RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 08-Jul-2021 10:59:57 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NMS7/2_msa/A6NMS7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NMS7/3_mltree/A6NMS7 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NMS7/2_msa/A6NMS7_trimmed_msa.fasta [00:00:00] Loaded alignment with 416 taxa and 15 sites WARNING: Sequences tr_E1C726_E1C726_CHICK_9031 and tr_G1NAM0_G1NAM0_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C726_E1C726_CHICK_9031 and tr_H0ZH55_H0ZH55_TAEGU_59729 are exactly identical! WARNING: Sequences tr_E1C726_E1C726_CHICK_9031 and tr_U3J5A4_U3J5A4_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C726_E1C726_CHICK_9031 and tr_A0A226NKT3_A0A226NKT3_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C726_E1C726_CHICK_9031 and tr_A0A226PN74_A0A226PN74_COLVI_9014 are exactly identical! WARNING: Sequences tr_W5JQF2_W5JQF2_ANODA_43151 and tr_A0A084WAF4_A0A084WAF4_ANOSI_74873 are exactly identical! WARNING: Sequences tr_M3YAJ1_M3YAJ1_MUSPF_9669 and tr_H9GWH3_H9GWH3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YAJ1_M3YAJ1_MUSPF_9669 and tr_G1LMM2_G1LMM2_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YAJ1_M3YAJ1_MUSPF_9669 and tr_A0A0D9QUR5_A0A0D9QUR5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YF31_M3YF31_MUSPF_9669 and tr_A0A2I2Z1R9_A0A2I2Z1R9_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YF31_M3YF31_MUSPF_9669 and tr_F7EEM4_F7EEM4_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YF31_M3YF31_MUSPF_9669 and tr_G3TN46_G3TN46_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YF31_M3YF31_MUSPF_9669 and tr_A0A096NQS8_A0A096NQS8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YF31_M3YF31_MUSPF_9669 and tr_A0A2K5P514_A0A2K5P514_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YF31_M3YF31_MUSPF_9669 and tr_A0A2K6C3V5_A0A2K6C3V5_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YF31_M3YF31_MUSPF_9669 and tr_A0A2Y9DZM4_A0A2Y9DZM4_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YF31_M3YF31_MUSPF_9669 and tr_A0A2Y9J0W5_A0A2Y9J0W5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q5U1A7_Q5U1A7_DROME_7227 and tr_B4LM54_B4LM54_DROVI_7244 are exactly identical! WARNING: Sequences tr_Q5U1A7_Q5U1A7_DROME_7227 and tr_B4KNQ6_B4KNQ6_DROMO_7230 are exactly identical! WARNING: Sequences tr_Q5U1A7_Q5U1A7_DROME_7227 and tr_A0A1W4UZB1_A0A1W4UZB1_DROFC_30025 are exactly identical! WARNING: Sequences tr_A0A2I3GPT8_A0A2I3GPT8_NOMLE_61853 and tr_G3SJC0_G3SJC0_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GPT8_A0A2I3GPT8_NOMLE_61853 and tr_A0A2K5ZT65_A0A2K5ZT65_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GPT8_A0A2I3GPT8_NOMLE_61853 and tr_A0A2Y9MZ96_A0A2Y9MZ96_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1QXT1_G1QXT1_NOMLE_61853 and tr_A0A0G2JMZ2_A0A0G2JMZ2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QXT1_G1QXT1_NOMLE_61853 and sp_A6NM11_L37A2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QXT1_G1QXT1_NOMLE_61853 and sp_A6NMS7_L37A1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QXT1_G1QXT1_NOMLE_61853 and sp_O60309_L37A3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RJZ6_G1RJZ6_NOMLE_61853 and tr_F7CED7_F7CED7_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RJZ6_G1RJZ6_NOMLE_61853 and tr_F7H9X8_F7H9X8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RJZ6_G1RJZ6_NOMLE_61853 and tr_A0A096P688_A0A096P688_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RJZ6_G1RJZ6_NOMLE_61853 and tr_A0A0D9QUP2_A0A0D9QUP2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RJZ6_G1RJZ6_NOMLE_61853 and tr_A0A0D9QUR4_A0A0D9QUR4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RJZ6_G1RJZ6_NOMLE_61853 and tr_A0A0D9QUW1_A0A0D9QUW1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RJZ6_G1RJZ6_NOMLE_61853 and tr_A0A2K5LC72_A0A2K5LC72_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RJZ6_G1RJZ6_NOMLE_61853 and tr_A0A2K6B302_A0A2K6B302_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RJZ6_G1RJZ6_NOMLE_61853 and tr_A0A2K6B687_A0A2K6B687_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1P3C9_G1P3C9_MYOLU_59463 and tr_G1PWF7_G1PWF7_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1P3C9_G1P3C9_MYOLU_59463 and tr_G1Q5Q6_G1Q5Q6_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1P3C9_G1P3C9_MYOLU_59463 and tr_A0A2K5LU05_A0A2K5LU05_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1P3C9_G1P3C9_MYOLU_59463 and tr_A0A2K5YJL1_A0A2K5YJL1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3IG36_G3IG36_CRIGR_10029 and tr_A0A1U7R938_A0A1U7R938_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2I2Z365_A0A2I2Z365_GORGO_9595 and tr_A0A2I3RL93_A0A2I3RL93_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Z3D0_A0A2I2Z3D0_GORGO_9595 and tr_A0A2I3SVZ3_A0A2I3SVZ3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZCV9_A0A2I2ZCV9_GORGO_9595 and tr_H2RHT2_H2RHT2_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZCV9_A0A2I2ZCV9_GORGO_9595 and tr_A0A2R9A305_A0A2R9A305_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R2S1_G3R2S1_GORGO_9595 and tr_I3LL86_I3LL86_PIG_9823 are exactly identical! WARNING: Sequences tr_G3RAT1_G3RAT1_GORGO_9595 and tr_H2RDG5_H2RDG5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RAT1_G3RAT1_GORGO_9595 and tr_A0A2R9BJW2_A0A2R9BJW2_PANPA_9597 are exactly identical! WARNING: Sequences tr_C3XWM8_C3XWM8_BRAFL_7739 and tr_C3XWM9_C3XWM9_BRAFL_7739 are exactly identical! WARNING: Sequences tr_C3XWP1_C3XWP1_BRAFL_7739 and tr_C3XWT0_C3XWT0_BRAFL_7739 are exactly identical! WARNING: Sequences tr_C3YAR1_C3YAR1_BRAFL_7739 and tr_C3Z3X7_C3Z3X7_BRAFL_7739 are exactly identical! WARNING: Sequences tr_C3YGV3_C3YGV3_BRAFL_7739 and tr_C4A0N4_C4A0N4_BRAFL_7739 are exactly identical! WARNING: Sequences tr_C3ZQ57_C3ZQ57_BRAFL_7739 and tr_C3ZQ63_C3ZQ63_BRAFL_7739 are exactly identical! WARNING: Sequences tr_G1NAX4_G1NAX4_MELGA_9103 and tr_A0A1V4KUU0_A0A1V4KUU0_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1SHR9_G1SHR9_RABIT_9986 and tr_G1SR40_G1SR40_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_F1PM13_F1PM13_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_F7BRZ8_F7BRZ8_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_W5PM04_W5PM04_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_H0XV08_H0XV08_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_A0A1D5Q2E9_A0A1D5Q2E9_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_A0A1D5QSS6_A0A1D5QSS6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_F1MVP6_F1MVP6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_L5KTD0_L5KTD0_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_A0A2I3LU62_A0A2I3LU62_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_A0A2K6D0T1_A0A2K6D0T1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_A0A2K6A6X7_A0A2K6A6X7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_A0A2Y9KPG1_A0A2Y9KPG1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1SLM5_G1SLM5_RABIT_9986 and tr_A0A384CCG3_A0A384CCG3_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1TNG6_G1TNG6_RABIT_9986 and tr_G1TST3_G1TST3_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1TNG6_G1TNG6_RABIT_9986 and tr_G1U2V0_G1U2V0_RABIT_9986 are exactly identical! WARNING: Sequences tr_F6WNQ7_F6WNQ7_HORSE_9796 and tr_I0FP13_I0FP13_MACMU_9544 are exactly identical! WARNING: Sequences tr_F6WNQ7_F6WNQ7_HORSE_9796 and tr_A0A096N9K5_A0A096N9K5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6WNQ7_F6WNQ7_HORSE_9796 and tr_A0A2K5KJK0_A0A2K5KJK0_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6WNQ7_F6WNQ7_HORSE_9796 and tr_A0A2K6AZW6_A0A2K6AZW6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6WNQ7_F6WNQ7_HORSE_9796 and tr_A0A2K5XLN3_A0A2K5XLN3_MANLE_9568 are exactly identical! WARNING: Sequences tr_M4A1W6_M4A1W6_XIPMA_8083 and tr_A0A087Y4R2_A0A087Y4R2_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A087ZNA8_A0A087ZNA8_APIME_7460 and tr_A0A2A3E7X0_A0A2A3E7X0_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NMQ5_A0A158NMQ5_ATTCE_12957 and tr_F4WVS2_F4WVS2_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NMQ5_A0A158NMQ5_ATTCE_12957 and tr_A0A151X191_A0A151X191_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NMQ5_A0A158NMQ5_ATTCE_12957 and tr_A0A195DBP7_A0A195DBP7_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NMQ5_A0A158NMQ5_ATTCE_12957 and tr_A0A151I134_A0A151I134_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NMQ5_A0A158NMQ5_ATTCE_12957 and tr_A0A151JTR1_A0A151JTR1_9HYME_34720 