10.000000)
[01:24:48 -83239.346258] AUTODETECT spr round 1 (radius: 5)
[01:26:05 -60900.888868] AUTODETECT spr round 2 (radius: 10)
[01:27:33 -45435.721541] AUTODETECT spr round 3 (radius: 15)
[01:29:06 -39561.978092] AUTODETECT spr round 4 (radius: 20)
[01:30:47 -35488.772735] AUTODETECT spr round 5 (radius: 25)
[01:32:33 -33876.606978] SPR radius for FAST iterations: 25 (autodetect)
[01:32:33 -33876.606978] Model parameter optimization (eps = 3.000000)
[01:32:46 -33784.232686] FAST spr round 1 (radius: 25)
[01:34:29 -29215.148456] FAST spr round 2 (radius: 25)
[01:35:55 -28021.559047] FAST spr round 3 (radius: 25)
[01:37:11 -27770.084702] FAST spr round 4 (radius: 25)
[01:38:24 -27683.472376] FAST spr round 5 (radius: 25)
[01:39:33 -27657.297619] FAST spr round 6 (radius: 25)
[01:40:38 -27656.013936] FAST spr round 7 (radius: 25)
[01:41:43 -27656.011620] Model parameter optimization (eps = 1.000000)
[01:41:54 -27651.494670] SLOW spr round 1 (radius: 5)
[01:43:16 -27645.200042] SLOW spr round 2 (radius: 5)
[01:44:38 -27644.050279] SLOW spr round 3 (radius: 5)
[01:45:59 -27641.869928] SLOW spr round 4 (radius: 5)
[01:47:20 -27640.111789] SLOW spr round 5 (radius: 5)
[01:48:40 -27637.900355] SLOW spr round 6 (radius: 5)
[01:49:58 -27637.899910] SLOW spr round 7 (radius: 10)
[01:51:18 -27636.829889] SLOW spr round 8 (radius: 5)
[01:52:56 -27636.526576] SLOW spr round 9 (radius: 5)
[01:54:23 -27636.526173] SLOW spr round 10 (radius: 10)
[01:55:48 -27634.926115] SLOW spr round 11 (radius: 5)
[01:57:26 -27632.542563] SLOW spr round 12 (radius: 5)
[01:58:53 -27632.542519] SLOW spr round 13 (radius: 10)
[02:00:16 -27632.542503] SLOW spr round 14 (radius: 15)
[02:02:12 -27632.542488] SLOW spr round 15 (radius: 20)
[02:04:50 -27626.683584] SLOW spr round 16 (radius: 5)
[02:06:34 -27626.576597] SLOW spr round 17 (radius: 5)
[02:08:07 -27626.576445] SLOW spr round 18 (radius: 10)
[02:09:35 -27625.742687] SLOW spr round 19 (radius: 5)
[02:11:13 -27625.740746] SLOW spr round 20 (radius: 10)
[02:12:43 -27625.740262] SLOW spr round 21 (radius: 15)
[02:14:39 -27625.740123] SLOW spr round 22 (radius: 20)
[02:17:12 -27625.716492] SLOW spr round 23 (radius: 25)
[02:20:16 -27624.301834] SLOW spr round 24 (radius: 5)
[02:22:03 -27582.104700] SLOW spr round 25 (radius: 5)
[02:23:36 -27582.104691] SLOW spr round 26 (radius: 10)
[02:25:03 -27581.975696] SLOW spr round 27 (radius: 5)
[02:26:42 -27581.975089] SLOW spr round 28 (radius: 10)
[02:28:12 -27581.975033] SLOW spr round 29 (radius: 15)
[02:30:10 -27581.975025] SLOW spr round 30 (radius: 20)
[02:32:46 -27580.262896] SLOW spr round 31 (radius: 5)
[02:34:29 -27580.257085] SLOW spr round 32 (radius: 10)
[02:36:05 -27580.256834] SLOW spr round 33 (radius: 15)
[02:37:59 -27580.256821] SLOW spr round 34 (radius: 20)
[02:40:32 -27580.256819] SLOW spr round 35 (radius: 25)
[02:43:36 -27580.256817] Model parameter optimization (eps = 0.100000)

[02:43:41] ML tree search #2, logLikelihood: -27579.902098

[02:43:41 -100757.382797] Initial branch length optimization
[02:43:43 -83305.189820] Model parameter optimization (eps = 10.000000)
[02:44:05 -83042.395020] AUTODETECT spr round 1 (radius: 5)
[02:45:21 -61917.452295] AUTODETECT spr round 2 (radius: 10)
[02:46:48 -45895.577437] AUTODETECT spr round 3 (radius: 15)
[02:48:21 -39941.760241] AUTODETECT spr round 4 (radius: 20)
[02:50:01 -36193.687878] AUTODETECT spr round 5 (radius: 25)
[02:51:45 -34954.970982] SPR radius for FAST iterations: 25 (autodetect)
[02:51:45 -34954.970982] Model parameter optimization (eps = 3.000000)
[02:52:05 -34872.204552] FAST spr round 1 (radius: 25)
[02:53:54 -29624.042032] FAST spr round 2 (radius: 25)
[02:55:20 -28791.245728] FAST spr round 3 (radius: 25)
[02:56:36 -28502.111994] FAST spr round 4 (radius: 25)
[02:57:47 -28443.098197] FAST spr round 5 (radius: 25)
[02:58:55 -28441.703293] FAST spr round 6 (radius: 25)
[03:00:01 -28441.702618] Model parameter optimization (eps = 1.000000)
[03:00:10 -28439.444154] SLOW spr round 1 (radius: 5)
[03:01:37 -28428.910700] SLOW spr round 2 (radius: 5)
[03:03:03 -28424.725397] SLOW spr round 3 (radius: 5)
[03:04:25 -28424.725197] SLOW spr round 4 (radius: 10)
[03:06:05 -28263.619867] SLOW spr round 5 (radius: 5)
[03:07:52 -28132.710657] SLOW spr round 6 (radius: 5)
[03:09:27 -28119.122706] SLOW spr round 7 (radius: 5)
[03:10:54 -28117.268980] SLOW spr round 8 (radius: 5)
[03:12:18 -28117.099041] SLOW spr round 9 (radius: 5)
[03:13:40 -28117.097854] SLOW spr round 10 (radius: 10)
[03:15:04 -28115.455689] SLOW spr round 11 (radius: 5)
[03:16:45 -28115.454363] SLOW spr round 12 (radius: 10)
[03:18:18 -28115.454303] SLOW spr round 13 (radius: 15)
[03:20:19 -28112.869701] SLOW spr round 14 (radius: 5)
[03:22:06 -28107.284442] SLOW spr round 15 (radius: 5)
[03:23:40 -28107.283266] SLOW spr round 16 (radius: 10)
[03:25:08 -28107.283246] SLOW spr round 17 (radius: 15)
[03:27:10 -28107.283227] SLOW spr round 18 (radius: 20)
[03:29:42 -28106.714633] SLOW spr round 19 (radius: 5)
[03:31:28 -28106.714410] SLOW spr round 20 (radius: 10)
[03:33:06 -28104.406185] SLOW spr round 21 (radius: 5)
[03:34:45 -28104.406139] SLOW spr round 22 (radius: 10)
[03:36:16 -28104.406123] SLOW spr round 23 (radius: 15)
[03:38:17 -28104.406108] SLOW spr round 24 (radius: 20)
[03:40:49 -28104.406093] SLOW spr round 25 (radius: 25)
[03:43:47 -28101.057505] SLOW spr round 26 (radius: 5)
[03:45:35 -28100.306190] SLOW spr round 27 (radius: 5)
[03:47:10 -28100.305519] SLOW spr round 28 (radius: 10)
[03:48:39 -28100.305324] SLOW spr round 29 (radius: 15)
[03:50:44 -28099.988650] SLOW spr round 30 (radius: 5)
[03:52:28 -28099.748800] SLOW spr round 31 (radius: 5)
[03:54:01 -28099.526711] SLOW spr round 32 (radius: 5)
[03:55:28 -28099.526665] SLOW spr round 33 (radius: 10)
[03:56:53 -28099.526652] SLOW spr round 34 (radius: 15)
[03:59:00 -28099.526642] SLOW spr round 35 (radius: 20)
[04:01:33 -28099.269755] SLOW spr round 36 (radius: 5)
[04:03:19 -28099.269279] SLOW spr round 37 (radius: 10)
[04:04:56 -28099.269274] SLOW spr round 38 (radius: 15)
[04:06:57 -28099.269274] SLOW spr round 39 (radius: 20)
[04:09:32 -28099.269274] SLOW spr round 40 (radius: 25)
[04:12:32 -28083.629985] SLOW spr round 41 (radius: 5)
[04:14:24 -28071.387866] SLOW spr round 42 (radius: 5)
[04:16:00 -28069.825349] SLOW spr round 43 (radius: 5)
[04:17:29 -28069.514083] SLOW spr round 44 (radius: 5)
[04:18:52 -28069.513381] SLOW spr round 45 (radius: 10)
[04:20:19 -27925.975641] SLOW spr round 46 (radius: 5)
[04:22:04 -27763.581783] SLOW spr round 47 (radius: 5)
[04:23:38 -27676.137706] SLOW spr round 48 (radius: 5)
[04:25:06 -27671.519142] SLOW spr round 49 (radius: 5)
[04:26:30 -27667.834800] SLOW spr round 50 (radius: 5)
[04:27:47 -27667.834186] SLOW spr round 51 (radius: 10)
[04:29:00 -27662.455083] SLOW spr round 52 (radius: 5)
[04:30:29 -27658.584632] SLOW spr round 53 (radius: 5)
[04:31:48 -27658.584595] SLOW spr round 54 (radius: 10)
[04:33:05 -27658.584595] SLOW spr round 55 (radius: 15)
[04:34:53 -27655.120952] SLOW spr round 56 (radius: 5)
[04:36:24 -27655.120855] SLOW spr round 57 (radius: 10)
[04:37:48 -27655.120854] SLOW spr round 58 (radius: 15)
[04:39:32 -27655.120854] SLOW spr round 59 (radius: 20)
[04:41:44 -27655.029238] SLOW spr round 60 (radius: 25)
[04:44:14 -27655.029215] Model parameter optimization (eps = 0.100000)