are exactly identical! WARNING: Sequences sp_Q49AS3_L37A5_HUMAN_9606 and tr_G7PUL1_G7PUL1_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q96QE4_LR37B_HUMAN_9606 and tr_A0A2R9BB91_A0A2R9BB91_PANPA_9597 are exactly identical! WARNING: Sequences tr_G5AM58_G5AM58_HETGA_10181 and tr_G5AXL5_G5AXL5_HETGA_10181 are exactly identical! WARNING: Sequences tr_G3TJQ5_G3TJQ5_LOXAF_9785 and tr_G3TWH7_G3TWH7_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G3TJQ5_G3TJQ5_LOXAF_9785 and tr_G3UK49_G3UK49_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F1RRQ6_F1RRQ6_PIG_9823 and tr_A0A337SKI6_A0A337SKI6_FELCA_9685 are exactly identical! WARNING: Sequences tr_E3MCX8_E3MCX8_CAERE_31234 and tr_A0A261BM18_A0A261BM18_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A0A151MKF4_A0A151MKF4_ALLMI_8496 and tr_A0A1U7RQW2_A0A1U7RQW2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N6H3_A0A151N6H3_ALLMI_8496 and tr_A0A1U7S8B3_A0A1U7S8B3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NHF7_A0A151NHF7_ALLMI_8496 and tr_A0A1U7S959_A0A1U7S959_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151PBV9_A0A151PBV9_ALLMI_8496 and tr_A0A3Q0FZ99_A0A3Q0FZ99_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1U7TDB7_A0A1U7TDB7_TARSY_1868482 and tr_A0A3Q0DLQ4_A0A3Q0DLQ4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A1U7TDB7_A0A1U7TDB7_TARSY_1868482 and tr_A0A3Q0DX15_A0A3Q0DX15_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A3Q0EAY8_A0A3Q0EAY8_TARSY_1868482 and tr_A0A2Y9MMC9_A0A2Y9MMC9_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A3Q0EAY8_A0A3Q0EAY8_TARSY_1868482 and tr_A0A2Y9MMF3_A0A2Y9MMF3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A226MY74_A0A226MY74_CALSU_9009 and tr_A0A226P4G6_A0A226P4G6_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K6DRW4_A0A2K6DRW4_MACNE_9545 and tr_A0A2K5YKG2_A0A2K5YKG2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4AJP3_A0A2U4AJP3_TURTR_9739 and tr_A0A2Y9MYE3_A0A2Y9MYE3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9T8D4_A0A2Y9T8D4_PHYCD_9755 and tr_A0A383ZVW6_A0A383ZVW6_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 101 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NMS7/3_mltree/A6NMS7.raxml.reduced.phy Alignment comprises 1 partitions and 15 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 15 / 15 Gaps: 14.84 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NMS7/3_mltree/A6NMS7.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 416 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 15 / 1200 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -12013.862098] Initial branch length optimization [00:00:00 -9420.577377] Model parameter optimization (eps = 10.000000) [00:00:06 -9309.878405] AUTODETECT spr round 1 (radius: 5) [00:00:14 -7821.345816] AUTODETECT spr round 2 (radius: 10) [00:00:24 -6856.493943] AUTODETECT spr round 3 (radius: 15) [00:00:36 -5918.112873] AUTODETECT spr round 4 (radius: 20) [00:00:49 -5620.886752] AUTODETECT spr round 5 (radius: 25) [00:01:02 -5346.148435] SPR radius for FAST iterations: 25 (autodetect) [00:01:02 -5346.148435] Model parameter optimization (eps = 3.000000) [00:01:06 -5340.409175] FAST spr round 1 (radius: 25) [00:01:17 -4885.040282] FAST spr round 2 (radius: 25) [00:01:27 -4864.138540] FAST spr round 3 (radius: 25) [00:01:37 -4839.667216] FAST spr round 4 (radius: 25) [00:01:46 -4838.776918] FAST spr round 5 (radius: 25) [00:01:55 -4838.776009] Model parameter optimization (eps = 1.000000) [00:01:57 -4836.941974] SLOW spr round 1 (radius: 5) [00:02:09 -4812.300305] SLOW spr round 2 (radius: 5) [00:02:19 -4812.211542] SLOW spr round 3 (radius: 10) [00:02:31 -4810.246690] SLOW spr round 4 (radius: 5) [00:02:44 -4790.796314] SLOW spr round 5 (radius: 5) [00:02:56 -4780.567888] SLOW spr round 6 (radius: 5) [00:03:07 -4780.567836] SLOW spr round 7 (radius: 10) [00:03:18 -4776.682802] SLOW spr round 8 (radius: 5) [00:03:31 -4776.319416] SLOW spr round 9 (radius: 5) [00:03:43 -4776.319354] SLOW spr round 10 (radius: 10) [00:03:54 -4776.319343] SLOW spr round 11 (radius: 15) [00:04:11 -4758.779405] SLOW spr round 12 (radius: 5) [00:04:25 -4754.742352] SLOW spr round 13 (radius: 5) [00:04:37 -4754.741885] SLOW spr round 14 (radius: 10) [00:04:48 -4753.834904] SLOW spr round 15 (radius: 5) [00:05:01 -4753.693129] SLOW spr round 16 (radius: 5) [00:05:12 -4753.693110] SLOW spr round 17 (radius: 10) [00:05:23 -4753.693109] SLOW spr round 18 (radius: 15) [00:05:40 -4751.806147] SLOW spr round 19 (radius: 5) [00:05:53 -4751.742909] SLOW spr round 20 (radius: 10) [00:06:05 -4749.036573] SLOW spr round 21 (radius: 5) [00:06:18 -4749.036566] SLOW spr round 22 (radius: 10) [00:06:29 -4749.036566] SLOW spr round 23 (radius: 15) [00:06:45 -4748.965239] SLOW spr round 24 (radius: 20) [00:07:04 -4745.506287] SLOW spr round 25 (radius: 5) [00:07:18 -4725.769411] SLOW spr round 26 (radius: 5) [00:07:30 -4725.766848] SLOW spr round 27 (radius: 10) [00:07:41 -4725.033002] SLOW spr round 28 (radius: 5) [00:07:54 -4725.032239] SLOW spr round 29 (radius: 10) [00:08:05 -4725.031832] SLOW spr round 30 (radius: 15) [00:08:21 -4724.893777] SLOW spr round 31 (radius: 5) [00:08:34 -4724.889824] SLOW spr round 32 (radius: 10) [00:08:46 -4724.889480] SLOW spr round 33 (radius: 15) [00:09:01 -4724.889431] SLOW spr round 34 (radius: 20) [00:09:20 -4724.889412] SLOW spr round 35 (radius: 25) [00:09:40 -4718.525378] SLOW spr round 36 (radius: 5) [00:09:53 -4718.454632] SLOW spr round 37 (radius: 10) [00:10:06 -4717.301091] SLOW spr round 38 (radius: 5) [00:10:18 -4717.301078] SLOW spr round 39 (radius: 10) [00:10:30 -4717.301075] SLOW spr round 40 (radius: 15) [00:10:46 -4713.274276] SLOW spr round 41 (radius: 5) [00:10:59 -4713.224208] SLOW spr round 42 (radius: 10) [00:11:11 -4713.224204] SLOW spr round 43 (radius: 15) [00:11:26 -4713.224204] SLOW spr round 44 (radius: 20) [00:11:45 -4713.169728] SLOW spr round 45 (radius: 25) [00:12:05 -4713.168637] Model parameter optimization (eps = 0.100000) [00:12:06] ML tree search #1, logLikelihood: -4712.612894 [00:12:06 -12120.676022] Initial branch length optimization [00:12:06 -9496.203009] Model parameter optimization (eps = 10.000000) [00:12:10 -9461.175561] AUTODETECT spr round 1 (radius: 5) [00:12:18 -7809.402159] AUTODETECT spr round 2 (radius: 10) [00:12:28 -6810.068227] AUTODETECT spr round 3 (radius: 15) [00:12:40 -5933.806643] AUTODETECT spr round 4 (radius: 20) [00:12:53 -5591.021080] AUTODETECT spr round 5 (radius: 25) [00:13:07 -5383.070801] SPR radius for FAST iterations: 25 (autodetect) [00:13:07 -5383.070801] Model parameter optimization (eps = 3.000000) [00:13:12 -5348.034881] FAST spr round 1 (radius: 25) [00:13:23 -4790.397492] FAST spr round 2 (radius: 25) [00:13:34 -4744.922914] FAST spr round 3 (radius: 25) [00:13:43 -4740.370289] FAST spr round 4 (radius: 25) [00:13:53 -4739.843539] FAST spr round 5 (radius: 25) [00:14:02 -4738.810621] FAST spr round 6 (radius: 25) [00:14:11 -4738.677877] FAST spr round 7 (radius: 25) [00:14:20 -4738.677774] Model parameter optimization (eps = 1.000000) [00:14:24 -4736.988711] SLOW spr round 1 (radius: 5) [00:14:35 -4729.799831] SLOW spr round 2 (radius: 5) [00:14:46 -4729.770223] SLOW spr round 3 (radius: 10) [00:14:58 -4726.158410] SLOW spr round 4 (radius: 5) [00:15:11 -4726.156697] SLOW spr round 5 (radius: 10) [00:15:23 -4720.461004] SLOW spr round 6 (radius: 5) [00:15:37 -4718.077784] SLOW spr round 7 (radius: 5) [00:15:48 -4718.075585] SLOW spr round 8 (radius: 10) [00:16:00 -4717.274241] SLOW spr round 9 (radius: 5) [00:16:13 -4717.251277] SLOW spr round 10 (radius: 10) [00:16:24 -4717.105199] SLOW spr round 11 (radius: 5) [00:16:37 -4716.756594] SLOW spr round 12 (radius: 5) [00:16:49 -4716.233979] SLOW spr round 13 (radius: 5) [00:17:00 -4716.225329] SLOW spr round 14 (radius: 10) [00:17:11 -4716.225291] SLOW spr round 15 (radius: 15) [00:17:29 -4702.422432] SLOW spr round 16 (radius: 5) [00:17:43 -4698.774178] SLOW spr round 17 (radius: 5) [00:17:55 -4698.563019] SLOW spr round 18 (radius: 5) [00:18:06 -4698.552417] SLOW spr round 19 (radius: 10) [00:18:17 -4698.551689] SLOW spr round 20 (radius: 15) [00:18:34 -4696.938523] SLOW spr round 21 (radius: 5) [00:18:48 -4696.463978] SLOW spr round 22 (radius: 5) [00:19:00 -4695.329890] SLOW spr round 23 (radius: 5) [00:19:11 -4695.329265] SLOW spr round 24 (radius: 10) [00:19:22 -4695.329258] SLOW spr round 25 (radius: 15) [00:19:39 -4695.329257] SLOW spr round 26 (radius: 20) [00:19:57 -4688.545942] SLOW spr round 27 (radius: 5) [00:20:11 -4688.541989] SLOW spr round 28 (radius: 10) [00:20:24 -4688.541447] SLOW spr round 29 (radius: 15) [00:20:39 -4688.541380] SLOW spr round 30 (radius: 20) [00:20:58 -4688.499357] SLOW spr round 31 (radius: 25) [00:21:19 -4684.480748] SLOW spr round 32 (radius: 5) [00:21:33 -4683.665799] SLOW spr round 33 (radius: 5) [00:21:45 -4683.665021] SLOW spr round 34 (radius: 10) [00:21:56 -4683.664999] SLOW spr round 35 (radius: 15) [00:22:13 -4682.310300] SLOW spr round 36 (radius: 5) [00:22:26 -4682.310300] SLOW spr round 37 (radius: 10) [00:22:38 -4682.310300] SLOW spr round 38 (radius: 15) [00:22:54 -4682.310300] SLOW spr round 39 (radius: 20) [00:23:14 -4680.119596] SLOW spr round 40 (radius: 5) [00:23:28 -4680.118649] SLOW spr round 41 (radius: 10) [00:23:40 -4680.118599] SLOW spr round 42 (radius: 15) [00:23:57 -4680.118584] SLOW spr round 43 (radius: 20) [00:24:16 -4679.773493] SLOW spr round 44 (radius: 5) [00:24:30 -4679.771965] SLOW spr round 45 (radius: 10) [00:24:42 -4679.771328] SLOW spr round 46 (radius: 15) [00:24:58 -4679.771075] SLOW spr round 47 (radius: 20) [00:25:18 -4679.770940] SLOW spr round 48 (radius: 25) [00:25:39 -4679.355488] SLOW spr round 49 (radius: 5) [00:25:53 -4679.355375] SLOW spr round 50 (radius: 10) [00:26:05 -4679.355363] SLOW spr round 51 (radius: 15) [00:26:22 -4679.355350] SLOW spr round 52 (radius: 20) [00:26:41 -4679.348062] SLOW spr round 53 (radius: 25) [00:27:02 -4677.240603] SLOW spr round 54 (radius: 5) [00:27:16 -4677.240247] SLOW spr round 55 (radius: 10) [00:27:29 -4677.240130] SLOW spr round 56 (radius: 15) [00:27:44 -4677.240077] SLOW spr round 57 (radius: 20) [00:28:04 -4677.240053] SLOW spr round 58 (radius: 25) [00:28:24 -4677.240041] Model parameter optimization (eps = 0.100000) [00:28:26] ML tree search #2, logLikelihood: -4675.601950 [00:28:26 -12105.534692] Initial branch length optimization [00:28:27 -9402.673785] Model parameter optimization (eps = 10.000000) [00:28:30 -9340.095302] AUTODETECT spr round 1 (radius: 5) [00:28:39 -7849.533488] AUTODETECT spr round 2 (radius: 10) [00:28:49 -6817.888376] AUTODETECT spr round 3 (radius: 15) [00:29:00 -6113.426468] AUTODETECT spr round 4 (radius: 20) [00:29:12 -5780.680346] AUTODETECT spr round 5 (radius: 25) [00:29:24 -5331.370556] SPR radius for FAST iterations: 25 (autodetect) [00:29:24 -5331.370556] Model parameter optimization (eps = 3.000000) [00:29:29 -5309.841806] FAST spr round 1 (radius: 25) [00:29:40 -4867.994131] FAST spr round 2 (radius: 25) [00:29:50 -4793.006670] FAST spr round 3 (radius: 25) [00:30:00 -4779.134421] FAST spr round 4 (radius: 25) [00:30:09 -4776.418315] FAST spr round 5 (radius: 25) [00:30:19 -4774.724679] FAST spr round 6 (radius: 25) [00:30:28 -4774.724663] Model parameter optimization (eps = 1.000000) [00:30:29 -4774.017695] SLOW spr round 1 (radius: 5) [00:30:40 -4767.759120] SLOW spr round 2 (radius: 5) [00:30:51 -4767.751484] SLOW spr round 3 (radius: 10) [00:31:02 -4766.457260] SLOW spr round 4 (radius: 5) [00:31:16 -4763.505041] SLOW spr round 5 (radius: 5) [00:31:28 -4760.552150] SLOW spr round 6 (radius: 5) [00:31:39 -4760.551966] SLOW spr round 7 (radius: 10) [00:31:50 -4758.566415] SLOW spr round 8 (radius: 5) [00:32:03 -4758.215047] SLOW spr round 9 (radius: 5) [00:32:15 -4758.214279] SLOW spr round 10 (radius: 10) [00:32:26 -4758.213511] SLOW spr round 11 (radius: 15) [00:32:43 -4749.032284] SLOW spr round 12 (radius: 5) [00:32:56 -4746.279977] SLOW spr round 13 (radius: 5) [00:33:09 -4746.255105] SLOW spr round 14 (radius: 10) [00:33:20 -4746.254593] SLOW spr round 15 (radius: 15) [00:33:36 -4741.629234] SLOW spr round 16 (radius: 5) [00:33:50 -4739.342351] SLOW spr round 17 (radius: 5) [00:34:02 -4738.630652] SLOW spr round 18 (radius: 5) [00:34:13 -4738.095677] SLOW spr round 19 (radius: 5) [00:34:23 -4738.095438] SLOW spr round 20 (radius: 10) [00:34:34 -4737.881675] SLOW spr round 21 (radius: 5) [00:34:47 -4737.881670] SLOW spr round 22 (radius: 10) [00:34:59 -4735.131230] SLOW spr round 23 (radius: 5) [00:35:12 -4735.130565] SLOW spr round 24 (radius: 10) [00:35:23 -4735.130493] SLOW spr round 25 (radius: 15) [00:35:39 -4735.130481] SLOW spr round 26 (radius: 20) [00:35:57 -4722.651975] SLOW spr round 27 (radius: 5) [00:36:11 -4722.599358] SLOW spr round 28 (radius: 10) [00:36:23 -4720.441007] SLOW spr round 29 (radius: 5) [00:36:36 -4720.349497] SLOW spr round 30 (radius: 10) [00:36:48 -4720.348561] SLOW spr round 31 (radius: 15) [00:37:03 -4718.135973] SLOW spr round 32 (radius: 5) [00:37:16 -4718.093555] SLOW spr round 33 (radius: 10) [00:37:28 -4718.093553] SLOW spr round 34 (radius: 15) [00:37:42 -4718.093545] SLOW spr round 35 (radius: 20) [00:38:01 -4718.093539] SLOW spr round 36 (radius: 25) [00:38:21 -4712.507955] SLOW spr round 37 (radius: 5) [00:38:35 -4711.151669] SLOW spr round 38 (radius: 5) [00:38:47 -4711.149347] SLOW spr round 39 (radius: 10) [00:38:59 -4711.148562] SLOW spr round 40 (radius: 15) [00:39:14 -4711.148184] SLOW spr round 41 (radius: 20) [00:39:33 -4711.068151] SLOW spr round 42 (radius: 25) [00:39:53 -4705.037251] SLOW spr round 43 (radius: 5) [00:40:07 -4703.098642] SLOW spr round 44 (radius: 5) [00:40:19 -4703.098531] SLOW spr round 45 (radius: 10) [00:40:30 -4703.097570] SLOW spr round 46 (radius: 15) [00:40:45 -4698.786357] SLOW spr round 47 (radius: 5) [00:40:59 -4698.779315] SLOW spr round 48 (radius: 10) [00:41:11 -4697.665480] SLOW spr round 49 (radius: 5) [00:41:23 -4697.653003] SLOW spr round 50 (radius: 10) [00:41:35 -4697.653001] SLOW spr round 51 (radius: 15) [00:41:50 -4697.653001] SLOW spr round 52 (radius: 20) [00:42:09 -4697.653001] SLOW spr round 53 (radius: 25) [00:42:29 -4697.652995] Model parameter optimization (eps = 0.100000) [00:42:32] ML tree search #3, logLikelihood: -4695.739873 [00:42:32 -12063.681585] Initial branch length optimization [00:42:32 -9375.521118] Model parameter optimization (eps = 10.000000) [00:42:36 -9308.643255] AUTODETECT spr round 1 (radius: 5) [00:42:45 -7882.272312] AUTODETECT spr round 2 (radius: 10) [00:42:55 -6860.175620] AUTODETECT spr round 3 (radius: 15) [00:43:06 -6090.669367] AUTODETECT spr round 4 (radius: 20) [00:43:19 -5447.338437] AUTODETECT spr round 5 (radius: 25) [00:43:33 -5250.228859] SPR radius for FAST iterations: 25 (autodetect) [00:43:33 -5250.228859] Model parameter optimization (eps = 3.000000) [00:43:37 -5202.537575] FAST spr round 1 (radius: 25) [00:43:47 -4810.583300] FAST spr round 2 (radius: 25) [00:43:57 -4797.452266] FAST spr round 3 (radius: 25) [00:44:07 -4794.589498] FAST spr round 4 (radius: 25) [00:44:16 -4794.095854] FAST spr round 5 (radius: 25) [00:44:25 -4794.094475] Model parameter optimization (eps = 1.000000) [00:44:26 -4793.803398] SLOW spr round 1 (radius: 5) [00:44:37 -4791.502250] SLOW spr round 2 (radius: 5) [00:44:48 -4791.500645] SLOW spr round 3 (radius: 10) [00:44:58 -4790.830189] SLOW spr round 4 (radius: 5) [00:45:11 -4790.498191] SLOW spr round 5 (radius: 5) [00:45:23 -4790.464322] SLOW spr round 6 (radius: 10) [00:45:34 -4787.920698] SLOW spr round 7 (radius: 5) [00:45:47 -4786.361685] SLOW spr round 8 (radius: 5) [00:45:58 -4785.908279] SLOW spr round 9 (radius: 5) [00:46:09 -4785.824712] SLOW spr round 10 (radius: 10) [00:46:20 -4785.823723] SLOW spr round 11 (radius: 15) [00:46:37 -4760.751824] SLOW spr round 12 (radius: 5) [00:46:51 -4756.957417] SLOW spr round 13 (radius: 5) [00:47:03 -4756.708948] SLOW spr round 14 (radius: 5) [00:47:13 -4756.708421] SLOW spr round 15 (radius: 10) [00:47:24 -4756.708406] SLOW spr round 16 (radius: 15) [00:47:40 -4751.873958] SLOW spr round 17 (radius: 5) [00:47:53 -4750.666812] SLOW spr round 18 (radius: 5) [00:48:05 -4750.666731] SLOW spr round 19 (radius: 10) [00:48:15 -4750.666725] SLOW spr round 20 (radius: 15) [00:48:30 -4749.668152] SLOW spr round 21 (radius: 5) [00:48:44 -4749.585858] SLOW spr round 22 (radius: 10) [00:48:55 -4748.103516] SLOW spr round 23 (radius: 5) [00:49:08 -4747.982724] SLOW spr round 24 (radius: 5) [00:49:20 -4747.980422] SLOW spr round 25 (radius: 10) [00:49:30 -4747.977914] SLOW spr round 26 (radius: 15) [00:49:46 -4747.157883] SLOW spr round 27 (radius: 5) [00:49:59 -4746.235576] SLOW spr round 28 (radius: 5) [00:50:11 -4744.442113] SLOW spr round 29 (radius: 5) [00:50:22 -4744.441758] SLOW spr round 30 (radius: 10) [00:50:32 -4744.441757] SLOW spr round 31 (radius: 15) [00:50:48 -4744.441757] SLOW spr round 32 (radius: 20) [00:51:05 -4728.251588] SLOW spr round 33 (radius: 5) [00:51:18 -4728.251343] SLOW spr round 34 (radius: 10) [00:51:30 -4728.251304] SLOW spr round 35 (radius: 15) [00:51:45 -4728.251298] SLOW spr round 36 (radius: 20) [00:52:02 -4728.251297] SLOW spr round 37 (radius: 25) [00:52:23 -4717.808115] SLOW spr round 38 (radius: 5) [00:52:36 -4717.620864] SLOW spr round 39 (radius: 5) [00:52:48 -4717.083717] SLOW spr round 40 (radius: 5) [00:52:59 -4717.083578] SLOW spr round 41 (radius: 10) [00:53:10 -4717.062287] SLOW spr round 42 (radius: 15) [00:53:27 -4717.062186] SLOW spr round 43 (radius: 20) [00:53:47 -4716.355188] SLOW spr round 44 (radius: 5) [00:54:00 -4716.355050] SLOW spr round 45 (radius: 10) [00:54:12 -4716.328231] SLOW spr round 46 (radius: 15) [00:54:27 -4716.327926] SLOW spr round 47 (radius: 20) [00:54:47 -4716.327909] SLOW spr round 48 (radius: 25) [00:55:08 -4710.753858] SLOW spr round 49 (radius: 5) [00:55:22 -4702.597314] SLOW spr round 50 (radius: 5) [00:55:34 -4702.597279] SLOW spr round 51 (radius: 10) [00:55:45 -4702.597279] SLOW spr round 52 (radius: 15) [00:56:01 -4701.440401] SLOW spr round 53 (radius: 5) [00:56:14 -4701.439503] SLOW spr round 54 (radius: 10) [00:56:26 -4701.439483] SLOW spr round 55 (radius: 15) [00:56:42 -4701.439481] SLOW spr round 56 (radius: 20) [00:57:01 -4701.439481] SLOW spr round 57 (radius: 25) [00:57:23 -4700.277128] SLOW spr round 58 (radius: 5) [00:57:36 -4699.976014] SLOW spr round 59 (radius: 5) [00:57:48 -4699.975973] SLOW spr round 60 (radius: 10) [00:57:59 -4699.975973] SLOW spr round 61 (radius: 15) [00:58:16 -4680.440464] SLOW spr round 62 (radius: 5) [00:58:29 -4680.230016] SLOW spr round 63 (radius: 5) [00:58:40 -4680.227258] SLOW spr round 64 (radius: 10) [00:58:51 -4680.226732] SLOW spr round 65 (radius: 15) [00:59:08 -4680.226628] SLOW spr round 66 (radius: 20) [00:59:28 -4680.226606] SLOW spr round 67 (radius: 25) [00:59:49 -4680.226601] Model parameter optimization (eps = 0.100000) [00:59:52] ML tree search #4, logLikelihood: -4679.088556 [00:59:52 -12044.631452] Initial branch length optimization [00:59:52 -9577.030717] Model parameter optimization (eps = 10.000000) [00:59:57 -9521.184745] AUTODETECT spr round 1 (radius: 5) [01:00:05 -7580.577573] AUTODETECT spr round 2 (radius: 10) [01:00:16 -6345.688016] AUTODETECT spr round 3 (radius: 15) [01:00:27 -5750.428719] AUTODETECT spr round 4 (radius: 20) [01:00:40 -5403.055350] AUTODETECT spr round 5 (radius: 25) [01:00:53 -5278.612247] SPR radius for FAST iterations: 25 (autodetect) [01:00:53 -5278.612247] Model parameter optimization (eps = 3.000000) [01:00:58 -5245.446544] FAST spr round 1 (radius: 25) [01:01:08 -4893.973475] FAST spr round 2 (radius: 25) [01:01:18 -4861.231245] FAST spr round 3 (radius: 25) [01:01:28 -4853.136001] FAST spr round 4 (radius: 25) [01:01:37 -4853.004562] FAST spr round 5 (radius: 25) [01:01:46 -4853.001282] Model parameter optimization (eps = 1.000000) [01:01:47 -4852.763004] SLOW spr round 1 (radius: 5) [01:01:58 -4848.856497] SLOW spr round 2 (radius: 5) [01:02:09 -4848.345837] SLOW spr round 3 (radius: 5) [01:02:19 -4848.345213] SLOW spr round 4 (radius: 10) [01:02:30 -4843.759849] SLOW spr round 5 (radius: 5) [01:02:43 -4838.992204] SLOW spr round 6 (radius: 5) [01:02:55 -4837.994429] SLOW spr round 7 (radius: 5) [01:03:05 -4837.993920] SLOW spr round 8 (radius: 10) [01:03:16 -4836.510299] SLOW spr round 9 (radius: 5) [01:03:30 -4836.353221] SLOW spr round 10 (radius: 5) [01:03:41 -4836.351219] SLOW spr round 11 (radius: 10) [01:03:52 -4836.350871] SLOW spr round 12 (radius: 15) [01:04:10 -4809.802219] SLOW spr round 13 (radius: 5) [01:04:23 -4797.543969] SLOW spr round 14 (radius: 5) [01:04:35 -4797.542708] SLOW spr round 15 (radius: 10) [01:04:46 -4795.960978] SLOW spr round 16 (radius: 5) [01:04:59 -4795.947864] SLOW spr round 17 (radius: 10) [01:05:11 -4793.725531] SLOW spr round 18 (radius: 5) [01:05:23 -4793.725521] SLOW spr round 19 (radius: 10) [01:05:35 -4793.725521] SLOW spr round 20 (radius: 15) [01:05:52 -4791.768034] SLOW spr round 21 (radius: 5) [01:06:05 -4790.872386] SLOW spr round 22 (radius: 5) [01:06:17 -4790.872335] SLOW spr round 23 (radius: 10) [01:06:28 -4790.872331] SLOW spr round 24 (radius: 15) [01:06:45 -4790.872330] SLOW spr round 25 (radius: 20) [01:07:05 -4787.511725] SLOW spr round 26 (radius: 5) [01:07:19 -4786.949703] SLOW spr round 27 (radius: 5) [01:07:30 -4786.947734] SLOW spr round 28 (radius: 10) [01:07:41 -4786.947647] SLOW spr round 29 (radius: 15) [01:07:58 -4782.454736] SLOW spr round 30 (radius: 5) [01:08:11 -4782.324783] SLOW spr round 31 (radius: 5) [01:08:22 -4782.322323] SLOW spr round 32 (radius: 10) [01:08:33 -4782.322245] SLOW spr round 33 (radius: 15) [01:08:50 -4782.322235] SLOW spr round 34 (radius: 20) [01:09:09 -4779.649644] SLOW spr round 35 (radius: 5) [01:09:23 -4777.567445] SLOW spr round 36 (radius: 5) [01:09:34 -4777.567329] SLOW spr round 37 (radius: 10) [01:09:45 -4777.567295] SLOW spr round 38 (radius: 15) [01:10:02 -4777.567280] SLOW spr round 39 (radius: 20) [01:10:21 -4777.567277] SLOW spr round 40 (radius: 25) [01:10:42 -4775.082494] SLOW spr round 41 (radius: 5) [01:10:56 -4775.082455] SLOW spr round 42 (radius: 10) [01:11:07 -4775.082455] SLOW spr round 43 (radius: 15) [01:11:23 -4775.082455] SLOW spr round 44 (radius: 20) [01:11:42 -4775.082455] SLOW spr round 45 (radius: 25) [01:12:02 -4775.082455] Model parameter optimization (eps = 0.100000) [01:12:04] ML tree search #5, logLikelihood: -4774.746471 [01:12:04 -11878.035732] Initial branch length optimization [01:12:04 -9390.921839] Model parameter optimization (eps = 10.000000) [01:12:08 -9345.962664] AUTODETECT spr round 1 (radius: 5) [01:12:17 -7718.432813] AUTODETECT spr round 2 (radius: 10) [01:12:27 -6745.427526] AUTODETECT spr round 3 (radius: 15) [01:12:38 -5935.752891] AUTODETECT spr round 4 (radius: 20) [01:12:50 -5739.492784] AUTODETECT spr round 5 (radius: 25) [01:13:01 -5551.224588] SPR radius for FAST iterations: 25 (autodetect) [01:13:01 -5551.224588] Model parameter optimization (eps = 3.000000) [01:13:04 -5529.366687] FAST spr round 1 (radius: 25) [01:13:16 -4883.575448] FAST spr round 2 (radius: 25) [01:13:26 -4825.903772] FAST spr round 3 (radius: 25) [01:13:35 -4822.264324] FAST spr round 4 (radius: 25) [01:13:45 -4819.224457] FAST spr round 5 (radius: 25) [01:13:54 -4819.224182] Model parameter optimization (eps = 1.000000) [01:13:55 -4816.947366] SLOW spr round 1 (radius: 5) [01:14:07 -4816.730312] SLOW spr round 2 (radius: 5) [01:14:17 -4816.727244] SLOW spr round 3 (radius: 10) [01:14:28 -4812.981023] SLOW spr round 4 (radius: 5) [01:14:41 -4812.956136] SLOW spr round 5 (radius: 10) [01:14:53 -4811.084384] SLOW spr round 6 (radius: 5) [01:15:05 -4811.066612] SLOW spr round 7 (radius: 10) [01:15:17 -4811.018040] SLOW spr round 8 (radius: 15) [01:15:33 -4803.571725] SLOW spr round 9 (radius: 5) [01:15:46 -4802.344642] SLOW spr round 10 (radius: 5) [01:15:58 -4802.344254] SLOW spr round 11 (radius: 10) [01:16:09 -4802.278231] SLOW spr round 12 (radius: 15) [01:16:24 -4802.277341] SLOW spr round 13 (radius: 20) [01:16:41 -4795.687903] SLOW spr round 14 (radius: 5) [01:16:55 -4795.454735] SLOW spr round 15 (radius: 5) [01:17:06 -4795.425609] SLOW spr round 16 (radius: 10) [01:17:17 -4795.124798] SLOW spr round 17 (radius: 5) [01:17:30 -4795.123052] SLOW spr round 18 (radius: 10) [01:17:42 -4793.602213] SLOW spr round 19 (radius: 5) [01:17:54 -4792.952751] SLOW spr round 20 (radius: 5) [01:18:06 -4792.450182] SLOW spr round 21 (radius: 5) [01:18:17 -4792.449982] SLOW spr round 22 (radius: 10) [01:18:27 -4792.449945] SLOW spr round 23 (radius: 15) [01:18:43 -4791.799945] SLOW spr round 24 (radius: 5) [01:18:57 -4791.355014] SLOW spr round 25 (radius: 5) [01:19:08 -4791.352886] SLOW spr round 26 (radius: 10) [01:19:19 -4791.275972] SLOW spr round 27 (radius: 15) [01:19:35 -4791.274917] SLOW spr round 28 (radius: 20) [01:19:52 -4788.360880] SLOW spr round 29 (radius: 5) [01:20:06 -4788.190711] SLOW spr round 30 (radius: 5) [01:20:17 -4788.190684] SLOW spr round 31 (radius: 10) [01:20:28 -4788.190684] SLOW spr round 32 (radius: 15) [01:20:43 -4787.294250] SLOW spr round 33 (radius: 5) [01:20:56 -4787.294176] SLOW spr round 34 (radius: 10) [01:21:08 -4787.294176] SLOW spr round 35 (radius: 15) [01:21:23 -4787.294176] SLOW spr round 36 (radius: 20) [01:21:40 -4787.294176] SLOW spr round 37 (radius: 25) [01:21:58 -4761.175370] SLOW