[04:44:19] ML tree search #3, logLikelihood: -27654.923607

[04:44:19 -100634.306163] Initial branch length optimization
[04:44:20 -83094.318958] Model parameter optimization (eps = 10.000000)
[04:44:48 -82734.811669] AUTODETECT spr round 1 (radius: 5)
[04:45:55 -61973.984599] AUTODETECT spr round 2 (radius: 10)
[04:47:12 -46019.879682] AUTODETECT spr round 3 (radius: 15)
[04:48:36 -38128.839066] AUTODETECT spr round 4 (radius: 20)
[04:50:10 -33885.815806] AUTODETECT spr round 5 (radius: 25)
[04:51:57 -32946.695400] SPR radius for FAST iterations: 25 (autodetect)
[04:51:57 -32946.695400] Model parameter optimization (eps = 3.000000)
[04:52:10 -32842.933439] FAST spr round 1 (radius: 25)
[04:53:43 -28396.830394] FAST spr round 2 (radius: 25)
[04:54:56 -27965.477082] FAST spr round 3 (radius: 25)
[04:56:04 -27829.900582] FAST spr round 4 (radius: 25)
[04:57:08 -27802.782657] FAST spr round 5 (radius: 25)
[04:58:08 -27800.287225] FAST spr round 6 (radius: 25)
[04:59:07 -27800.151268] FAST spr round 7 (radius: 25)
[05:00:05 -27800.149393] Model parameter optimization (eps = 1.000000)
[05:00:09 -27799.316086] SLOW spr round 1 (radius: 5)
[05:01:25 -27792.918287] SLOW spr round 2 (radius: 5)
[05:02:41 -27792.916338] SLOW spr round 3 (radius: 10)
[05:03:58 -27789.696045] SLOW spr round 4 (radius: 5)
[05:05:38 -27786.766649] SLOW spr round 5 (radius: 5)
[05:07:04 -27786.765475] SLOW spr round 6 (radius: 10)
[05:08:26 -27786.693973] SLOW spr round 7 (radius: 15)
[05:10:22 -27786.693786] SLOW spr round 8 (radius: 20)
[05:13:07 -27781.901200] SLOW spr round 9 (radius: 5)
[05:14:52 -27780.648814] SLOW spr round 10 (radius: 5)
[05:16:22 -27780.646275] SLOW spr round 11 (radius: 10)
[05:17:44 -27780.646175] SLOW spr round 12 (radius: 15)
[05:19:41 -27780.646075] SLOW spr round 13 (radius: 20)
[05:22:31 -27777.076563] SLOW spr round 14 (radius: 5)
[05:24:12 -27777.076465] SLOW spr round 15 (radius: 10)
[05:25:43 -27777.076367] SLOW spr round 16 (radius: 15)
[05:27:38 -27777.076271] SLOW spr round 17 (radius: 20)
[05:30:30 -27776.951117] SLOW spr round 18 (radius: 5)
[05:32:11 -27776.949902] SLOW spr round 19 (radius: 10)
[05:33:43 -27776.949804] SLOW spr round 20 (radius: 15)
[05:35:38 -27776.949713] SLOW spr round 21 (radius: 20)
[05:38:29 -27776.949622] SLOW spr round 22 (radius: 25)
[05:41:57 -27710.153014] SLOW spr round 23 (radius: 5)
[05:43:43 -27674.089370] SLOW spr round 24 (radius: 5)
[05:45:16 -27617.380095] SLOW spr round 25 (radius: 5)
[05:46:40 -27617.115535] SLOW spr round 26 (radius: 5)
[05:47:59 -27617.114754] SLOW spr round 27 (radius: 10)
[05:49:18 -27616.835940] SLOW spr round 28 (radius: 5)
[05:50:54 -27616.693616] SLOW spr round 29 (radius: 5)
[05:52:19 -27616.692303] SLOW spr round 30 (radius: 10)
[05:53:40 -27616.692184] SLOW spr round 31 (radius: 15)
[05:55:40 -27616.692162] SLOW spr round 32 (radius: 20)
[05:58:30 -27616.692147] SLOW spr round 33 (radius: 25)
[06:01:59 -27607.405615] SLOW spr round 34 (radius: 5)
[06:03:41 -27606.960276] SLOW spr round 35 (radius: 5)
[06:05:10 -27606.959657] SLOW spr round 36 (radius: 10)
[06:06:32 -27606.959636] SLOW spr round 37 (radius: 15)
[06:08:30 -27606.959625] SLOW spr round 38 (radius: 20)
[06:11:21 -27606.959615] SLOW spr round 39 (radius: 25)
[06:14:48 -27606.959604] Model parameter optimization (eps = 0.100000)

[06:14:50] ML tree search #4, logLikelihood: -27606.915632

[06:14:50 -101151.600741] Initial branch length optimization
[06:14:52 -84198.790601] Model parameter optimization (eps = 10.000000)
[06:15:19 -83796.101083] AUTODETECT spr round 1 (radius: 5)
[06:16:26 -63025.798620] AUTODETECT spr round 2 (radius: 10)
[06:17:44 -48151.343164] AUTODETECT spr round 3 (radius: 15)
[06:19:08 -38618.480718] AUTODETECT spr round 4 (radius: 20)
[06:20:36 -34766.295500] AUTODETECT spr round 5 (radius: 25)
[06:22:17 -33386.935209] SPR radius for FAST iterations: 25 (autodetect)
[06:22:17 -33386.935209] Model parameter optimization (eps = 3.000000)
[06:22:29 -33279.355697] FAST spr round 1 (radius: 25)
[06:23:51 -28551.450124] FAST spr round 2 (radius: 25)
[06:25:01 -28113.686598] FAST spr round 3 (radius: 25)
[06:26:04 -28066.006380] FAST spr round 4 (radius: 25)
[06:27:06 -28057.931093] FAST spr round 5 (radius: 25)
[06:28:04 -28057.930172] Model parameter optimization (eps = 1.000000)
[06:28:12 -28056.023806] SLOW spr round 1 (radius: 5)
[06:29:28 -28042.492882] SLOW spr round 2 (radius: 5)
[06:30:45 -28038.673514] SLOW spr round 3 (radius: 5)
[06:32:01 -28038.206918] SLOW spr round 4 (radius: 5)
[06:33:15 -28037.680016] SLOW spr round 5 (radius: 5)
[06:34:28 -28037.678658] SLOW spr round 6 (radius: 10)
[06:35:42 -28037.677691] SLOW spr round 7 (radius: 15)
[06:37:38 -28031.947742] SLOW spr round 8 (radius: 5)
[06:39:14 -28031.934408] SLOW spr round 9 (radius: 10)
[06:40:41 -28029.360598] SLOW spr round 10 (radius: 5)
[06:42:14 -28027.166733] SLOW spr round 11 (radius: 5)
[06:43:37 -28024.181980] SLOW spr round 12 (radius: 5)
[06:44:54 -28023.546108] SLOW spr round 13 (radius: 5)
[06:46:08 -28023.544281] SLOW spr round 14 (radius: 10)
[06:47:23 -28023.544124] SLOW spr round 15 (radius: 15)
[06:49:16 -28017.623751] SLOW spr round 16 (radius: 5)
[06:50:52 -28016.752473] SLOW spr round 17 (radius: 5)
[06:52:15 -28016.751628] SLOW spr round 18 (radius: 10)
[06:53:34 -28016.539924] SLOW spr round 19 (radius: 5)
[06:55:03 -28016.539830] SLOW spr round 20 (radius: 10)
[06:56:25 -28016.539802] SLOW spr round 21 (radius: 15)
[06:58:13 -28013.974295] SLOW spr round 22 (radius: 5)
[06:59:47 -28013.408488] SLOW spr round 23 (radius: 5)
[07:01:11 -28013.408379] SLOW spr round 24 (radius: 10)
[07:02:31 -28011.560695] SLOW spr round 25 (radius: 5)
[07:04:04 -28010.550492] SLOW spr round 26 (radius: 5)
[07:05:30 -28009.637144] SLOW spr round 27 (radius: 5)
[07:06:47 -28009.636895] SLOW spr round 28 (radius: 10)
[07:08:05 -28009.244858] SLOW spr round 29 (radius: 5)
[07:09:37 -28009.244661] SLOW spr round 30 (radius: 10)
[07:11:01 -28009.244656] SLOW spr round 31 (radius: 15)
[07:12:50 -28007.792105] SLOW spr round 32 (radius: 5)
[07:14:28 -28007.560889] SLOW spr round 33 (radius: 5)
[07:15:55 -28006.967567] SLOW spr round 34 (radius: 5)
[07:17:15 -28005.864800] SLOW spr round 35 (radius: 5)
[07:18:31 -28005.864752] SLOW spr round 36 (radius: 10)
[07:19:47 -28005.864750] SLOW spr round 37 (radius: 15)
[07:21:41 -28005.429548] SLOW spr round 38 (radius: 5)
[07:23:17 -27977.488339] SLOW spr round 39 (radius: 5)
[07:24:41 -27977.488337] SLOW spr round 40 (radius: 10)
[07:26:00 -27977.488336] SLOW spr round 41 (radius: 15)
[07:27:51 -27977.488334] SLOW spr round 42 (radius: 20)
[07:30:16 -27975.127094] SLOW spr round 43 (radius: 5)
[07:31:58 -27972.590067] SLOW spr round 44 (radius: 5)
[07:33:32 -27967.777656] SLOW spr round 45 (radius: 5)
[07:34:57 -27967.682378] SLOW spr round 46 (radius: 10)
[07:36:20 -27926.237034] SLOW spr round 47 (radius: 5)
[07:37:58 -27872.734880] SLOW spr round 48 (radius: 5)
[07:39:25 -27852.598914] SLOW spr round 49 (radius: 5)
[07:40:46 -27848.756334] SLOW spr round 50 (radius: 5)
[07:42:03 -27848.756026] SLOW spr round 51 (radius: 10)
[07:43:19 -27782.725529] SLOW spr round 52 (radius: 5)
[07:44:54 -27724.031749] SLOW spr round 53 (radius: 5)
[07:46:16 -27721.038546] SLOW spr round 54 (radius: 5)
[07:47:32 -27721.038545] SLOW spr round 55 (radius: 10)
[07:48:47 -27721.038544] SLOW spr round 56 (radius: 15)
[07:50:35 -27721.038544] SLOW spr round 57 (radius: 20)
[07:52:53 -27721.038544] SLOW spr round 58 (radius: 25)
[07:55:26 -27717.643351] SLOW spr round 59 (radius: 5)
[07:57:05 -27712.276153] SLOW spr round 60 (radius: 5)
[07:58:32 -27712.153731] SLOW spr round 61 (radius: 5)
[07:59:50 -27712.153606] SLOW spr round 62 (radius: 10)
[08:01:08 -27708.131410] SLOW spr round 63 (radius: 5)
[08:02:39 -27707.994566] SLOW spr round 64 (radius: 5)
[08:03:59 -27707.994556] SLOW spr round 65 (radius: 10)
[08:05:16 -27707.994551] SLOW spr round 66 (radius: 15)
[08:07:04 -27707.994549] SLOW spr round 67 (radius: 20)
[08:09:24 -27695.194126] SLOW spr round 68 (radius: 5)
[08:10:57 -27695.192213] SLOW spr round 69 (radius: 10)
[08:12:24 -27695.191182] SLOW spr round 70 (radius: 15)
[08:14:08 -27695.190538] SLOW spr round 71 (radius: 20)
[08:16:28 -27695.190117] SLOW spr round 72 (radius: 25)
[08:19:00 -27695.089116] SLOW spr round 73 (radius: 5)
[08:20:35 -27694.836278] SLOW spr round 74 (radius: 5)
[08:21:58 -27694.836101] SLOW spr round 75 (radius: 10)
[08:23:15 -27694.836097] SLOW spr round 76 (radius: 15)
[08:25:02 -27694.836095] SLOW spr round 77 (radius: 20)
[08:27:22 -27694.836093] SLOW spr round 78 (radius: 25)
[08:29:55 -27694.836092] Model parameter optimization (eps = 0.100000)