spr round 38 (radius: 5) [01:22:12 -4759.604308] SLOW spr round 39 (radius: 5) [01:22:24 -4758.254386] SLOW spr round 40 (radius: 5) [01:22:35 -4758.253423] SLOW spr round 41 (radius: 10) [01:22:45 -4758.253402] SLOW spr round 42 (radius: 15) [01:23:01 -4758.253402] SLOW spr round 43 (radius: 20) [01:23:18 -4758.253402] SLOW spr round 44 (radius: 25) [01:23:37 -4757.069060] SLOW spr round 45 (radius: 5) [01:23:51 -4753.485670] SLOW spr round 46 (radius: 5) [01:24:03 -4726.086892] SLOW spr round 47 (radius: 5) [01:24:14 -4709.656384] SLOW spr round 48 (radius: 5) [01:24:24 -4709.656379] SLOW spr round 49 (radius: 10) [01:24:35 -4709.656379] SLOW spr round 50 (radius: 15) [01:24:51 -4709.656379] SLOW spr round 51 (radius: 20) [01:25:08 -4709.656379] SLOW spr round 52 (radius: 25) [01:25:26 -4708.799194] SLOW spr round 53 (radius: 5) [01:25:39 -4708.799193] SLOW spr round 54 (radius: 10) [01:25:51 -4683.619184] SLOW spr round 55 (radius: 5) [01:26:04 -4683.619183] SLOW spr round 56 (radius: 10) [01:26:15 -4683.619183] SLOW spr round 57 (radius: 15) [01:26:30 -4683.070323] SLOW spr round 58 (radius: 5) [01:26:43 -4682.868394] SLOW spr round 59 (radius: 5) [01:26:55 -4682.868380] SLOW spr round 60 (radius: 10) [01:27:06 -4682.868380] SLOW spr round 61 (radius: 15) [01:27:21 -4682.868380] SLOW spr round 62 (radius: 20) [01:27:38 -4682.868380] SLOW spr round 63 (radius: 25) [01:27:56 -4682.868380] Model parameter optimization (eps = 0.100000) [01:27:57] ML tree search #6, logLikelihood: -4682.545971 [01:27:57 -11956.832596] Initial branch length optimization [01:27:57 -9464.522488] Model parameter optimization (eps = 10.000000) [01:28:01 -9392.246341] AUTODETECT spr round 1 (radius: 5) [01:28:09 -7716.421605] AUTODETECT spr round 2 (radius: 10) [01:28:19 -6854.692536] AUTODETECT spr round 3 (radius: 15) [01:28:30 -6213.033890] AUTODETECT spr round 4 (radius: 20) [01:28:42 -5802.778107] AUTODETECT spr round 5 (radius: 25) [01:28:55 -5285.923762] SPR radius for FAST iterations: 25 (autodetect) [01:28:55 -5285.923762] Model parameter optimization (eps = 3.000000) [01:28:59 -5256.056291] FAST spr round 1 (radius: 25) [01:29:09 -4879.196517] FAST spr round 2 (radius: 25) [01:29:19 -4797.560153] FAST spr round 3 (radius: 25) [01:29:29 -4787.147344] FAST spr round 4 (radius: 25) [01:29:38 -4787.146854] Model parameter optimization (eps = 1.000000) [01:29:41 -4784.583048] SLOW spr round 1 (radius: 5) [01:29:53 -4776.065130] SLOW spr round 2 (radius: 5) [01:30:04 -4773.685785] SLOW spr round 3 (radius: 5) [01:30:14 -4773.684543] SLOW spr round 4 (radius: 10) [01:30:26 -4768.445750] SLOW spr round 5 (radius: 5) [01:30:39 -4767.068916] SLOW spr round 6 (radius: 5) [01:30:50 -4766.960236] SLOW spr round 7 (radius: 5) [01:31:01 -4766.960211] SLOW spr round 8 (radius: 10) [01:31:12 -4766.960203] SLOW spr round 9 (radius: 15) [01:31:28 -4761.289775] SLOW spr round 10 (radius: 5) [01:31:42 -4756.839859] SLOW spr round 11 (radius: 5) [01:31:53 -4756.246365] SLOW spr round 12 (radius: 5) [01:32:04 -4756.246356] SLOW spr round 13 (radius: 10) [01:32:16 -4752.359288] SLOW spr round 14 (radius: 5) [01:32:29 -4750.582461] SLOW spr round 15 (radius: 5) [01:32:40 -4750.489435] SLOW spr round 16 (radius: 10) [01:32:51 -4750.021710] SLOW spr round 17 (radius: 5) [01:33:04 -4749.605247] SLOW spr round 18 (radius: 5) [01:33:16 -4749.601007] SLOW spr round 19 (radius: 10) [01:33:27 -4749.601004] SLOW spr round 20 (radius: 15) [01:33:42 -4749.601004] SLOW spr round 21 (radius: 20) [01:33:59 -4740.124448] SLOW spr round 22 (radius: 5) [01:34:13 -4739.710798] SLOW spr round 23 (radius: 5) [01:34:25 -4739.708798] SLOW spr round 24 (radius: 10) [01:34:36 -4739.708723] SLOW spr round 25 (radius: 15) [01:34:51 -4739.609624] SLOW spr round 26 (radius: 20) [01:35:09 -4735.067056] SLOW spr round 27 (radius: 5) [01:35:23 -4734.558876] SLOW spr round 28 (radius: 5) [01:35:34 -4734.557507] SLOW spr round 29 (radius: 10) [01:35:45 -4734.557506] SLOW spr round 30 (radius: 15) [01:36:01 -4734.557505] SLOW spr round 31 (radius: 20) [01:36:18 -4734.064866] SLOW spr round 32 (radius: 5) [01:36:32 -4731.609762] SLOW spr round 33 (radius: 5) [01:36:43 -4731.609753] SLOW spr round 34 (radius: 10) [01:36:54 -4731.609753] SLOW spr round 35 (radius: 15) [01:37:10 -4731.609752] SLOW spr round 36 (radius: 20) [01:37:27 -4731.609752] SLOW spr round 37 (radius: 25) [01:37:47 -4715.654709] SLOW spr round 38 (radius: 5) [01:38:01 -4697.326860] SLOW spr round 39 (radius: 5) [01:38:13 -4694.438751] SLOW spr round 40 (radius: 5) [01:38:23 -4694.429944] SLOW spr round 41 (radius: 10) [01:38:34 -4694.429910] SLOW spr round 42 (radius: 15) [01:38:50 -4694.429908] SLOW spr round 43 (radius: 20) [01:39:08 -4693.923906] SLOW spr round 44 (radius: 5) [01:39:21 -4693.787456] SLOW spr round 45 (radius: 5) [01:39:32 -4693.787455] SLOW spr round 46 (radius: 10) [01:39:43 -4693.787453] SLOW spr round 47 (radius: 15) [01:39:59 -4693.787453] SLOW spr round 48 (radius: 20) [01:40:17 -4693.787452] SLOW spr round 49 (radius: 25) [01:40:36 -4689.933358] SLOW spr round 50 (radius: 5) [01:40:50 -4689.928244] SLOW spr round 51 (radius: 10) [01:41:02 -4688.172091] SLOW spr round 52 (radius: 5) [01:41:15 -4688.168101] SLOW spr round 53 (radius: 10) [01:41:26 -4688.167842] SLOW spr round 54 (radius: 15) [01:41:41 -4688.167756] SLOW spr round 55 (radius: 20) [01:41:59 -4688.167720] SLOW spr round 56 (radius: 25) [01:42:18 -4687.555637] SLOW spr round 57 (radius: 5) [01:42:32 -4686.709804] SLOW spr round 58 (radius: 5) [01:42:44 -4686.709800] SLOW spr round 59 (radius: 10) [01:42:55 -4686.709799] SLOW spr round 60 (radius: 15) [01:43:10 -4683.903221] SLOW spr round 61 (radius: 5) [01:43:23 -4683.464946] SLOW spr round 62 (radius: 5) [01:43:35 -4683.464579] SLOW spr round 63 (radius: 10) [01:43:46 -4682.816142] SLOW spr round 64 (radius: 5) [01:43:58 -4682.816090] SLOW spr round 65 (radius: 10) [01:44:10 -4682.816088] SLOW spr round 66 (radius: 15) [01:44:25 -4682.816088] SLOW spr round 67 (radius: 20) [01:44:42 -4682.157934] SLOW spr round 68 (radius: 5) [01:44:56 -4682.157901] SLOW spr round 69 (radius: 10) [01:45:08 -4682.157899] SLOW spr round 70 (radius: 15) [01:45:22 -4682.157899] SLOW spr round 71 (radius: 20) [01:45:40 -4682.157898] SLOW spr round 72 (radius: 25) [01:46:00 -4682.157898] Model parameter optimization (eps = 0.100000) [01:46:02] ML tree search #7, logLikelihood: -4681.169632 [01:46:02 -12004.617985] Initial branch length optimization [01:46:02 -9264.588713] Model parameter optimization (eps = 10.000000) [01:46:05 -9234.571560] AUTODETECT spr round 1 (radius: 5) [01:46:14 -7627.963460] AUTODETECT spr round 2 (radius: 10) [01:46:24 -6662.529374] AUTODETECT spr round 3 (radius: 15) [01:46:35 -5889.405770] AUTODETECT spr round 4 (radius: 20) [01:46:48 -5587.260074] AUTODETECT spr round 5 (radius: 25) [01:47:01 -5246.982115] SPR radius for FAST iterations: 25 (autodetect) [01:47:01 -5246.982115] Model parameter optimization (eps = 3.000000) [01:47:05 -5215.821753] FAST spr round 1 (radius: 25) [01:47:16 -4822.425247] FAST spr round 2 (radius: 25) [01:47:26 -4781.506708] FAST spr round 3 (radius: 25) [01:47:35 -4778.558935] FAST spr round 4 (radius: 25) [01:47:45 -4777.299910] FAST spr round 5 (radius: 25) [01:47:54 -4777.297806] Model parameter optimization (eps = 1.000000) [01:47:56 -4776.143213] SLOW spr round 1 (radius: 5) [01:48:07 -4768.232738] SLOW spr round 2 (radius: 5) [01:48:19 -4767.240608] SLOW spr round 3 (radius: 5) [01:48:30 -4764.810919] SLOW spr round 4 (radius: 5) [01:48:40 -4764.810826] SLOW spr round 5 (radius: 10) [01:48:51 -4764.451994] SLOW spr round 6 (radius: 5) [01:49:04 -4763.432150] SLOW spr round 7 (radius: 5) [01:49:15 -4763.432004] SLOW spr round 8 (radius: 10) [01:49:26 -4757.749554] SLOW spr round 9 (radius: 5) [01:49:39 -4748.581488] SLOW spr round 10 (radius: 5) [01:49:51 -4746.621662] SLOW spr round 11 (radius: 5) [01:50:02 -4746.375614] SLOW spr round 12 (radius: 5) [01:50:12 -4746.375586] SLOW spr round 13 (radius: 10) [01:50:23 -4738.896003] SLOW spr round 14 (radius: 5) [01:50:36 -4738.894326] SLOW spr round 15 (radius: 10) [01:50:48 -4737.754931] SLOW spr round 16 (radius: 5) [01:51:01 -4736.370417] SLOW spr round 17 (radius: 5) [01:51:12 -4736.162429] SLOW spr round 18 (radius: 5) [01:51:23 -4735.362656] SLOW spr round 19 (radius: 5) [01:51:34 -4734.916201] SLOW spr round 20 (radius: 5) [01:51:45 -4734.611705] SLOW spr round 21 (radius: 5) [01:51:55 -4734.610373] SLOW spr round 22 (radius: 10) [01:52:06 -4734.610341] SLOW spr round 23 (radius: 15) [01:52:24 -4727.171877] SLOW spr round 24 (radius: 5) [01:52:38 -4702.931261] SLOW spr round 25 (radius: 5) [01:52:50 -4702.931244] SLOW spr round 26 (radius: 10) [01:53:01 -4702.931215] SLOW spr round 27 (radius: 15) [01:53:19 -4701.864601] SLOW spr round 28 (radius: 5) [01:53:32 -4701.121009] SLOW spr round 29 (radius: 5) [01:53:44 -4701.118371] SLOW spr round 30 (radius: 10) [01:53:55 -4701.118075] SLOW spr round 31 (radius: 15) [01:54:13 -4701.084583] SLOW spr round 32 (radius: 20) [01:54:35 -4694.795281] SLOW spr round 33 (radius: 5) [01:54:49 -4694.245394] SLOW spr round 34 (radius: 5) [01:55:01 -4694.244433] SLOW spr round 35 (radius: 10) [01:55:12 -4694.244287] SLOW spr round 36 (radius: 15) [01:55:29 -4694.244165] SLOW spr round 37 (radius: 20) [01:55:51 -4694.244059] SLOW spr round 38 (radius: 25) [01:56:11 -4688.987871] SLOW spr round 39 (radius: 5) [01:56:25 -4688.311437] SLOW spr round 40 (radius: 5) [01:56:37 -4688.311406] SLOW spr round 41 (radius: 10) [01:56:48 -4688.311389] SLOW spr round 42 (radius: 15) [01:57:05 -4687.629557] SLOW spr round 43 (radius: 5) [01:57:19 -4684.757658] SLOW spr round 44 (radius: 5) [01:57:30 -4684.757241] SLOW spr round 45 (radius: 10) [01:57:41 -4684.757220] SLOW spr round 46 (radius: 15) [01:57:59 -4684.757215] SLOW spr round 47 (radius: 20) [01:58:21 -4684.757211] SLOW spr round 48 (radius: 25) [01:58:41 -4684.757208] Model parameter optimization (eps = 0.100000) [01:58:43] ML tree search #8, logLikelihood: -4683.804103 [01:58:43 -12078.346952] Initial branch length optimization [01:58:43 -9495.804060] Model parameter optimization (eps = 10.000000) [01:58:47 -9431.893581] AUTODETECT spr round 1 (radius: 5) [01:58:56 -7973.458984] AUTODETECT spr round 2 (radius: 10) [01:59:06 -6809.543917] AUTODETECT spr round 3 (radius: 15) [01:59:18 -5836.000691] AUTODETECT spr round 4 (radius: 20) [01:59:31 -5273.051510] AUTODETECT spr round 5 (radius: 25) [01:59:45 -5157.203187] SPR radius for FAST iterations: 25 (autodetect) [01:59:45 -5157.203187] Model parameter optimization (eps = 3.000000) [01:59:48 -5131.076072] FAST spr round 1 (radius: 25) [01:59:58 -4791.299345] FAST spr round 2 (radius: 25) [02:00:08 -4768.181616] FAST spr round 3 (radius: 25) [02:00:17 -4764.916130] FAST spr round 4 (radius: 25) [02:00:27 -4762.608493] FAST spr round 5 (radius: 25) [02:00:36 -4762.607903] Model parameter optimization (eps = 1.000000) [02:00:38 -4760.659782] SLOW spr round 1 (radius: 5) [02:00:49 -4759.228956] SLOW spr round 2 (radius: 5) [02:01:00 -4759.227138] SLOW spr round 3 (radius: 10) [02:01:11 -4754.843747] SLOW spr round 4 (radius: 5) [02:01:25 -4750.219534] SLOW spr round 5 (radius: 5) [02:01:36 -4750.179064] SLOW spr round 6 (radius: 10) [02:01:47 -4750.178813] SLOW spr round 7 (radius: 15) [02:02:05 -4728.855602] SLOW spr round 8 (radius: 5) [02:02:18 -4716.805367] SLOW spr round 9 (radius: 5) [02:02:30 -4716.805235] SLOW spr round 10 (radius: 10) [02:02:41 -4716.398775] SLOW spr round 11 (radius: 5) [02:02:54 -4716.170376] SLOW spr round 12 (radius: 5) [02:03:06 -4716.060338] SLOW spr round 13 (radius: 5) [02:03:16 -4716.050716] SLOW spr round 14 (radius: 10) [02:03:27 -4716.050673] SLOW spr round 15 (radius: 15) [02:03:44 -4715.992307] SLOW spr round 16 (radius: 20) [02:04:03 -4709.817943] SLOW spr round 17 (radius: 5) [02:04:17 -4708.470839] SLOW spr round 18 (radius: 5) [02:04:29 -4708.468441] SLOW spr round 19 (radius: 10) [02:04:40 -4708.277916] SLOW spr round 20 (radius: 5) [02:04:52 -4708.277406] SLOW spr round 21 (radius: 10) [02:05:04 -4705.270242] SLOW spr round 22 (radius: 5) [02:05:17 -4704.995929] SLOW spr round 23 (radius: 5) [02:05:28 -4704.995890] SLOW spr round 24 (radius: 10) [02:05:39 -4704.995890] SLOW spr round 25 (radius: 15) [02:05:55 -4704.181128] SLOW spr round 26 (radius: 5) [02:06:08 -4704.180696] SLOW spr round 27 (radius: 10) [02:06:20 -4704.180696] SLOW spr round 28 (radius: 15) [02:06:35 -4704.121380] SLOW spr round 29 (radius: 20) [02:06:54 -4700.644384] SLOW spr round 30 (radius: 5) [02:07:08 -4699.844257] SLOW spr round 31 (radius: 5) [02:07:19 -4699.824519] SLOW spr round 32 (radius: 10) [02:07:30 -4698.833054] SLOW spr round 33 (radius: 5) [02:07:43 -4698.581051] SLOW spr round 34 (radius: 5) [02:07:55 -4698.578152] SLOW spr round 35 (radius: 10) [02:08:05 -4698.576993] SLOW spr round 36 (radius: 15) [02:08:21 -4698.576503] SLOW spr round 37 (radius: 20) [02:08:40 -4696.387441] SLOW spr round 38 (radius: 5) [02:08:53 -4696.346859] SLOW spr round 39 (radius: 10) [02:09:05 -4696.346544] SLOW spr round 40 (radius: 15) [02:09:21 -4696.346458] SLOW spr round 41 (radius: 20) [02:09:40 -4696.346433] SLOW spr round 42 (radius: 25) [02:09:59 -4687.925807] SLOW spr round 43 (radius: 5) [02:10:13 -4687.694702] SLOW spr round 44 (radius: 5) [02:10:25 -4687.694188] SLOW spr round 45 (radius: 10) [02:10:36 -4687.694043] SLOW spr round 46 (radius: 15) [02:10:52 -4686.551998] SLOW spr round 47 (radius: 5) [02:11:05 -4686.551976] SLOW spr round 48 (radius: 10) [02:11:17 -4686.551976] SLOW spr round 49 (radius: 15) [02:11:32 -4686.551976] SLOW spr round 50 (radius: 20) [02:11:51 -4686.171439] SLOW spr round 51 (radius: 5) [02:12:04 -4686.171425] SLOW spr round 52 (radius: 10) [02:12:16 -4686.171425] SLOW spr round 53 (radius: 15) [02:12:32 -4686.171425] SLOW spr round 54 (radius: 20) [02:12:50 -4686.152660] SLOW spr round 55 (radius: 25) [02:13:09 -4685.893569] SLOW spr round 56 (radius: 5) [02:13:23 -4685.893136] SLOW spr round 57 (radius: 10) [02:13:35 -4685.881501] SLOW spr round 58 (radius: 15) [02:13:50 -4685.881492] SLOW spr round 59 (radius: 20) [02:14:09 -4683.966814] SLOW spr round 60 (radius: 5) [02:14:22 -4683.966810] SLOW spr round 61 (radius: 10) [02:14:34 -4683.966810] SLOW spr round 62 (radius: 15) [02:14:50 -4683.966810] SLOW spr round 63 (radius: 20) [02:15:08 -4683.966810] SLOW spr round 64 (radius: 25) [02:15:27 -4683.966810] Model parameter optimization (eps = 0.100000) [02:15:29] ML tree search #9, logLikelihood: -4683.551452 [02:15:29 -12094.843534] Initial branch length optimization [02:15:29 -9339.547520] Model parameter optimization (eps = 10.000000) [02:15:32 -9304.980949] AUTODETECT spr round 1 (radius: 5) [02:15:41 -7808.022320] AUTODETECT spr round 2 (radius: 10) [02:15:51 -6846.290496] AUTODETECT spr round 3 (radius: 15) [02:16:02 -6350.744561] AUTODETECT spr round 4 (radius: 20) [02:16:14 -6075.130753] AUTODETECT spr round 5 (radius: 25) [02:16:25 -5978.642199] SPR radius for FAST iterations: 25 (autodetect) [02:16:25 -5978.642199] Model parameter optimization (eps = 3.000000) [02:16:30 -5941.008158] FAST spr round 1 (radius: 25) [02:16:41 -5494.360355] FAST spr round 2 (radius: 25) [02:16:51 -5450.505119] FAST spr round 3 (radius: 25) [02:17:01 -5427.113576] FAST spr round 4 (radius: 25) [02:17:10 -5420.779387] FAST spr round 5 (radius: 25) [02:17:19 -5420.669010] FAST spr round 6 (radius: 25) [02:17:28 -5420.668247] Model parameter optimization (eps = 1.000000) [02:17:30 -5420.017130] SLOW spr round 1 (radius: 5) [02:17:41 -5419.008955] SLOW spr round 2 (radius: 5) [02:17:52 -5419.007967] SLOW spr round 3 (radius: 10) [02:18:03 -5417.319051] SLOW spr round 4 (radius: 5) [02:18:16 -5413.655676] SLOW spr round 5 (radius: 5) [02:18:28 -5413.654180] SLOW spr round 6 (radius: 10) [02:18:38 -5413.653924] SLOW spr round 7 (radius: 15) [02:18:55 -5403.493440] SLOW spr round 8 (radius: 5) [02:19:09 -5400.057268] SLOW spr round 9 (radius: 5) [02:19:21 -5398.454238] SLOW spr round 10 (radius: 5) [02:19:32 -5398.447018] SLOW spr round 11 (radius: 10) [02:19:42 -5398.446777] SLOW spr round 12 (radius: 15) [02:19:58 -5392.790314] SLOW spr round 13 (radius: 5) [02:20:12 -5391.803199] SLOW spr round 14 (radius: 5) [02:20:23 -5391.800618] SLOW spr round 15 (radius: 10) [02:20:34 -5391.491905] SLOW spr round 16 (radius: 5) [02:20:47 -5391.491904] SLOW spr round 17 (radius: 10) [02:20:59 -5391.491904] SLOW spr round 18 (radius: 15) [02:21:14 -5391.491904] SLOW spr round 19 (radius: 20) [02:21:31 -5387.291999] SLOW spr round 20 (radius: 5) [02:21:45 -5383.674859] SLOW spr round 21 (radius: 5) [02:21:57 -5383.519645] SLOW spr round 22 (radius: 5) [02:22:08 -5383.519635] SLOW spr round 23 (radius: 10) [02:22:19 -5383.519633] SLOW spr round 24 (radius: 15) [02:22:35 -5369.484520] SLOW spr round 25 (radius: 5) [02:22:49 -5334.189833] SLOW spr round 26 (radius: 