[08:30:00] ML tree search #5, logLikelihood: -27694.822232

[08:30:00 -100975.435401] Initial branch length optimization
[08:30:01 -83506.222157] Model parameter optimization (eps = 10.000000)
[08:30:39 -83161.942318] AUTODETECT spr round 1 (radius: 5)
[08:31:47 -62306.718932] AUTODETECT spr round 2 (radius: 10)
[08:33:03 -47462.323225] AUTODETECT spr round 3 (radius: 15)
[08:34:29 -39482.907756] AUTODETECT spr round 4 (radius: 20)
[08:36:11 -34655.745474] AUTODETECT spr round 5 (radius: 25)
[08:38:11 -32577.144637] SPR radius for FAST iterations: 25 (autodetect)
[08:38:11 -32577.144637] Model parameter optimization (eps = 3.000000)
[08:38:26 -32475.960576] FAST spr round 1 (radius: 25)
[08:39:59 -28348.209030] FAST spr round 2 (radius: 25)
[08:41:11 -27960.253036] FAST spr round 3 (radius: 25)
[08:42:17 -27937.747601] FAST spr round 4 (radius: 25)
[08:43:20 -27927.962469] FAST spr round 5 (radius: 25)
[08:44:18 -27927.520784] FAST spr round 6 (radius: 25)
[08:45:16 -27927.520686] Model parameter optimization (eps = 1.000000)
[08:45:24 -27923.085564] SLOW spr round 1 (radius: 5)
[08:46:35 -27914.376877] SLOW spr round 2 (radius: 5)
[08:47:47 -27912.890557] SLOW spr round 3 (radius: 5)
[08:48:56 -27912.889953] SLOW spr round 4 (radius: 10)
[08:50:07 -27912.445165] SLOW spr round 5 (radius: 5)
[08:51:32 -27912.248997] SLOW spr round 6 (radius: 5)
[08:52:48 -27912.246791] SLOW spr round 7 (radius: 10)
[08:54:02 -27909.402189] SLOW spr round 8 (radius: 5)
[08:55:27 -27906.416579] SLOW spr round 9 (radius: 5)
[08:56:43 -27906.415937] SLOW spr round 10 (radius: 10)
[08:57:56 -27906.415870] SLOW spr round 11 (radius: 15)
[08:59:42 -27904.411078] SLOW spr round 12 (radius: 5)
[09:01:09 -27904.410092] SLOW spr round 13 (radius: 10)
[09:02:28 -27904.409985] SLOW spr round 14 (radius: 15)
[09:04:09 -27904.409920] SLOW spr round 15 (radius: 20)
[09:06:24 -27902.821322] SLOW spr round 16 (radius: 5)
[09:07:55 -27901.675281] SLOW spr round 17 (radius: 5)
[09:09:14 -27901.674666] SLOW spr round 18 (radius: 10)
[09:10:30 -27901.674575] SLOW spr round 19 (radius: 15)
[09:12:14 -27901.674508] SLOW spr round 20 (radius: 20)
[09:14:30 -27900.574819] SLOW spr round 21 (radius: 5)
[09:16:01 -27898.426460] SLOW spr round 22 (radius: 5)
[09:17:20 -27898.426153] SLOW spr round 23 (radius: 10)
[09:18:35 -27898.426072] SLOW spr round 24 (radius: 15)
[09:20:20 -27898.425999] SLOW spr round 25 (radius: 20)
[09:22:41 -27731.346567] SLOW spr round 26 (radius: 5)
[09:24:14 -27639.740410] SLOW spr round 27 (radius: 5)
[09:25:37 -27615.012547] SLOW spr round 28 (radius: 5)
[09:26:52 -27613.482237] SLOW spr round 29 (radius: 5)
[09:28:03 -27613.479532] SLOW spr round 30 (radius: 10)
[09:29:15 -27613.479514] SLOW spr round 31 (radius: 15)
[09:31:02 -27613.420735] SLOW spr round 32 (radius: 20)
[09:33:18 -27613.420731] SLOW spr round 33 (radius: 25)
[09:35:54 -27604.841398] SLOW spr round 34 (radius: 5)
[09:37:32 -27567.887454] SLOW spr round 35 (radius: 5)
[09:38:54 -27567.887350] SLOW spr round 36 (radius: 10)
[09:40:11 -27566.622046] SLOW spr round 37 (radius: 5)
[09:41:36 -27566.607332] SLOW spr round 38 (radius: 10)
[09:42:55 -27565.528180] SLOW spr round 39 (radius: 5)
[09:44:21 -27565.121032] SLOW spr round 40 (radius: 5)
[09:45:38 -27565.120819] SLOW spr round 41 (radius: 10)
[09:46:52 -27565.120804] SLOW spr round 42 (radius: 15)
[09:48:43 -27563.436506] SLOW spr round 43 (radius: 5)
[09:50:14 -27562.800752] SLOW spr round 44 (radius: 5)
[09:51:34 -27562.800725] SLOW spr round 45 (radius: 10)
[09:52:49 -27562.800724] SLOW spr round 46 (radius: 15)
[09:54:39 -27562.800724] SLOW spr round 47 (radius: 20)
[09:57:11 -27562.800724] SLOW spr round 48 (radius: 25)
[10:00:16 -27562.800723] Model parameter optimization (eps = 0.100000)

[10:00:21] ML tree search #6, logLikelihood: -27562.716976

[10:00:21 -100742.527731] Initial branch length optimization
[10:00:22 -83472.682474] Model parameter optimization (eps = 10.000000)
[10:00:49 -83081.509935] AUTODETECT spr round 1 (radius: 5)
[10:01:55 -63374.685691] AUTODETECT spr round 2 (radius: 10)
[10:03:12 -46780.324069] AUTODETECT spr round 3 (radius: 15)
[10:04:35 -38550.445501] AUTODETECT spr round 4 (radius: 20)
[10:06:14 -34862.685322] AUTODETECT spr round 5 (radius: 25)
[10:07:59 -33170.359880] SPR radius for FAST iterations: 25 (autodetect)
[10:07:59 -33170.359880] Model parameter optimization (eps = 3.000000)
[10:08:16 -33071.429625] FAST spr round 1 (radius: 25)
[10:09:45 -29099.367654] FAST spr round 2 (radius: 25)
[10:10:57 -28320.679631] FAST spr round 3 (radius: 25)
[10:12:02 -27894.521287] FAST spr round 4 (radius: 25)
[10:13:07 -27714.551232] FAST spr round 5 (radius: 25)
[10:14:07 -27710.208530] FAST spr round 6 (radius: 25)
[10:15:05 -27706.530151] FAST spr round 7 (radius: 25)
[10:16:02 -27706.528719] Model parameter optimization (eps = 1.000000)
[10:16:11 -27705.117200] SLOW spr round 1 (radius: 5)
[10:17:25 -27690.148506] SLOW spr round 2 (radius: 5)
[10:18:40 -27682.394107] SLOW spr round 3 (radius: 5)
[10:19:54 -27676.613997] SLOW spr round 4 (radius: 5)
[10:21:06 -27676.613447] SLOW spr round 5 (radius: 10)
[10:22:20 -27676.119829] SLOW spr round 6 (radius: 5)
[10:23:52 -27676.115550] SLOW spr round 7 (radius: 10)
[10:25:15 -27671.177315] SLOW spr round 8 (radius: 5)
[10:26:45 -27667.586894] SLOW spr round 9 (radius: 5)
[10:28:05 -27667.585009] SLOW spr round 10 (radius: 10)
[10:29:21 -27667.584625] SLOW spr round 11 (radius: 15)
[10:31:14 -27664.817924] SLOW spr round 12 (radius: 5)
[10:32:47 -27663.495180] SLOW spr round 13 (radius: 5)
[10:34:10 -27663.474459] SLOW spr round 14 (radius: 10)
[10:35:27 -27663.472871] SLOW spr round 15 (radius: 15)
[10:37:18 -27662.461986] SLOW spr round 16 (radius: 5)
[10:38:50 -27662.461689] SLOW spr round 17 (radius: 10)
[10:40:13 -27662.461594] SLOW spr round 18 (radius: 15)
[10:42:00 -27662.461568] SLOW spr round 19 (radius: 20)
[10:44:13 -27661.600598] SLOW spr round 20 (radius: 5)
[10:45:48 -27661.445195] SLOW spr round 21 (radius: 5)
[10:47:11 -27661.444927] SLOW spr round 22 (radius: 10)
[10:48:28 -27661.444883] SLOW spr round 23 (radius: 15)
[10:50:17 -27661.444871] SLOW spr round 24 (radius: 20)
[10:52:30 -27661.444870] SLOW spr round 25 (radius: 25)
[10:54:49 -27660.310962] SLOW spr round 26 (radius: 5)
[10:56:26 -27659.646845] SLOW spr round 27 (radius: 5)
[10:57:49 -27659.646445] SLOW spr round 28 (radius: 10)
[10:59:07 -27659.646421] SLOW spr round 29 (radius: 15)
[11:00:56 -27658.647950] SLOW spr round 30 (radius: 5)
[11:02:29 -27656.392890] SLOW spr round 31 (radius: 5)
[11:03:51 -27656.391816] SLOW spr round 32 (radius: 10)
[11:05:06 -27656.391755] SLOW spr round 33 (radius: 15)
[11:06:52 -27656.391748] SLOW spr round 34 (radius: 20)
[11:09:03 -27656.391747] SLOW spr round 35 (radius: 25)
[11:11:23 -27655.966969] SLOW spr round 36 (radius: 5)
[11:12:58 -27655.044097] SLOW spr round 37 (radius: 5)
[11:14:21 -27655.033556] SLOW spr round 38 (radius: 10)
[11:15:39 -27654.373990] SLOW spr round 39 (radius: 5)
[11:17:07 -27654.373874] SLOW spr round 40 (radius: 10)
[11:18:26 -27654.373855] SLOW spr round 41 (radius: 15)
[11:20:12 -27654.373852] SLOW spr round 42 (radius: 20)
[11:22:29 -27648.147734] SLOW spr round 43 (radius: 5)
[11:24:01 -27648.147733] SLOW spr round 44 (radius: 10)
[11:25:25 -27648.147733] SLOW spr round 45 (radius: 15)
[11:27:12 -27648.147733] SLOW spr round 46 (radius: 20)
[11:29:28 -27648.147733] SLOW spr round 47 (radius: 25)
[11:31:54 -27647.766204] SLOW spr round 48 (radius: 5)
[11:33:28 -27647.739036] SLOW spr round 49 (radius: 10)
[11:34:54 -27647.738480] SLOW spr round 50 (radius: 15)
[11:36:40 -27647.737924] SLOW spr round 51 (radius: 20)
[11:38:56 -27647.737367] SLOW spr round 52 (radius: 25)
[11:41:21 -27647.736804] Model parameter optimization (eps = 0.100000)

[11:41:25] ML tree search #7, logLikelihood: -27647.537288

[11:41:25 -100931.160395] Initial branch length optimization
[11:41:27 -83396.253588] Model parameter optimization (eps = 10.000000)
[11:41:57 -82988.570675] AUTODETECT spr round 1 (radius: 5)
[11:43:04 -63272.187954] AUTODETECT spr round 2 (radius: 10)
[11:44:22 -48548.981069] AUTODETECT spr round 3 (radius: 15)
[11:45:46 -39842.308147] AUTODETECT spr round 4 (radius: 20)
[11:47:26 -36050.787896] AUTODETECT spr round 5 (radius: 25)
[11:49:17 -34703.199669] SPR radius for FAST iterations: 25 (autodetect)
[11:49:17 -34703.199669] Model parameter optimization (eps = 3.000000)
[11:49:27 -34574.234077] FAST spr round 1 (radius: 25)
[11:50:56 -29628.029973] FAST spr round 2 (radius: 25)
[11:52:11 -28161.739865] FAST spr round 3 (radius: 25)
[11:53:20 -27806.721053] FAST spr round 4 (radius: 25)
[11:54:25 -27692.888420] FAST spr round 5 (radius: 25)
[11:55:26 -27686.330122] FAST spr round 6 (radius: 25)
[11:56:24 -27686.318908] Model parameter optimization (eps = 1.000000)
[11:56:34 -27677.317586] SLOW spr round 1 (radius: 5)
[11:57:46 -27661.002512] SLOW spr round 2 (radius: 5)
[11:59:00 -27655.971863] SLOW spr round 3 (radius: 5)
[12:00:13 -27652.340032] SLOW spr round 4 (radius: 5)
[12:01:25 -27652.339032] SLOW spr round 5 (radius: 10)
[12:02:39 -27651.342864] SLOW spr round 6 (radius: 5)
[12:04:08 -27650.971903] SLOW spr round 7 (radius: 5)
[12:05:28 -27650.971662] SLOW spr round 8 (radius: 10)
[12:06:44 -27650.971475] SLOW spr round 9 (radius: 15)
[12:08:33 -27605.129507] SLOW spr round 10 (radius: 5)
[12:10:08 -27598.856905] SLOW spr round 11 (radius: 5)
[12:11:32 -27597.656684] SLOW spr round 12 (radius: 5)
[12:12:49 -27597.491027] SLOW spr round 13 (radius: 5)
[12:14:04 -27595.885634] SLOW spr round 14 (radius: 5)
[12:15:18 -27595.487811] SLOW spr round 15 (radius: 5)
[12:16:29 -27595.486870] SLOW spr round 16 (radius: 10)
[12:17:45 -27559.431131] SLOW spr round 17 (radius: 5)
[12:19:19 -27548.684096] SLOW spr round 18 (radius: 5)
[12:20:42 -27547.103443] SLOW spr round 19 (radius: 5)
[12:21:57 -27547.091148] SLOW spr round 20 (radius: 10)
[12:23:11 -27547.091080] SLOW spr round 21 (radius: 15)
[12:25:03 -27546.940499] SLOW spr round 22 (radius: 5)
[12:26:35 -27546.940210] SLOW spr round 23 (radius: 10)
[12:27:59 -27546.940187] SLOW spr round 24 (radius: 15)
[12:29:45 -27546.940183] SLOW spr round 25 (radius: 20)
[12:32:15 -27545.587536] SLOW spr round 26 (radius: 5)
[12:33:48 -27545.352094] SLOW spr round 27 (radius: 5)
[12:35:11 -27543.586126] SLOW spr round 28 (radius: 5)
[12:36:27 -27543.079604] SLOW spr round 29 (radius: 5)
[12:37:39 -27543.079030] SLOW spr round 30 (radius: 10)
[12:38:52 -27543.078994] SLOW spr round 31 (radius: 15)
[12:40:41 -27542.239611] SLOW spr round 32 (radius: 5)
[12:42:10 -27542.238966] SLOW spr round 33 (radius: 10)
[12:43:32 -27542.238931] SLOW spr round 34 (radius: 15)
[12:45:16 -27542.238928] SLOW spr round 35 (radius: 20)
[12:47:42 -27542.238927] SLOW spr round 36 (radius: 25)
[12:50:44 -27528.315323] SLOW spr round 37 (radius: 5)
[12:52:21 -27525.209019] SLOW spr round 38 (radius: 5)
[12:53:45 -27522.379954] SLOW spr round 39 (radius: 5)
[12:55:01 -27522.379088] SLOW spr round 40 (radius: 10)
[12:56:16 -27522.095371] SLOW spr round 41 (radius: 5)
[12:57:43 -27522.095198] SLOW spr round 42 (radius: 10)
[12:59:04 -27522.095054] SLOW spr round 43 (radius: 15)
[13:00:50 -27522.094925] SLOW spr round 44 (radius: 20)
[13:03:16 -27522.015134] SLOW spr round 45 (radius: 25)
[13:06:14 -27522.013912] Model parameter optimization (eps = 0.100000)

[13:06:21] ML tree search #8, logLikelihood: -27521.724490

[13:06:21 -101276.334642] Initial branch length optimization
[13:06:22 -83782.244659] Model parameter optimization (eps = 10.000000)
[13:06:48 -83318.568526] AUTODETECT spr round 1 (radius: 5)
[13:07:57 -61886.755671] AUTODETECT spr round 2 (radius: 10)
[13:09:14 -46622.396191] AUTODETECT spr round 3 (radius: 15)
[13:10:37 -40276.300108] AUTODETECT spr round 4 (radius: 20)
[13:12:10 -37010.437018] AUTODETECT spr round 5 (radius: 25)
[13:13:48 -35274.704214] SPR radius for FAST iterations: 25 (autodetect)
[13:13:48 -35274.704214] Model parameter optimization (eps = 3.000000)
[13:13:59 -35180.599014] FAST spr round 1 (radius: 25)
[13:15:29 -29286.816598] FAST spr round 2 (radius: 25)
[13:16:43 -28007.536401] FAST spr round 3 (radius: 25)
[13:17:50 -27689.275570] FAST spr round 4 (radius: 25)
[13:18:54 -27674.282322] FAST spr round 5 (radius: 25)
[13:19:56 -27672.800371] FAST spr round 6 (radius: 25)
[13:20:54 -27672.798332] Model parameter optimization (eps = 1.000000)
[13:21:05 -27665.827857] SLOW spr round 1 (radius: 5)
[13:22:17 -27659.085579] SLOW spr round 2 (radius: 5)
[13:23:29 -27656.433304] SLOW spr round 3 (radius: 5)
[13:24:40 -27656.432334] SLOW spr round 4 (radius: 10)
[13:25:54 -27650.258846] SLOW spr round 5 (radius: 5)
[13:27:22 -27645.969637] SLOW spr round 6 (radius: 5)
[13:28:39 -27645.965576] SLOW spr round 7 (radius: 10)
[13:29:54 -27645.965561] SLOW spr round 8 (radius: 15)
[13:31:37 -27640.477534] SLOW spr round 9 (radius: 5)
[13:33:07 -27638.449722] SLOW spr round 10 (radius: 5)
[13:34:27 -27638.447398] SLOW spr round 11 (radius: 10)
[13:35:43 -27637.577762] SLOW spr round 12 (radius: 5)
[13:37:10 -27637.507194] SLOW spr round 13 (radius: 10)
[13:38:30 -27630.025958] SLOW spr round 14 (radius: 5)
[13:39:57 -27629.095082] SLOW spr round 15 (radius: 5)
[13:41:15 -27628.587806] SLOW spr round 16 (radius: 5)
[13:42:28 -27628.587487] SLOW spr round 17 (radius: 10)
[13:43:41 -27628.587481] SLOW spr round 18 (radius: 15)
[13:45:28 -27628.587481] SLOW spr round 19 (radius: 20)
[13:47:50 -27625.228035] SLOW spr round 20 (radius: 5)
[13:49:22 -27624.926640] SLOW spr round 21 (radius: 5)
[13:50:43 -27624.926573] SLOW spr round 22 (radius: 10)
[13:51:59 -27624.905051] SLOW spr round 23 (radius: 15)
[13:53:45 -27624.905036] SLOW spr round 24 (radius: 20)
[13:56:09 -27618.270205] SLOW spr round 25 (radius: 5)
[13:57:41 -27606.096330] SLOW spr round 26 (radius: 5)
[13:59:01 -27606.095859] SLOW spr round 27 (radius: 10)
[14:00:17 -27606.095841] SLOW spr round 28 (radius: 15)
[14:02:02 -27606.095839] SLOW spr round 29 (radius: 20)
[14:04:23 -27606.095839] SLOW spr round 30 (radius: 25)
[14:07:10 -27563.473896] SLOW spr round 31 (radius: 5)
[14:08:42 -27563.473884] SLOW spr round 32 (radius: 10)
[14:10:06 -27562.403155] SLOW spr round 33 (radius: 5)
[14:11:31 -27562.136830] SLOW spr round 34 (radius: 5)
[14:12:47 -27562.136814] SLOW spr round 35 (radius: 10)
[14:14:01 -27561.735716] SLOW spr round 36 (radius: 5)
[14:15:27 -27561.735660] SLOW spr round 37 (radius: 10)
[14:16:45 -27560.634751] SLOW spr round 38 (radius: 5)
[14:18:11 -27559.026897] SLOW spr round 39 (radius: 5)
[14:19:27 -27558.751990] SLOW spr round 40 (radius: 5)
[14:20:40 -27558.400201] SLOW spr round 41 (radius: 5)
[14:21:51 -27558.400192] SLOW spr round 42 (radius: 10)
[14:23:05 -27555.529989] SLOW spr round 43 (radius: 5)
[14:24:31 -27555.529977] SLOW spr round 44 (radius: 10)
[14:25:51 -27555.529977] SLOW spr round 45 (radius: 15)
[14:27:36 -27555.529977] SLOW spr round 46 (radius: 20)
[14:29:59 -27555.529977] SLOW spr round 47 (radius: 25)
[14:32:44 -27554.990980] SLOW spr round 48 (radius: 5)
[14:34:15 -27554.990951] SLOW spr round 49 (radius: 10)
[14:35:40 -27554.990949] SLOW spr round 50 (radius: 15)
[14:37:23 -27554.990940] SLOW spr round 51 (radius: 20)
[14:39:47 -27552.744976] SLOW spr round 52 (radius: 5)
[14:41:18 -27552.743889] SLOW spr round 53 (radius: 10)
[14:42:41 -27552.743776] SLOW spr round 54 (radius: 15)
[14:44:24 -27548.287725] SLOW spr round 55 (radius: 5)
[14:45:53 -27548.287714] SLOW spr round 56 (radius: 10)
[14:47:14 -27548.287714] SLOW spr round 57 (radius: 15)
[14:48:58 -27548.287714] SLOW spr round 58 (radius: 20)
[14:51:19 -27548.287714] SLOW spr round 59 (radius: 25)
[14:54:02 -27548.287714] Model parameter optimization (eps = 0.100000)

[14:54:08] ML tree search #9, logLikelihood: -27547.826536

[14:54:08 -100782.786865] Initial branch length optimization
[14:54:09 -83620.644271] Model parameter optimization (eps = 10.000000)
[14:54:37 -83261.112956] AUTODETECT spr round 1 (radius: 5)
[14:55:43 -61200.023909] AUTODETECT spr round 2 (radius: 10)
[14:57:01 -45847.521731] AUTODETECT spr round 3 (radius: 15)
[14:58:22 -39524.510498] AUTODETECT spr round 4 (radius: 20)
[14:59:52 -35862.331130] AUTODETECT spr round 5 (radius: 25)
[15:01:33 -33730.845872] SPR radius for FAST iterations: 25 (autodetect)
[15:01:33 -33730.845872] Model parameter optimization (eps = 3.000000)
[15:01:53 -33648.583869] FAST spr round 1 (radius: 25)
[15:03:23 -28864.224845] FAST spr round 2 (radius: 25)
[15:04:36 -28124.375199] FAST spr round 3 (radius: 25)
[15:05:42 -27985.881143] FAST spr round 4 (radius: 25)
[15:06:43 -27962.385671] FAST spr round 5 (radius: 25)
[15:07:41 -27960.118938] FAST spr round 6 (radius: 25)
[15:08:38 -27960.118265] Model parameter optimization (eps = 1.000000)
[15:08:45 -27958.818467] SLOW spr round 1 (radius: 5)
[15:09:58 -27950.220486] SLOW spr round 2 (radius: 5)
[15:11:09 -27949.126805] SLOW spr round 3 (radius: 5)
[15:12:19 -27948.911149] SLOW spr round 4 (radius: 5)
[15:13:28 -27948.910236] SLOW spr round 5 (radius: 10)
[15:14:40 -27947.276923] SLOW spr round 6 (radius: 5)
[15:16:07 -27947.258107] SLOW spr round 7 (radius: 10)
[15:17:29 -27944.154824] SLOW spr round 8 (radius: 5)
[15:18:53 -27944.153917] SLOW spr round 9 (radius: 10)
[15:20:11 -27944.153760] SLOW spr round 10 (radius: 15)
[15:21:51 -27943.334507] SLOW spr round 11 (radius: 5)
[15:23:20 -27943.332694] SLOW spr round 12 (radius: 10)
[15:24:43 -27940.557081] SLOW spr round 13 (radius: 5)
[15:26:07 -27940.320446] SLOW spr round 14 (radius: 5)
[15:27:25 -27938.721322] SLOW spr round 15 (radius: 5)
[15:28:37 -27938.721225] SLOW spr round 16 (radius: 10)
[15:29:49 -27938.721223] SLOW spr round 17 (radius: 15)
[15:31:33 -27938.187427] SLOW spr round 18 (radius: 5)
[15:33:03 -27936.778040] SLOW spr round 19 (radius: 5)
[15:34:24 -27930.174461] SLOW spr round 20 (radius: 5)
[15:35:38 -27930.174396] SLOW spr round 21 (radius: 10)
[15:36:51 -27930.174392] SLOW spr round 22 (radius: 15)
[15:38:35 -27929.862992] SLOW spr round 23 (radius: 5)
[15:40:04 -27929.862992] SLOW spr round 24 (radius: 10)
[15:41:26 -27929.862992] SLOW spr round 25 (radius: 15)
[15:43:05 -27929.862992] SLOW spr round 26 (radius: 20)
[15:45:31 -27800.060672] SLOW spr round 27 (radius: 5)
[15:47:11 -27605.988093] SLOW spr round 28 (radius: 5)
[15:48:35 -27593.235587] SLOW spr round 29 (radius: 5)
[15:49:54 -27591.807890] SLOW spr round 30 (radius: 5)
[15:51:07 -27591.807662] SLOW spr round 31 (radius: 10)
[15:52:25 -27582.814733] SLOW spr round 32 (radius: 5)
[15:53:56 -27581.803732] SLOW spr round 33 (radius: 5)
[15:55:15 -27581.803532] SLOW spr round 34 (radius: 10)
[15:56:31 -27581.803410] SLOW spr round 35 (radius: 15)
[15:58:23 -27577.320918] SLOW spr round 36 (radius: 5)
[15:59:56 -27576.076972] SLOW spr round 37 (radius: 5)
[16:01:16 -27576.074434] SLOW spr round 38 (radius: 10)
[16:02:32 -27575.927583] SLOW spr round 39 (radius: 5)
[16:03:58 -27574.880916] SLOW spr round 40 (radius: 5)
[16:05:16 -27574.880827] SLOW spr round 41 (radius: 10)
[16:06:30 -27574.880744] SLOW spr round 42 (radius: 15)
[16:08:20 -27574.880662] SLOW spr round 43 (radius: 20)
[16:10:53 -27569.619850] SLOW spr round 44 (radius: 5)
[16:12:28 -27568.544842] SLOW spr round 45 (radius: 5)
[16:13:51 -27568.479052] SLOW spr round 46 (radius: 10)
[16:15:08 -27568.477948] SLOW spr round 47 (radius: 15)
[16:16:57 -27568.477690] SLOW spr round 48 (radius: 20)
[16:19:32 -27568.477584] SLOW spr round 49 (radius: 25)
[16:22:48 -27549.420043] SLOW spr round 50 (radius: 5)
[16:24:24 -27545.252616] SLOW spr round 51 (radius: 5)
[16:25:49 -27544.890990] SLOW spr round 52 (radius: 5)
[16:27:07 -27544.583993] SLOW spr round 53 (radius: 5)
[16:28:21 -27544.579883] SLOW spr round 54 (radius: 10)
[16:29:35 -27543.142393] SLOW spr round 55 (radius: 5)
[16:31:04 -27542.935769] SLOW spr round 56 (radius: 5)
[16:32:24 -27542.935162] SLOW spr round 57 (radius: 10)
[16:33:39 -27542.525169] SLOW spr round 58 (radius: 5)
[16:35:08 -27542.521662] SLOW spr round 59 (radius: 10)
[16:36:27 -27542.520836] SLOW spr round 60 (radius: 15)
[16:38:15 -27541.414681] SLOW spr round 61 (radius: 5)
[16:39:46 -27541.414481] SLOW spr round 62 (radius: 10)
[16:41:08 -27541.414454] SLOW spr round 63 (radius: 15)
[16:42:53 -27541.414439] SLOW spr round 64 (radius: 20)
[16:45:34 -27531.976146] SLOW spr round 65 (radius: 5)
[16:47:08 -27531.976144] SLOW spr round 66 (radius: 10)
[16:48:35 -27531.976144] SLOW spr round 67 (radius: 15)
[16:50:23 -27531.976143] SLOW spr round 68 (radius: 20)
[16:53:06 -27531.976143] SLOW spr round 69 (radius: 25)
[16:56:28 -27531.722510] SLOW spr round 70 (radius: 5)
[16:58:03 -27531.722359] SLOW spr round 71 (radius: 10)
[16:59:33 -27530.396848] SLOW spr round 72 (radius: 5)
[17:01:02 -27530.076816] SLOW spr round 73 (radius: 5)
[17:02:21 -27530.076757] SLOW spr round 74 (radius: 10)
[17:03:36 -27530.076754] SLOW spr round 75 (radius: 15)
[17:05:28 -27530.076754] SLOW spr round 76 (radius: 20)
[17:08:06 -27530.076745] SLOW spr round 77 (radius: 25)
[17:11:27 -27529.940488] SLOW spr round 78 (radius: 5)
[17:13:03 -27529.940249] SLOW spr round 79 (radius: 10)
[17:14:31 -27529.940231] SLOW spr round 80 (radius: 15)
[17:16:17 -27529.940227] SLOW spr round 81 (radius: 20)
[17:18:54 -27529.940225] SLOW spr round 82 (radius: 25)
[17:22:14 -27529.940220] Model parameter optimization (eps = 0.100000)