5) [02:23:00 -5334.161859] SLOW spr round 27 (radius: 10) [02:23:11 -5334.159630] SLOW spr round 28 (radius: 15) [02:23:27 -5333.983071] SLOW spr round 29 (radius: 5) [02:23:40 -5333.983047] SLOW spr round 30 (radius: 10) [02:23:52 -5333.983047] SLOW spr round 31 (radius: 15) [02:24:07 -5333.983047] SLOW spr round 32 (radius: 20) [02:24:24 -5333.801001] SLOW spr round 33 (radius: 5) [02:24:37 -5333.800921] SLOW spr round 34 (radius: 10) [02:24:49 -5333.800911] SLOW spr round 35 (radius: 15) [02:25:05 -5333.800911] SLOW spr round 36 (radius: 20) [02:25:21 -5333.800911] SLOW spr round 37 (radius: 25) [02:25:36 -5331.718819] SLOW spr round 38 (radius: 5) [02:25:50 -5331.713059] SLOW spr round 39 (radius: 10) [02:26:02 -5331.711036] SLOW spr round 40 (radius: 15) [02:26:18 -5331.710080] SLOW spr round 41 (radius: 20) [02:26:34 -5331.709608] SLOW spr round 42 (radius: 25) [02:26:49 -5331.709364] Model parameter optimization (eps = 0.100000) [02:26:51] ML tree search #10, logLikelihood: -5331.224446 [02:26:51 -12004.206256] Initial branch length optimization [02:26:51 -9378.058517] Model parameter optimization (eps = 10.000000) [02:26:55 -9330.281879] AUTODETECT spr round 1 (radius: 5) [02:27:04 -7677.052481] AUTODETECT spr round 2 (radius: 10) [02:27:14 -6815.423878] AUTODETECT spr round 3 (radius: 15) [02:27:25 -6124.066594] AUTODETECT spr round 4 (radius: 20) [02:27:37 -5810.257948] AUTODETECT spr round 5 (radius: 25) [02:27:51 -5465.618893] SPR radius for FAST iterations: 25 (autodetect) [02:27:51 -5465.618893] Model parameter optimization (eps = 3.000000) [02:27:56 -5438.497608] FAST spr round 1 (radius: 25) [02:28:07 -4815.606373] FAST spr round 2 (radius: 25) [02:28:17 -4779.755026] FAST spr round 3 (radius: 25) [02:28:27 -4771.032073] FAST spr round 4 (radius: 25) [02:28:36 -4771.030584] Model parameter optimization (eps = 1.000000) [02:28:37 -4770.490640] SLOW spr round 1 (radius: 5) [02:28:48 -4768.589792] SLOW spr round 2 (radius: 5) [02:28:59 -4768.406217] SLOW spr round 3 (radius: 5) [02:29:10 -4768.405735] SLOW spr round 4 (radius: 10) [02:29:21 -4727.705776] SLOW spr round 5 (radius: 5) [02:29:34 -4726.840629] SLOW spr round 6 (radius: 5) [02:29:46 -4726.840166] SLOW spr round 7 (radius: 10) [02:29:57 -4726.152741] SLOW spr round 8 (radius: 5) [02:30:10 -4726.152716] SLOW spr round 9 (radius: 10) [02:30:21 -4726.152696] SLOW spr round 10 (radius: 15) [02:30:38 -4711.452689] SLOW spr round 11 (radius: 5) [02:30:51 -4711.406247] SLOW spr round 12 (radius: 10) [02:31:03 -4711.029882] SLOW spr round 13 (radius: 5) [02:31:16 -4709.720071] SLOW spr round 14 (radius: 5) [02:31:27 -4709.719663] SLOW spr round 15 (radius: 10) [02:31:38 -4709.719569] SLOW spr round 16 (radius: 15) [02:31:55 -4707.679112] SLOW spr round 17 (radius: 5) [02:32:08 -4706.017957] SLOW spr round 18 (radius: 5) [02:32:20 -4706.017862] SLOW spr round 19 (radius: 10) [02:32:31 -4706.017841] SLOW spr round 20 (radius: 15) [02:32:47 -4706.017826] SLOW spr round 21 (radius: 20) [02:33:06 -4702.600386] SLOW spr round 22 (radius: 5) [02:33:19 -4702.599274] SLOW spr round 23 (radius: 10) [02:33:31 -4702.598747] SLOW spr round 24 (radius: 15) [02:33:46 -4702.598714] SLOW spr round 25 (radius: 20) [02:34:05 -4701.508148] SLOW spr round 26 (radius: 5) [02:34:18 -4701.508127] SLOW spr round 27 (radius: 10) [02:34:30 -4701.508112] SLOW spr round 28 (radius: 15) [02:34:45 -4701.508097] SLOW spr round 29 (radius: 20) [02:35:04 -4701.508083] SLOW spr round 30 (radius: 25) [02:35:23 -4700.363642] SLOW spr round 31 (radius: 5) [02:35:37 -4700.222909] SLOW spr round 32 (radius: 5) [02:35:48 -4700.222840] SLOW spr round 33 (radius: 10) [02:35:59 -4700.222817] SLOW spr round 34 (radius: 15) [02:36:15 -4700.149077] SLOW spr round 35 (radius: 20) [02:36:34 -4700.147611] SLOW spr round 36 (radius: 25) [02:36:53 -4700.085354] Model parameter optimization (eps = 0.100000) [02:36:55] ML tree search #11, logLikelihood: -4699.357268 [02:36:55 -12030.771997] Initial branch length optimization [02:36:55 -9355.489606] Model parameter optimization (eps = 10.000000) [02:36:58 -9309.980813] AUTODETECT spr round 1 (radius: 5) [02:37:06 -7746.886477] AUTODETECT spr round 2 (radius: 10) [02:37:16 -6702.202004] AUTODETECT spr round 3 (radius: 15) [02:37:27 -5939.710656] AUTODETECT spr round 4 (radius: 20) [02:37:39 -5395.872579] AUTODETECT spr round 5 (radius: 25) [02:37:54 -5205.356162] SPR radius for FAST iterations: 25 (autodetect) [02:37:54 -5205.356162] Model parameter optimization (eps = 3.000000) [02:37:59 -5176.088388] FAST spr round 1 (radius: 25) [02:38:09 -4772.897312] FAST spr round 2 (radius: 25) [02:38:19 -4756.284145] FAST spr round 3 (radius: 25) [02:38:28 -4753.416222] FAST spr round 4 (radius: 25) [02:38:37 -4752.271642] FAST spr round 5 (radius: 25) [02:38:46 -4752.271475] Model parameter optimization (eps = 1.000000) [02:38:47 -4752.268198] SLOW spr round 1 (radius: 5) [02:38:58 -4751.974186] SLOW spr round 2 (radius: 5) [02:39:09 -4751.884707] SLOW spr round 3 (radius: 10) [02:39:20 -4750.251701] SLOW spr round 4 (radius: 5) [02:39:33 -4750.251640] SLOW spr round 5 (radius: 10) [02:39:44 -4748.834309] SLOW spr round 6 (radius: 5) [02:39:57 -4747.648534] SLOW spr round 7 (radius: 5) [02:40:08 -4747.648525] SLOW spr round 8 (radius: 10) [02:40:19 -4747.470141] SLOW spr round 9 (radius: 5) [02:40:32 -4747.461964] SLOW spr round 10 (radius: 10) [02:40:43 -4747.459488] SLOW spr round 11 (radius: 15) [02:40:58 -4713.304033] SLOW spr round 12 (radius: 5) [02:41:12 -4708.404749] SLOW spr round 13 (radius: 5) [02:41:23 -4708.404418] SLOW spr round 14 (radius: 10) [02:41:34 -4708.404400] SLOW spr round 15 (radius: 15) [02:41:49 -4700.228934] SLOW spr round 16 (radius: 5) [02:42:03 -4700.227776] SLOW spr round 17 (radius: 10) [02:42:14 -4700.227515] SLOW spr round 18 (radius: 15) [02:42:29 -4699.775332] SLOW spr round 19 (radius: 5) [02:42:42 -4699.775187] SLOW spr round 20 (radius: 10) [02:42:54 -4699.775182] SLOW spr round 21 (radius: 15) [02:43:09 -4699.775182] SLOW spr round 22 (radius: 20) [02:43:28 -4696.637108] SLOW spr round 23 (radius: 5) [02:43:42 -4696.124918] SLOW spr round 24 (radius: 5) [02:43:54 -4696.124881] SLOW spr round 25 (radius: 10) [02:44:04 -4696.124876] SLOW spr round 26 (radius: 15) [02:44:20 -4696.124876] SLOW spr round 27 (radius: 20) [02:44:39 -4696.124307] SLOW spr round 28 (radius: 25) [02:45:00 -4691.234330] SLOW spr round 29 (radius: 5) [02:45:14 -4688.901694] SLOW spr round 30 (radius: 5) [02:45:26 -4688.827391] SLOW spr round 31 (radius: 10) [02:45:37 -4688.826371] SLOW spr round 32 (radius: 15) [02:45:53 -4688.825585] SLOW spr round 33 (radius: 20) [02:46:11 -4688.825583] SLOW spr round 34 (radius: 25) [02:46:32 -4688.825582] Model parameter optimization (eps = 0.100000) [02:46:34] ML tree search #12, logLikelihood: -4688.471968 [02:46:34 -12087.181465] Initial branch length optimization [02:46:34 -9455.032219] Model parameter optimization (eps = 10.000000) [02:46:39 -9391.357431] AUTODETECT spr round 1 (radius: 5) [02:46:47 -7667.311401] AUTODETECT spr round 2 (radius: 10) [02:46:57 -6670.684677] AUTODETECT spr round 3 (radius: 15) [02:47:09 -5972.274415] AUTODETECT spr round 4 (radius: 20) [02:47:22 -5477.674431] AUTODETECT spr round 5 (radius: 25) [02:47:37 -5279.613646] SPR radius for FAST iterations: 25 (autodetect) [02:47:37 -5279.613646] Model parameter optimization (eps = 3.000000) [02:47:41 -5255.990216] FAST spr round 1 (radius: 25) [02:47:52 -4883.349572] FAST spr round 2 (radius: 25) [02:48:02 -4837.598124] FAST spr round 3 (radius: 25) [02:48:11 -4828.228584] FAST spr round 4 (radius: 25) [02:48:20 -4827.867907] FAST spr round 5 (radius: 25) [02:48:29 -4827.867514] Model parameter optimization (eps = 1.000000) [02:48:30 -4827.265001] SLOW spr round 1 (radius: 5) [02:48:41 -4826.379166] SLOW spr round 2 (radius: 5) [02:48:52 -4824.482550] SLOW spr round 3 (radius: 5) [02:49:03 -4824.481976] SLOW spr round 4 (radius: 10) [02:49:14 -4823.610007] SLOW spr round 5 (radius: 5) [02:49:27 -4823.609455] SLOW spr round 6 (radius: 10) [02:49:39 -4820.828341] SLOW spr round 7 (radius: 5) [02:49:51 -4820.828108] SLOW spr round 8 (radius: 10) [02:50:03 -4820.828084] SLOW spr round 9 (radius: 15) [02:50:20 -4809.907814] SLOW spr round 10 (radius: 5) [02:50:34 -4805.053192] SLOW spr round 11 (radius: 5) [02:50:46 -4804.818905] SLOW spr round 12 (radius: 5) [02:50:56 -4804.815528] SLOW spr round 13 (radius: 10) [02:51:07 -4804.814281] SLOW spr round 