[17:22:19] ML tree search #10, logLikelihood: -27529.782312

[17:22:19 -100174.111869] Initial branch length optimization
[17:22:20 -82566.411402] Model parameter optimization (eps = 10.000000)
[17:22:47 -82276.522120] AUTODETECT spr round 1 (radius: 5)
[17:23:54 -62267.751093] AUTODETECT spr round 2 (radius: 10)
[17:25:12 -45977.782611] AUTODETECT spr round 3 (radius: 15)
[17:26:36 -38238.948547] AUTODETECT spr round 4 (radius: 20)
[17:28:08 -35808.707454] AUTODETECT spr round 5 (radius: 25)
[17:29:52 -34243.275690] SPR radius for FAST iterations: 25 (autodetect)
[17:29:52 -34243.275690] Model parameter optimization (eps = 3.000000)
[17:30:04 -34178.428008] FAST spr round 1 (radius: 25)
[17:31:38 -28784.757902] FAST spr round 2 (radius: 25)
[17:32:52 -27972.171180] FAST spr round 3 (radius: 25)
[17:33:58 -27838.245329] FAST spr round 4 (radius: 25)
[17:35:01 -27677.155679] FAST spr round 5 (radius: 25)
[17:36:02 -27665.421430] FAST spr round 6 (radius: 25)
[17:37:01 -27664.678537] FAST spr round 7 (radius: 25)
[17:37:59 -27664.677963] Model parameter optimization (eps = 1.000000)
[17:38:06 -27661.710457] SLOW spr round 1 (radius: 5)
[17:39:20 -27651.670607] SLOW spr round 2 (radius: 5)
[17:40:34 -27649.872054] SLOW spr round 3 (radius: 5)
[17:41:45 -27649.871497] SLOW spr round 4 (radius: 10)
[17:43:00 -27647.912477] SLOW spr round 5 (radius: 5)
[17:44:29 -27645.854123] SLOW spr round 6 (radius: 5)
[17:45:48 -27645.853389] SLOW spr round 7 (radius: 10)
[17:47:03 -27644.602215] SLOW spr round 8 (radius: 5)
[17:48:32 -27644.573351] SLOW spr round 9 (radius: 10)
[17:49:50 -27644.572963] SLOW spr round 10 (radius: 15)
[17:51:31 -27639.495170] SLOW spr round 11 (radius: 5)
[17:53:03 -27639.475210] SLOW spr round 12 (radius: 10)
[17:54:25 -27639.391179] SLOW spr round 13 (radius: 15)
[17:56:04 -27639.391135] SLOW spr round 14 (radius: 20)
[17:58:14 -27636.208030] SLOW spr round 15 (radius: 5)
[17:59:51 -27614.062963] SLOW spr round 16 (radius: 5)
[18:01:16 -27611.776981] SLOW spr round 17 (radius: 5)
[18:02:33 -27609.997118] SLOW spr round 18 (radius: 5)
[18:03:46 -27609.995455] SLOW spr round 19 (radius: 10)
[18:05:01 -27604.582402] SLOW spr round 20 (radius: 5)
[18:06:31 -27601.790804] SLOW spr round 21 (radius: 5)
[18:07:53 -27600.931858] SLOW spr round 22 (radius: 5)
[18:09:09 -27600.931168] SLOW spr round 23 (radius: 10)
[18:10:22 -27600.931152] SLOW spr round 24 (radius: 15)
[18:12:04 -27600.931148] SLOW spr round 25 (radius: 20)
[18:14:08 -27600.931144] SLOW spr round 26 (radius: 25)
[18:16:41 -27592.447446] SLOW spr round 27 (radius: 5)
[18:18:15 -27572.550011] SLOW spr round 28 (radius: 5)
[18:19:37 -27570.193178] SLOW spr round 29 (radius: 5)
[18:20:53 -27570.193117] SLOW spr round 30 (radius: 10)
[18:22:06 -27570.193095] SLOW spr round 31 (radius: 15)
[18:23:47 -27567.361663] SLOW spr round 32 (radius: 5)
[18:25:16 -27567.137170] SLOW spr round 33 (radius: 5)
[18:26:35 -27567.136078] SLOW spr round 34 (radius: 10)
[18:27:50 -27567.135996] SLOW spr round 35 (radius: 15)
[18:29:29 -27567.135987] SLOW spr round 36 (radius: 20)
[18:31:33 -27567.135983] SLOW spr round 37 (radius: 25)
[18:34:03 -27567.135980] Model parameter optimization (eps = 0.100000)

[18:34:10] ML tree search #11, logLikelihood: -27566.011017

[18:34:10 -101595.181524] Initial branch length optimization
[18:34:12 -83951.038808] Model parameter optimization (eps = 10.000000)
[18:34:43 -83599.071568] AUTODETECT spr round 1 (radius: 5)
[18:35:50 -63541.751886] AUTODETECT spr round 2 (radius: 10)
[18:37:08 -46878.877420] AUTODETECT spr round 3 (radius: 15)
[18:38:33 -39836.977278] AUTODETECT spr round 4 (radius: 20)
[18:40:10 -35910.321756] AUTODETECT spr round 5 (radius: 25)
[18:42:14 -33634.758627] SPR radius for FAST iterations: 25 (autodetect)
[18:42:14 -33634.758627] Model parameter optimization (eps = 3.000000)
[18:42:24 -33530.981369] FAST spr round 1 (radius: 25)
[18:43:55 -29191.210192] FAST spr round 2 (radius: 25)
[18:45:05 -27969.638700] FAST spr round 3 (radius: 25)
[18:46:14 -27672.257001] FAST spr round 4 (radius: 25)
[18:47:21 -27613.110307] FAST spr round 5 (radius: 25)
[18:48:22 -27610.933592] FAST spr round 6 (radius: 25)
[18:49:24 -27604.324801] FAST spr round 7 (radius: 25)
[18:50:22 -27604.324672] Model parameter optimization (eps = 1.000000)
[18:50:28 -27603.415818] SLOW spr round 1 (radius: 5)
[18:51:39 -27595.530820] SLOW spr round 2 (radius: 5)
[18:52:51 -27594.887813] SLOW spr round 3 (radius: 5)
[18:54:02 -27594.883543] SLOW spr round 4 (radius: 10)
[18:55:19 -27581.405676] SLOW spr round 5 (radius: 5)
[18:56:49 -27579.945026] SLOW spr round 6 (radius: 5)
[18:58:10 -27579.633738] SLOW spr round 7 (radius: 5)
[18:59:26 -27578.270029] SLOW spr round 8 (radius: 5)
[19:00:38 -27578.219616] SLOW spr round 9 (radius: 10)
[19:01:52 -27576.359592] SLOW spr round 10 (radius: 5)
[19:03:21 -27572.948177] SLOW spr round 11 (radius: 5)
[19:04:41 -27572.947042] SLOW spr round 12 (radius: 10)
[19:05:55 -27572.946942] SLOW spr round 13 (radius: 15)
[19:07:43 -27570.115378] SLOW spr round 14 (radius: 5)
[19:09:14 -27570.112323] SLOW spr round 15 (radius: 10)
[19:10:36 -27568.428310] SLOW spr round 16 (radius: 5)
[19:12:01 -27568.422128] SLOW spr round 17 (radius: 10)
[19:13:19 -27568.422063] SLOW spr round 18 (radius: 15)
[19:15:03 -27568.422027] SLOW spr round 19 (radius: 20)
[19:17:26 -27566.967787] SLOW spr round 20 (radius: 5)
[19:18:57 -27566.536343] SLOW spr round 21 (radius: 5)
[19:20:17 -27566.536202] SLOW spr round 22 (radius: 10)
[19:21:33 -27566.536194] SLOW spr round 23 (radius: 15)
[19:23:17 -27566.536190] SLOW spr round 24 (radius: 20)
[19:25:40 -27566.536188] SLOW spr round 25 (radius: 25)
[19:28:45 -27561.860411] SLOW spr round 26 (radius: 5)
[19:30:18 -27561.857897] SLOW spr round 27 (radius: 10)
[19:31:41 -27561.857894] SLOW spr round 28 (radius: 15)
[19:33:23 -27561.857888] SLOW spr round 29 (radius: 20)
[19:35:46 -27561.857887] SLOW spr round 30 (radius: 25)
[19:38:48 -27561.857885] Model parameter optimization (eps = 0.100000)

[19:38:51] ML tree search #12, logLikelihood: -27561.812143

[19:38:52 -100394.670656] Initial branch length optimization
[19:38:53 -83155.533603] Model parameter optimization (eps = 10.000000)
[19:39:21 -82668.163739] AUTODETECT spr round 1 (radius: 5)
[19:40:27 -61238.259188] AUTODETECT spr round 2 (radius: 10)
[19:41:43 -47171.863717] AUTODETECT spr round 3 (radius: 15)
[19:43:07 -39909.310119] AUTODETECT spr round 4 (radius: 20)
[19:44:45 -36064.361151] AUTODETECT spr round 5 (radius: 25)
[19:46:42 -33316.599628] SPR radius for FAST iterations: 25 (autodetect)
[19:46:42 -33316.599628] Model parameter optimization (eps = 3.000000)
[19:46:59 -33193.061645] FAST spr round 1 (radius: 25)
[19:48:30 -28835.468166] FAST spr round 2 (radius: 25)
[19:49:45 -28182.653129] FAST spr round 3 (radius: 25)
[19:50:53 -27903.395520] FAST spr round 4 (radius: 25)
[19:51:59 -27777.080808] FAST spr round 5 (radius: 25)
[19:53:01 -27733.673831] FAST spr round 6 (radius: 25)
[19:53:59 -27730.654952] FAST spr round 7 (radius: 25)
[19:54:56 -27730.653460] Model parameter optimization (eps = 1.000000)
[19:55:01 -27729.859283] SLOW spr round 1 (radius: 5)
[19:56:14 -27725.582723] SLOW spr round 2 (radius: 5)
[19:57:28 -27723.059854] SLOW spr round 3 (radius: 5)
[19:58:41 -27722.575848] SLOW spr round 4 (radius: 5)
[19:59:52 -27722.575806] SLOW spr round 5 (radius: 10)
[20:01:06 -27721.089957] SLOW spr round 6 (radius: 5)
[20:02:36 -27721.085400] SLOW spr round 7 (radius: 10)
[20:03:58 -27720.745224] SLOW spr round 8 (radius: 5)
[20:05:27 -27720.742573] SLOW spr round 9 (radius: 10)
[20:06:47 -27720.742338] SLOW spr round 10 (radius: 15)
[20:08:35 -27718.283565] SLOW spr round 11 (radius: 5)
[20:10:09 -27717.670351] SLOW spr round 12 (radius: 5)
[20:11:31 -27717.669716] SLOW spr round 13 (radius: 10)
[20:12:47 -27717.669695] SLOW spr round 14 (radius: 15)
[20:14:36 -27717.047527] SLOW spr round 15 (radius: 5)
[20:16:10 -27716.735143] SLOW spr round 16 (radius: 5)
[20:17:32 -27715.022404] SLOW spr round 17 (radius: 5)
[20:18:48 -27715.022230] SLOW spr round 18 (radius: 10)
[20:20:03 -27714.901297] SLOW spr round 19 (radius: 5)
[20:21:32 -27714.901213] SLOW spr round 20 (radius: 10)
[20:22:52 -27714.901197] SLOW spr round 21 (radius: 15)
[20:24:39 -27714.583700] SLOW spr round 22 (radius: 5)
[20:26:11 -27714.583668] SLOW spr round 23 (radius: 10)
[20:27:35 -27714.583660] SLOW spr round 24 (radius: 15)
[20:29:20 -27714.583652] SLOW spr round 25 (radius: 20)
[20:31:41 -27710.674816] SLOW spr round 26 (radius: 5)
[20:33:19 -27660.940374] SLOW spr round 27 (radius: 5)
[20:34:43 -27660.938233] SLOW spr round 28 (radius: 10)
[20:36:01 -27660.937872] SLOW spr round 29 (radius: 15)
[20:37:51 -27660.253560] SLOW spr round 30 (radius: 5)
[20:39:28 -27656.351653] SLOW spr round 31 (radius: 5)
[20:40:52 -27656.349050] SLOW spr round 32 (radius: 10)
[20:42:10 -27656.348705] SLOW spr round 33 (radius: 15)
[20:43:59 -27656.348606] SLOW spr round 34 (radius: 20)
[20:46:26 -27655.871349] SLOW spr round 35 (radius: 5)
[20:48:03 -27655.692253] SLOW spr round 36 (radius: 5)
[20:49:27 -27655.689136] SLOW spr round 37 (radius: 10)
[20:50:46 -27655.687890] SLOW spr round 38 (radius: 15)
[20:52:36 -27655.687465] SLOW spr round 39 (radius: 20)
[20:55:02 -27655.687320] SLOW spr round 40 (radius: 25)
[20:58:06 -27604.094822] SLOW spr round 41 (radius: 5)
[20:59:44 -27600.430553] SLOW spr round 42 (radius: 5)
[21:01:10 -27600.097629] SLOW spr round 43 (radius: 5)
[21:02:28 -27600.097551] SLOW spr round 44 (radius: 10)
[21:03:44 -27600.097549] SLOW spr round 45 (radius: 15)
[21:05:37 -27600.097547] SLOW spr round 46 (radius: 20)
[21:08:04 -27600.097546] SLOW spr round 47 (radius: 25)
[21:11:09 -27600.097544] Model parameter optimization (eps = 0.100000)

[21:11:15] ML tree search #13, logLikelihood: -27599.887739

[21:11:15 -101606.188911] Initial branch length optimization
[21:11:16 -83950.539040] Model parameter optimization (eps = 10.000000)
[21:11:51 -83558.468148] AUTODETECT spr round 1 (radius: 5)
[21:12:59 -62686.098151] AUTODETECT spr round 2 (radius: 10)
[21:14:16 -47922.221367] AUTODETECT spr round 3 (radius: 15)
[21:15:41 -39925.575654] AUTODETECT spr round 4 (radius: 20)
[21:17:15 -36608.610124] AUTODETECT spr round 5 (radius: 25)
[21:19:11 -34971.499717] SPR radius for FAST iterations: 25 (autodetect)
[21:19:11 -34971.499717] Model parameter optimization (eps = 3.000000)
[21:19:28 -34885.973541] FAST spr round 1 (radius: 25)
[21:21:01 -28331.087566] FAST spr round 2 (radius: 25)
[21:22:13 -27650.851991] FAST spr round 3 (radius: 25)
[21:23:18 -27599.015418] FAST spr round 4 (radius: 25)
[21:24:20 -27585.248868] FAST spr round 5 (radius: 25)
[21:25:18 -27583.555960] FAST spr round 6 (radius: 25)
[21:26:15 -27583.555447] Model parameter optimization (eps = 1.000000)
[21:26:21 -27581.313623] SLOW spr round 1 (radius: 5)
[21:27:34 -27572.270290] SLOW spr round 2 (radius: 5)
[21:28:47 -27565.808623] SLOW spr round 3 (radius: 5)
[21:29:58 -27565.766749] SLOW spr round 4 (radius: 10)
[21:31:13 -27563.277230] SLOW spr round 5 (radius: 5)
[21:32:43 -27562.493628] SLOW spr round 6 (radius: 5)
[21:34:02 -27562.493547] SLOW spr round 7 (radius: 10)
[21:35:18 -27562.493497] SLOW spr round 8 (radius: 15)
[21:37:10 -27562.432859] SLOW spr round 9 (radius: 20)
[21:39:31 -27552.784538] SLOW spr round 10 (radius: 5)
[21:41:09 -27549.651280] SLOW spr round 11 (radius: 5)
[21:42:33 -27549.647623] SLOW spr round 12 (radius: 10)
[21:43:54 -27542.043061] SLOW spr round 13 (radius: 5)
[21:45:25 -27540.326509] SLOW spr round 14 (radius: 5)
[21:46:46 -27540.325480] SLOW spr round 15 (radius: 10)
[21:48:03 -27540.325273] SLOW spr round 16 (radius: 15)
[21:49:59 -27540.325100] SLOW spr round 17 (radius: 20)
[21:52:20 -27533.332860] SLOW spr round 18 (radius: 5)
[21:53:57 -27533.332566] SLOW spr round 19 (radius: 10)
[21:55:25 -27533.332444] SLOW spr round 20 (radius: 15)
[21:57:17 -27533.332336] SLOW spr round 21 (radius: 20)
[21:59:39 -27533.332238] SLOW spr round 22 (radius: 25)
[22:02:23 -27527.544553] SLOW spr round 23 (radius: 5)
[22:04:01 -27518.202195] SLOW spr round 24 (radius: 5)
[22:05:26 -27518.153918] SLOW spr round 25 (radius: 10)
[22:06:44 -27518.153701] SLOW spr round 26 (radius: 15)
[22:08:36 -27516.622892] SLOW spr round 27 (radius: 5)
[22:10:10 -27513.233228] SLOW spr round 28 (radius: 5)
[22:11:36 -27512.624621] SLOW spr round 29 (radius: 5)
[22:12:52 -27512.624198] SLOW spr round 30 (radius: 10)
[22:14:07 -27512.623980] SLOW spr round 31 (radius: 15)
[22:16:00 -27512.623774] SLOW spr round 32 (radius: 20)
[22:18:16 -27512.623576] SLOW spr round 33 (radius: 25)
[22:20:56 -27512.623368] Model parameter optimization (eps = 0.100000)

[22:20:59] ML tree search #14, logLikelihood: -27512.520379

[22:20:59 -100618.237426] Initial branch length optimization
[22:21:01 -83218.524715] Model parameter optimization (eps = 10.000000)
[22:21:30 -82767.604262] AUTODETECT spr round 1 (radius: 5)
[22:22:38 -63239.198529] AUTODETECT spr round 2 (radius: 10)
[22:23:55 -46613.858196] AUTODETECT spr round 3 (radius: 15)
[22:25:21 -40499.710568] AUTODETECT spr round 4 (radius: 20)
[22:26:50 -39061.293779] AUTODETECT spr round 5 (radius: 25)
[22:28:27 -37355.337119] SPR radius for FAST iterations: 25 (autodetect)
[22:28:27 -37355.337119] Model parameter optimization (eps = 3.000000)
[22:28:40 -37243.839107] FAST spr round 1 (radius: 25)
[22:30:09 -32624.941816] FAST spr round 2 (radius: 25)
[22:31:30 -29145.029677] FAST spr round 3 (radius: 25)
[22:32:43 -27984.055641] FAST spr round 4 (radius: 25)
[22:33:50 -27654.701397] FAST spr round 5 (radius: 25)
[22:34:55 -27642.754171] FAST spr round 6 (radius: 25)
[22:35:57 -27639.650525] FAST spr round 7 (radius: 25)
[22:36:56 -27638.288364] FAST spr round 8 (radius: 25)
[22:37:54 -27638.288265] Model parameter optimization (eps = 1.000000)
[22:38:01 -27636.654414] SLOW spr round 1 (radius: 5)
[22:39:16 -27631.523259] SLOW spr round 2 (radius: 5)
[22:40:31 -27630.518097] SLOW spr round 3 (radius: 5)
[22:41:45 -27630.102181] SLOW spr round 4 (radius: 5)
[22:42:59 -27629.805123] SLOW spr round 5 (radius: 5)
[22:44:11 -27629.804359] SLOW spr round 6 (radius: 10)
[22:45:28 -27621.550312] SLOW spr round 7 (radius: 5)
[22:47:01 -27620.106991] SLOW spr round 8 (radius: 5)
[22:48:23 -27620.073002] SLOW spr round 9 (radius: 10)
[22:49:40 -27620.072340] SLOW spr round 10 (radius: 15)
[22:51:34 -27620.072188] SLOW spr round 11 (radius: 20)
[22:54:03 -27620.072108] SLOW spr round 12 (radius: 25)
[22:56:59 -27618.479285] SLOW spr round 13 (radius: 5)
[22:58:33 -27618.474286] SLOW spr round 14 (radius: 10)
[23:00:00 -27617.756564] SLOW spr round 15 (radius: 5)
[23:01:28 -27617.754931] SLOW spr round 16 (radius: 10)
[23:02:47 -27617.754496] SLOW spr round 17 (radius: 15)
[23:04:38 -27617.754196] SLOW spr round 18 (radius: 20)
[23:07:04 -27617.753808] SLOW spr round 19 (radius: 25)
[23:09:55 -27617.753478] Model parameter optimization (eps = 0.100000)

[23:09:57] ML tree search #15, logLikelihood: -27617.747359

[23:09:57 -101217.300077] Initial branch length optimization
[23:09:58 -83808.513761] Model parameter optimization (eps = 10.000000)
[23:10:20 -83408.473674] AUTODETECT spr round 1 (radius: 5)
[23:11:26 -61243.431452] AUTODETECT spr round 2 (radius: 10)
[23:12:43 -45181.464099] AUTODETECT spr round 3 (radius: 15)
[23:14:04 -40651.881228] AUTODETECT spr round 4 (radius: 20)
[23:15:31 -37222.154253] AUTODETECT spr round 5 (radius: 25)
[23:17:14 -34143.603810] SPR radius for FAST iterations: 25 (autodetect)
[23:17:14 -34143.603810] Model parameter optimization (eps = 3.000000)
[23:17:26 -34050.679512] FAST spr round 1 (radius: 25)
[23:18:55 -29075.722140] FAST spr round 2 (radius: 25)
[23:20:14 -28039.752606] FAST spr round 3 (radius: 25)
[23:21:23 -27681.036076] FAST spr round 4 (radius: 25)
[23:22:26 -27561.093901] FAST spr round 5 (radius: 25)
[23:23:28 -27549.034085] FAST spr round 6 (radius: 25)
[23:24:26 -27549.033999] Model parameter optimization (eps = 1.000000)
[23:24:33 -27539.806075] SLOW spr round 1 (radius: 5)
[23:25:46 -27534.910460] SLOW spr round 2 (radius: 5)
[23:26:58 -27534.873787] SLOW spr round 3 (radius: 10)
[23:28:10 -27534.873115] SLOW spr round 4 (radius: 15)
[23:30:06 -27530.598605] SLOW spr round 5 (radius: 5)
[23:31:39 -27530.015038] SLOW spr round 6 (radius: 5)
[23:33:01 -27530.014752] SLOW spr round 7 (radius: 10)
[23:34:17 -27529.309076] SLOW spr round 8 (radius: 5)
[23:35:44 -27529.309009] SLOW spr round 9 (radius: 10)
[23:37:03 -27529.309003] SLOW spr round 10 (radius: 15)
[23:38:53 -27529.308999] SLOW spr round 11 (radius: 20)
[23:41:38 -27524.431162] SLOW spr round 12 (radius: 5)
[23:43:12 -27524.179214] SLOW spr round 13 (radius: 5)
[23:44:35 -27523.747365] SLOW spr round 14 (radius: 5)
[23:45:52 -27523.747255] SLOW spr round 15 (radius: 10)
[23:47:06 -27523.747237] SLOW spr round 16 (radius: 15)
[23:49:00 -27523.747226] SLOW spr round 17 (radius: 20)
[23:51:41 -27523.747222] SLOW spr round 18 (radius: 25)
[23:55:08 -27519.051839] SLOW spr round 19 (radius: 5)
[23:56:43 -27506.587771] SLOW spr round 20 (radius: 5)
[23:58:06 -27506.587696] SLOW spr round 21 (radius: 10)
[23:59:22 -27506.587690] SLOW spr round 22 (radius: 15)
[24:01:14 -27506.587689] SLOW spr round 23 (radius: 20)
[24:03:57 -27506.587688] SLOW spr round 24 (radius: 25)
[24:07:22 -27504.879595] SLOW spr round 25 (radius: 5)
[24:08:55 -27504.878638] SLOW spr round 26 (radius: 10)
[24:10:20 -27504.878600] SLOW spr round 27 (radius: 15)
[24:12:08 -27504.878597] SLOW spr round 28 (radius: 20)
[24:14:52 -27504.878597] SLOW spr round 29 (radius: 25)
[24:18:16 -27504.828678] Model parameter optimization (eps = 0.100000)

[24:18:19] ML tree search #16, logLikelihood: -27504.777068

[24:18:19 -100345.710866] Initial branch length optimization
[24:18:20 -82847.510784] Model parameter optimization (eps = 10.000000)
[24:18:47 -82532.460550] AUTODETECT spr round 1 (radius: 5)
[24:19:54 -60644.815455] AUTODETECT spr round 2 (radius: 10)
[24:21:09 -46274.590283] AUTODETECT spr round 3 (radius: 15)
[24:22:31 -39540.918331] AUTODETECT spr round 4 (radius: 20)
[24:24:02 -36842.979963] AUTODETECT spr round 5 (radius: 25)
[24:25:37 -34073.426824] SPR radius for FAST iterations: 25 (autodetect)
[24:25:37 -34073.426824] Model parameter optimization (eps = 3.000000)
[24:25:49 -33989.792376] FAST spr round 1 (radius: 25)
[24:27:21 -29265.177844] FAST spr round 2 (radius: 25)
[24:28:34 -28642.758617] FAST spr round 3 (radius: 25)
[24:29:41 -28555.957326] FAST spr round 4 (radius: 25)
[24:30:45 -28546.206516] FAST spr round 5 (radius: 25)
[24:31:47 -28537.346184] FAST spr round 6 (radius: 25)
[24:32:47 -28532.680712] FAST spr round 7 (radius: 25)
[24:33:45 -28532.674398] Model parameter optimization (eps = 1.000000)
[24:33:52 -28527.233117] SLOW spr round 1 (radius: 5)
[24:35:05 -28521.921415] SLOW spr round 2 (radius: 5)
[24:36:19 -28521.387660] SLOW spr round 3 (radius: 5)
[24:37:33 -28519.581231] SLOW spr round 4 (radius: 5)
[24:38:45 -28517.777812] SLOW spr round 5 (radius: 5)
[24:39:56 -28517.775956] SLOW spr round 6 (radius: 10)
[24:41:10 -28513.117800] SLOW spr round 7 (radius: 5)
[24:42:39 -28510.878957] SLOW spr round 8 (radius: 5)
[24:43:59 -28510.877069] SLOW spr round 9 (radius: 10)
[24:45:14 -28510.259868] SLOW spr round 10 (radius: 5)
[24:46:40 -28510.196620] SLOW spr round 11 (radius: 10)
[24:47:59 -28510.144214] SLOW spr round 12 (radius: 15)
[24:49:42 -28505.882865] SLOW spr round 13 (radius: 5)
[24:51:13 -28504.670825] SLOW spr round 14 (radius: 5)
[24:52:33 -28504.667585] SLOW spr round 15 (radius: 10)
[24:53:49 -28504.666960] SLOW spr round 16 (radius: 15)
[24:55:32 -28504.666821] SLOW spr round 17 (radius: 20)
[24:57:53 -28504.666798] SLOW spr round 18 (radius: 25)
[25:00:35 -28498.585560] SLOW spr round 19 (radius: 5)
[25:02:06 -28497.256490] SLOW spr round 20 (radius: 5)
[25:03:30 -28496.463002] SLOW spr round 21 (radius: 5)
[25:04:46 -28496.461988] SLOW spr round 22 (radius: 10)
[25:06:00 -28495.947944] SLOW spr round 23 (radius: 5)
[25:07:25 -28495.947655] SLOW spr round 24 (radius: 10)
[25:08:45 -28495.947603] SLOW spr round 25 (radius: 15)
[25:10:34 -28470.931597] SLOW spr round 26 (radius: 5)
[25:12:07 -28470.223860] SLOW spr round 27 (radius: 5)
[25:13:27 -28470.222981] SLOW spr round 28 (radius: 10)
[25:14:43 -28465.789394] SLOW spr round 29 (radius: 5)
[25:16:10 -28464.459320] SLOW spr round 30 (radius: 5)
[25:17:34 -28464.168173] SLOW spr round 31 (radius: 5)
[25:18:48 -28464.162163] SLOW spr round 32 (radius: 10)
[25:20:01 -28464.162135] SLOW spr round 33 (radius: 15)
[25:21:50 -28427.303415] SLOW spr round 34 (radius: 5)
[25:23:23 -28234.600996] SLOW spr round 35 (radius: 5)
[25:24:48 -28211.873795] SLOW spr round 36 (radius: 5)
[25:26:07 -28130.167714] SLOW spr round 37 (radius: 5)
[25:27:24 -28053.140599] SLOW spr round 38 (radius: 5)
[25:28:38 -28044.098597] SLOW spr round 39 (radius: 5)
[25:29:51 -28041.085452] SLOW spr round 40 (radius: 5)
[25:31:01 -28041.084519] SLOW spr round 41 (radius: 10)
[25:32:13 -28040.923826] SLOW spr round 42 (radius: 5)
[25:33:41 -28040.923773] SLOW spr round 43 (radius: 10)
[25:35:01 -28040.923772] SLOW spr round 44 (radius: 15)
[25:36:46 -28040.923771] SLOW spr round 45 (radius: 20)
[25:39:13 -28040.923770] SLOW spr round 46 (radius: 25)
[25:42:00 -28031.438508] SLOW spr round 47 (radius: 5)
[25:43:34 -28031.353794] SLOW spr round 48 (radius: 10)
[25:44:59 -28031.353669] SLOW spr round 49 (radius: 15)
[25:46:42 -28031.353668] SLOW spr round 50 (radius: 20)
[25:49:08 -28031.353667] SLOW spr round 51 (radius: 25)
[25:51:53 -28031.353667] Model parameter optimization (eps = 0.100000)

[25:51:59] ML tree search #17, logLikelihood: -28030.702137

[25:51:59 -101213.279907] Initial branch length optimization
[25:52:01 -83505.268280] Model parameter optimization (eps = 10.000000)
[25:52:29 -83151.241460] AUTODETECT spr round 1 (radius: 5)
[25:53:36 -62000.386947] AUTODETECT spr round 2 (radius: 10)
[25:54:52 -45545.024467] AUTODETECT spr round 3 (radius: 15)
[25:56:16 -38292.029721] AUTODETECT spr round 4 (radius: 20)
[25:57:55 -35687.634864] AUTODETECT spr round 5 (radius: 25)
[25:59:36 -34354.299480] SPR radius for FAST iterations: 25 (autodetect)
[25:59:36 -34354.299480] Model parameter optimization (eps = 3.000000)
[25:59:50 -34268.451493] FAST spr round 1 (radius: 25)
[26:01:21 -30172.949355] FAST spr round 2 (radius: 25)
[26:02:40 -28182.024097] FAST spr round 3 (radius: 25)
[26:03:47 -27694.470550] FAST spr round 4 (radius: 25)
[26:04:49 -27625.073753] FAST spr round 5 (radius: 25)
[26:05:48 -27620.076691] FAST spr round 6 (radius: 25)
[26:06:44 -27620.075795] Model parameter optimization (eps = 1.000000)
[26:06:48 -27619.748771] SLOW spr round 1 (radius: 5)
[26:08:02 -27614.280510] SLOW spr round 2 (radius: 5)
[26:09:15 -27612.880182] SLOW spr round 3 (radius: 5)
[26:10:26 -27612.802246] SLOW spr round 4 (radius: 10)
[26:11:41 -27610.736662] SLOW spr round 5 (radius: 5)
[26:13:11 -27610.237220] SLOW spr round 6 (radius: 5)
[26:14:30 -27610.236944] SLOW spr round 7 (radius: 10)
[26:15:46 -27610.236670] SLOW spr round 8 (radius: 15)
[26:17:43 -27609.302005] SLOW spr round 9 (radius: 5)
[26:19:16 -27608.849546] SLOW spr round 10 (radius: 5)
[26:20:38 -27608.580801] SLOW spr round 11 (radius: 5)
[26:21:54 -27608.580083] SLOW spr round 12 (radius: 10)
[26:23:09 -27595.200958] SLOW spr round 13 (radius: 5)
[26:24:41 -27593.314304] SLOW spr round 14 (radius: 5)
[26:26:01 -27593.312118] SLOW spr round 15 (radius: 10)
[26:27:18 -27593.311786] SLOW spr round 16 (radius: 15)
[26:29:15 -27593.311686] SLOW spr round 17 (radius: 20)
[26:31:59 -27592.783634] SLOW spr round 18 (radius: 5)
[26:33:34 -27592.778023] SLOW spr round 19 (radius: 10)
[26:35:01 -27592.777993] SLOW spr round 20 (radius: 15)
[26:36:52 -27592.777964] SLOW spr round 21 (radius: 20)
[26:39:37 -27592.777937] SLOW spr round 22 (radius: 25)
[26:42:57 -27545.295144] SLOW spr round 23 (radius: 5)
[26:44:39 -27536.722640] SLOW spr round 24 (radius: 5)
[26:46:08 -27534.825295] SLOW spr round 25 (radius: 5)
[26:47:29 -27533.859407] SLOW spr round 26 (radius: 5)
[26:48:45 -27533.712984] SLOW spr round 27 (radius: 5)
[26:49:58 -27533.712166] SLOW spr round 28 (radius: 10)
[26:51:14 -27533.254811] SLOW spr round 29 (radius: 5)
[26:52:46 -27533.253203] SLOW spr round 30 (radius: 10)
[26:54:10 -27533.252966] SLOW spr round 31 (radius: 15)
[26:56:09 -27533.169860] SLOW spr round 32 (radius: 20)
[26:59:05 -27532.916188] SLOW spr round 33 (radius: 5)
[27:00:43 -27532.039143] SLOW spr round 34 (radius: 5)
[27:02:08 -27532.036023] SLOW spr round 35 (radius: 10)
[27:03:27 -27532.035977] SLOW spr round 36 (radius: 15)
[27:05:28 -27532.035966] SLOW spr round 37 (radius: 20)
[27:08:23 -27532.035955] SLOW spr round 38 (radius: 25)
[27:11:37 -27528.583078] SLOW spr round 39 (radius: 5)
[27:13:18 -27525.904240] SLOW spr round 40 (radius: 5)
[27:14:44 -27525.903408] SLOW spr round 41 (radius: 10)
[27:16:04 -27525.903175] SLOW spr round 42 (radius: 15)
[27:18:05 -27525.903075] SLOW spr round 43 (radius: 20)
[27:20:59 -27525.147417] SLOW spr round 44 (radius: 5)
[27:22:36 -27525.146086] SLOW spr round 45 (radius: 10)
[27:24:04 -27525.145978] SLOW spr round 46 (radius: 15)
[27:26:01 -27525.145951] SLOW spr round 47 (radius: 20)
[27:28:57 -27525.145942] SLOW spr round 48 (radius: 25)
[27:32:09 -27525.145934] Model parameter optimization (eps = 0.100000)

[27:32:14] ML tree search #18, logLikelihood: -27524.653766

[27:32:14 -100257.560239] Initial branch length optimization
[27:32:16 -83164.250839] Model parameter optimization (eps = 10.000000)
[27:32:52 -82812.211027] AUTODETECT spr round 1 (radius: 5)
[27:33:59 -62016.218468] AUTODETECT spr round 2 (radius: 10)
[27:35:16 -45176.657417] AUTODETECT spr round 3 (radius: 15)
[27:36:39 -35883.814174] AUTODETECT spr round 4 (radius: 20)
[27:38:21 -32745.291219] AUTODETECT spr round 5 (radius: 25)
[27:39:58 -31678.341120] SPR radius for FAST iterations: 25 (autodetect)
[27:39:58 -31678.341120] Model parameter optimization (eps = 3.000000)
[27:40:10 -31602.301819] FAST spr round 1 (radius: 25)
[27:41:37 -28162.336365] FAST spr round 2 (radius: 25)
[27:42:49 -27898.658282] FAST spr round 3 (radius: 25)
[27:43:53 -27801.757942] FAST spr round 4 (radius: 25)
[27:44:54 -27798.244021] FAST spr round 5 (radius: 25)
[27:45:53 -27797.126475] FAST spr round 6 (radius: 25)
[27:46:50 -27797.122821] Model parameter optimization (eps = 1.000000)
[27:46:57 -27793.659261] SLOW spr round 1 (radius: 5)
[27:48:07 -27786.609117] SLOW spr round 2 (radius: 5)
[27:49:17 -27786.604602] SLOW spr round 3 (radius: 10)
[27:50:28 -27783.995550] SLOW spr round 4 (radius: 5)
[27:51:51 -27783.345305] SLOW spr round 5 (radius: 5)
[27:53:07 -27783.344998] SLOW spr round 6 (radius: 10)
[27:54:20 -27783.196177] SLOW spr round 7 (radius: 5)
[27:55:42 -27783.153055] SLOW spr round 8 (radius: 10)
[27:56:58 -27782.653851] SLOW spr round 9 (radius: 5)
[27:58:20 -27782.652470] SLOW spr round 10 (radius: 10)
[27:59:35 -27782.652426] SLOW spr round 11 (radius: 15)
[28:01:12 -27778.454693] SLOW spr round 12 (radius: 5)
[28:02:37 -27778.452543] SLOW spr round 13 (radius: 10)
[28:03:56 -27778.452191] SLOW spr round 14 (radius: 15)
[28:05:31 -27778.452104] SLOW spr round 15 (radius: 20)
[28:07:33 -27756.202505] SLOW spr round 16 (radius: 5)
[28:09:04 -27750.421640] SLOW spr round 17 (radius: 5)
[28:10:26 -27747.787487] SLOW spr round 18 (radius: 5)
[28:11:41 -27747.786419] SLOW spr round 19 (radius: 10)
[28:12:54 -27743.890310] SLOW spr round 20 (radius: 5)
[28:14:17 -27743.890266] SLOW spr round 21 (radius: 10)
[28:15:34 -27743.890247] SLOW spr round 22 (radius: 15)
[28:17:10 -27743.890234] SLOW spr round 23 (radius: 20)
[28:19:08 -27743.311940] SLOW spr round 24 (radius: 5)
[28:20:40 -27741.806821] SLOW spr round 25 (radius: 5)
[28:22:02 -27740.751422] SLOW spr round 26 (radius: 5)
[28:23:18 -27740.707362] SLOW spr round 27 (radius: 10)
[28:24:30 -27740.707076] SLOW spr round 28 (radius: 15)
[28:26:08 -27740.706856] SLOW spr round 29 (radius: 20)
[28:28:04 -27740.605362] SLOW spr round 30 (radius: 5)
[28:29:34 -27740.605073] SLOW spr round 31 (radius: 10)
[28:30:56 -27740.604847] SLOW spr round 32 (radius: 15)
[28:32:30 -27740.604619] SLOW spr round 33 (radius: 20)
[28:34:26 -27740.604389] SLOW spr round 34 (radius: 25)
[28:36:35 -27736.712483] SLOW spr round 35 (radius: 5)
[28:38:06 -27736.711573] SLOW spr round 36 (radius: 10)
[28:39:28 -27736.711509] SLOW spr round 37 (radius: 15)
[28:41:02 -27736.711503] SLOW spr round 38 (radius: 20)
[28:42:58 -27736.711498] SLOW spr round 39 (radius: 25)
[28:45:07 -27736.711491] Model parameter optimization (eps = 0.100000)

[28:45:12] ML tree search #19, logLikelihood: -27736.397658

[28:45:12 -100854.683054] Initial branch length optimization
[28:45:13 -83480.691615] Model parameter optimization (eps = 10.000000)
[28:45:53 -83152.605738] AUTODETECT spr round 1 (radius: 5)
[28:47:00 -61826.699084] AUTODETECT spr round 2 (radius: 10)
[28:48:19 -46426.033825] AUTODETECT spr round 3 (radius: 15)
[28:49:40 -40648.832433] AUTODETECT spr round 4 (radius: 20)
[28:51:15 -35915.714969] AUTODETECT spr round 5 (radius: 25)
[28:53:02 -33376.415790] SPR radius for FAST iterations: 25 (autodetect)
[28:53:02 -33376.415790] Model parameter optimization (eps = 3.000000)
[28:53:12 -33284.934851] FAST spr round 1 (radius: 25)
[28:54:47 -29077.844369] FAST spr round 2 (radius: 25)
[28:56:02 -28276.182879] FAST spr round 3 (radius: 25)
[28:57:13 -27977.143961] FAST spr round 4 (radius: 25)
[28:58:17 -27964.850056] FAST spr round 5 (radius: 25)
[28:59:16 -27964.263240] FAST spr round 6 (radius: 25)
[29:00:15 -27964.139493] FAST spr round 7 (radius: 25)
[29:01:13 -27964.138517] Model parameter optimization (eps = 1.000000)
[29:01:21 -27959.613325] SLOW spr round 1 (radius: 5)
[29:02:32 -27947.420019] SLOW spr round 2 (radius: 5)
[29:03:43 -27946.748231] SLOW spr round 3 (radius: 5)
[29:04:52 -27946.747368] SLOW spr round 4 (radius: 10)
[29:06:04 -27942.638672] SLOW spr round 5 (radius: 5)
[29:07:32 -27940.648391] SLOW spr round 6 (radius: 5)
[29:08:49 -27940.648345] SLOW spr round 7 (radius: 10)
[29:10:02 -27940.648320] SLOW spr round 8 (radius: 15)
[29:11:57 -27854.177035] SLOW spr round 9 (radius: 5)
[29:13:30 -27831.455152] SLOW spr round 10 (radius: 5)
[29:14:57 -27824.208752] SLOW spr round 11 (radius: 5)
[29:16:16 -27822.086421] SLOW spr round 12 (radius: 5)
[29:17:30 -27821.867114] SLOW spr round 13 (radius: 5)
[29:18:41 -27821.866332] SLOW spr round 14 (radius: 10)
[29:19:54 -27815.044373] SLOW spr round 15 (radius: 5)
[29:21:21 -27813.318388] SLOW spr round 16 (radius: 5)
[29:22:38 -27813.318148] SLOW spr round 17 (radius: 10)
[29:23:53 -27813.318116] SLOW spr round 18 (radius: 15)
[29:25:36 -27812.871887] SLOW spr round 19 (radius: 5)
[29:27:05 -27812.871329] SLOW spr round 20 (radius: 10)
[29:28:30 -27810.753725] SLOW spr round 21 (radius: 5)
[29:29:59 -27810.753656] SLOW spr round 22 (radius: 10)
[29:31:21 -27810.753619] SLOW spr round 23 (radius: 15)
[29:33:05 -27810.753585] SLOW spr round 24 (radius: 20)
[29:35:18 -27801.173957] SLOW spr round 25 (radius: 5)
[29:36:52 -27718.192051] SLOW spr round 26 (radius: 5)
[29:38:15 -27680.377765] SLOW spr round 27 (radius: 5)
[29:39:30 -27680.371050] SLOW spr round 28 (radius: 10)
[29:40:42 -27680.250988] SLOW spr round 29 (radius: 5)
[29:42:07 -27680.249873] SLOW spr round 30 (radius: 10)
[29:43:25 -27680.249839] SLOW spr round 31 (radius: 15)
[29:45:07 -27680.249805] SLOW spr round 32 (radius: 20)
[29:47:31 -27680.249772] SLOW spr round 33 (radius: 25)
[29:50:38 -27677.566311] SLOW spr round 34 (radius: 5)
[29:52:10 -27677.146364] SLOW spr round 35 (radius: 5)
[29:53:32 -27677.146008] SLOW spr round 36 (radius: 10)
[29:54:47 -27675.575873] SLOW spr round 37 (radius: 5)
[29:56:14 -27673.840187] SLOW spr round 38 (radius: 5)
[29:57:31 -27673.838441] SLOW spr round 39 (radius: 10)
[29:58:45 -27673.838276] SLOW spr round 40 (radius: 15)
[30:00:30 -27669.942656] SLOW spr round 41 (radius: 5)
[30:01:56 -27668.502118] SLOW spr round 42 (radius: 5)
[30:03:14 -27668.499214] SLOW spr round 43 (radius: 10)
[30:04:27 -27668.498458] SLOW spr round 44 (radius: 15)
[30:06:09 -27668.498232] SLOW spr round 45 (radius: 20)
[30:08:31 -27666.337813] SLOW spr round 46 (radius: 5)
[30:09:59 -27666.010063] SLOW spr round 47 (radius: 5)
[30:11:17 -27666.008753] SLOW spr round 48 (radius: 10)
[30:12:31 -27664.376850] SLOW spr round 49 (radius: 5)
[30:13:53 -27664.376284] SLOW spr round 50 (radius: 10)
[30:15:12 -27664.376269] SLOW spr round 51 (radius: 15)
[30:16:51 -27664.121451] SLOW spr round 52 (radius: 5)
[30:18:18 -27664.120842] SLOW spr round 53 (radius: 10)
[30:19:36 -27664.120822] SLOW spr round 54 (radius: 15)
[30:21:15 -27664.120820] SLOW spr round 55 (radius: 20)
[30:23:35 -27664.120820] SLOW spr round 56 (radius: 25)
[30:26:36 -27651.516150] SLOW spr round 57 (radius: 5)
[30:28:06 -27651.515515] SLOW spr round 58 (radius: 10)
[30:29:28 -27651.515317] SLOW spr round 59 (radius: 15)
[30:31:08 -27651.515231] SLOW spr round 60 (radius: 20)
[30:33:33 -27651.515193] SLOW spr round 61 (radius: 25)
[30:36:35 -27651.515175] Model parameter optimization (eps = 0.100000)

[30:36:38] ML tree search #20, logLikelihood: -27651.473312


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.045606,0.008732) (0.337054,0.524567) (0.161280,0.634641) (0.456060,1.579702) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -27504.777068

AIC score: 58923.554136 / AICc score: 7722535.554136 / BIC score: 63086.356127
Free parameters (model + branch lengths): 1957

WARNING: Number of free parameters (K=1957) is larger than alignment size (n=62).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NMZ7/3_mltree/A6NMZ7.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NMZ7/3_mltree/A6NMZ7.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NMZ7/3_mltree/A6NMZ7.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NMZ7/3_mltree/A6NMZ7.raxml.log

Analysis started: 03-Jul-2021 08:22:00 / finished: 04-Jul-2021 14:58:39

Elapsed time: 110198.759 seconds

Consumed energy: 7522.725 Wh (= 38 km in an electric car, or 188 km with an e-scooter!)