14 (radius: 15) [02:51:25 -4787.939784] SLOW spr round 15 (radius: 5) [02:51:39 -4774.801014] SLOW spr round 16 (radius: 5) [02:51:50 -4774.779669] SLOW spr round 17 (radius: 10) [02:52:01 -4774.779259] SLOW spr round 18 (radius: 15) [02:52:18 -4771.217176] SLOW spr round 19 (radius: 5) [02:52:32 -4771.217144] SLOW spr round 20 (radius: 10) [02:52:43 -4771.217139] SLOW spr round 21 (radius: 15) [02:53:00 -4771.217139] SLOW spr round 22 (radius: 20) [02:53:21 -4731.213845] SLOW spr round 23 (radius: 5) [02:53:35 -4700.991627] SLOW spr round 24 (radius: 5) [02:53:47 -4698.732673] SLOW spr round 25 (radius: 5) [02:53:58 -4698.732647] SLOW spr round 26 (radius: 10) [02:54:08 -4698.153040] SLOW spr round 27 (radius: 5) [02:54:21 -4698.152709] SLOW spr round 28 (radius: 10) [02:54:33 -4698.152707] SLOW spr round 29 (radius: 15) [02:54:48 -4693.831714] SLOW spr round 30 (radius: 5) [02:55:01 -4693.590970] SLOW spr round 31 (radius: 5) [02:55:12 -4693.589666] SLOW spr round 32 (radius: 10) [02:55:23 -4693.589665] SLOW spr round 33 (radius: 15) [02:55:39 -4692.983386] SLOW spr round 34 (radius: 5) [02:55:52 -4692.983175] SLOW spr round 35 (radius: 10) [02:56:04 -4692.983161] SLOW spr round 36 (radius: 15) [02:56:19 -4692.983159] SLOW spr round 37 (radius: 20) [02:56:38 -4691.439662] SLOW spr round 38 (radius: 5) [02:56:52 -4689.629099] SLOW spr round 39 (radius: 5) [02:57:04 -4689.627293] SLOW spr round 40 (radius: 10) [02:57:15 -4689.627284] SLOW spr round 41 (radius: 15) [02:57:30 -4689.627284] SLOW spr round 42 (radius: 20) [02:57:48 -4689.627284] SLOW spr round 43 (radius: 25) [02:58:07 -4689.306905] SLOW spr round 44 (radius: 5) [02:58:21 -4689.306905] SLOW spr round 45 (radius: 10) [02:58:33 -4689.306905] SLOW spr round 46 (radius: 15) [02:58:48 -4689.306905] SLOW spr round 47 (radius: 20) [02:59:06 -4689.306905] SLOW spr round 48 (radius: 25) [02:59:25 -4684.525977] SLOW spr round 49 (radius: 5) [02:59:39 -4684.450891] SLOW spr round 50 (radius: 10) [02:59:51 -4684.450888] SLOW spr round 51 (radius: 15) [03:00:06 -4684.450888] SLOW spr round 52 (radius: 20) [03:00:25 -4684.450888] SLOW spr round 53 (radius: 25) [03:00:43 -4684.450888] Model parameter optimization (eps = 0.100000) [03:00:45] ML tree search #13, logLikelihood: -4684.198399 [03:00:45 -12148.615233] Initial branch length optimization [03:00:45 -9335.853076] Model parameter optimization (eps = 10.000000) [03:00:49 -9306.457047] AUTODETECT spr round 1 (radius: 5) [03:00:58 -7639.325643] AUTODETECT spr round 2 (radius: 10) [03:01:07 -6819.733571] AUTODETECT spr round 3 (radius: 15) [03:01:19 -6212.545758] AUTODETECT spr round 4 (radius: 20) [03:01:30 -5738.635852] AUTODETECT spr round 5 (radius: 25) [03:01:44 -5394.629877] SPR radius for FAST iterations: 25 (autodetect) [03:01:44 -5394.629877] Model parameter optimization (eps = 3.000000) [03:01:48 -5363.814324] FAST spr round 1 (radius: 25) [03:01:59 -4869.048669] FAST spr round 2 (radius: 25) [03:02:09 -4828.205821] FAST spr round 3 (radius: 25) [03:02:19 -4816.699787] FAST spr round 4 (radius: 25) [03:02:28 -4815.274927] FAST spr round 5 (radius: 25) [03:02:37 -4815.230925] Model parameter optimization (eps = 1.000000) [03:02:40 -4814.102853] SLOW spr round 1 (radius: 5) [03:02:51 -4805.645332] SLOW spr round 2 (radius: 5) [03:03:02 -4804.632229] SLOW spr round 3 (radius: 5) [03:03:13 -4804.446014] SLOW spr round 4 (radius: 5) [03:03:23 -4804.445565] SLOW spr round 5 (radius: 10) [03:03:34 -4802.863695] SLOW spr round 6 (radius: 5) [03:03:47 -4802.104281] SLOW spr round 7 (radius: 5) [03:03:58 -4802.104245] SLOW spr round 8 (radius: 10) [03:04:09 -4800.465784] SLOW spr round 9 (radius: 5) [03:04:22 -4800.463952] SLOW spr round 10 (radius: 10) [03:04:34 -4798.908915] SLOW spr round 11 (radius: 5) [03:04:46 -4797.536189] SLOW spr round 12 (radius: 5) [03:04:58 -4789.905487] SLOW spr round 13 (radius: 5) [03:05:09 -4786.870008] SLOW spr round 14 (radius: 5) [03:05:20 -4784.203891] SLOW spr round 15 (radius: 5) [03:05:31 -4784.203609] SLOW spr round 16 (radius: 10) [03:05:41 -4783.915640] SLOW spr round 17 (radius: 5) [03:05:54 -4783.583453] SLOW spr round 18 (radius: 5) [03:06:06 -4783.580533] SLOW spr round 19 (radius: 10) [03:06:17 -4783.579346] SLOW spr round 20 (radius: 15) [03:06:35 -4730.792926] SLOW spr round 21 (radius: 5) [03:06:48 -4726.501653] SLOW spr round 22 (radius: 5) [03:07:00 -4726.500151] SLOW spr round 23 (radius: 10) [03:07:11 -4726.500149] SLOW spr round 24 (radius: 15) [03:07:28 -4726.500149] SLOW spr round 25 (radius: 20) [03:07:50 -4723.632391] SLOW spr round 26 (radius: 5) [03:08:03 -4723.630579] SLOW spr round 27 (radius: 10) [03:08:15 -4722.651952] SLOW spr round 28 (radius: 5) [03:08:28 -4722.650804] SLOW spr round 29 (radius: 10) [03:08:39 -4722.650706] SLOW spr round 30 (radius: 15) [03:08:57 -4722.040314] SLOW spr round 31 (radius: 5) [03:09:10 -4722.038282] SLOW spr round 32 (radius: 10) [03:09:22 -4722.037551] SLOW spr round 33 (radius: 15) [03:09:39 -4722.037274] SLOW spr round 34 (radius: 20) [03:09:59 -4720.154934] SLOW spr round 35 (radius: 5) [03:10:13 -4720.154882] SLOW spr round 36 (radius: 10) [03:10:25 -4720.154876] SLOW spr round 37 (radius: 15) [03:10:42 -4720.154875] SLOW spr round 38 (radius: 20) [03:11:03 -4720.154875] SLOW spr round 39 (radius: 25) [03:11:23 -4717.075618] SLOW spr round 40 (radius: 5) [03:11:37 -4716.250977] SLOW spr round 41 (radius: 5) [03:11:49 -4716.250410] SLOW spr round 42 (radius: 10) [03:12:01 -4716.250280] SLOW spr round 43 (radius: 15) [03:12:18 -4716.182605] SLOW spr round 44 (radius: 20) [03:12:38 -4716.181237] SLOW spr round 45 (radius: 25) [03:12:58 -4716.181236] Model parameter optimization (eps = 0.100000) [03:13:00] ML tree search #14, logLikelihood: -4715.769643 [03:13:00 -12057.237096] Initial branch length optimization [03:13:01 -9475.954038] Model parameter optimization (eps = 10.000000) [03:13:04 -9413.784425] AUTODETECT spr round 1 (radius: 5) [03:13:12 -7673.702112] AUTODETECT spr round 2 (radius: 10) [03:13:22 -6769.747845] AUTODETECT spr round 3 (radius: 15) [03:13:34 -6072.797986] AUTODETECT spr round 4 (radius: 20) [03:13:46 -5506.706562] AUTODETECT spr round 5 (radius: 25) [03:13:59 -5279.834990] SPR radius for FAST iterations: 25 (autodetect) [03:13:59 -5279.834990] Model parameter optimization (eps = 3.000000) [03:14:04 -5249.093189] FAST spr round 1 (radius: 25) [03:14:15 -4844.139287] FAST spr round 2 (radius: 25) [03:14:24 -4815.013500] FAST spr round 3 (radius: 25) [03:14:34 -4806.652114] FAST spr round 4 (radius: 25) [03:14:43 -4806.238519] FAST spr round 5 (radius: 25) [03:14:52 -4806.187534] Model parameter optimization (eps = 1.000000) [03:14:55 -4805.444684] SLOW spr round 1 (radius: 5) [03:15:06 -4804.007918] SLOW spr round 2 (radius: 5) [03:15:16 -4803.986954] SLOW spr round 3 (radius: 10) [03:15:27 -4797.174307] SLOW spr round 4 (radius: 5) [03:15:40 -4795.885217] SLOW spr round 5 (radius: 5) [03:15:52 -4795.875539] SLOW spr round 6 (radius: 10) [03:16:03 -4795.875456] SLOW spr round 7 (radius: 15) [03:16:20 -4784.030961] SLOW spr round 8 (radius: 5) [03:16:33 -4781.050967] SLOW spr round 9 (radius: 5) [03:16:45 -4779.129608] SLOW spr round 10 (radius: 5) [03:16:56 -4779.123885] SLOW spr round 11 (radius: 10) [03:17:07 -4779.121878] SLOW spr round 12 (radius: 15) [03:17:24 -4739.319241] SLOW spr round 13 (radius: 5) [03:17:37 -4723.848747] SLOW spr round 14 (radius: 5) [03:17:49 -4723.848701] SLOW spr round 15 (radius: 10) [03:17:59 -4723.848692] SLOW spr round 16 (radius: 15) [03:18:15 -4719.353124] SLOW spr round 17 (radius: 5) [03:18:28 -4719.353122] SLOW spr round 18 (radius: 10) [03:18:40 -4719.353121] SLOW spr round 19 (radius: 15) [03:18:55 -4719.353120] SLOW spr round 20 (radius: 20) [03:19:15 -4714.623715] SLOW spr round 21 (radius: 5) [03:19:29 -4708.700524] SLOW spr round 22 (radius: 5) [03:19:41 -4707.614432] SLOW spr round 23 (radius: 5) [03:19:52 -4706.872904] SLOW spr round 24 (radius: 5) [03:20:02 -4706.848617] SLOW spr round 25 (radius: 10) [03:20:13 -4705.315099] SLOW spr round 26 (radius: 5) [03:20:26 -4705.315065] SLOW spr round 27 (radius: 10) [03:20:37 -4705.260392] SLOW spr round 28 (radius: 15) [03:20:53 -4701.619553] SLOW spr round 29 (radius: 5) [03:21:06 -4701.568912] SLOW spr round 30 (radius: 10) [03:21:18 -4701.568634] SLOW spr round 31 (radius: 15) [03:21:33 -4701.568618] SLOW spr round 32 (radius: 20) [03:21:52 -4699.400261] SLOW spr round 33 (radius: 5) [03:22:06 -4699.397123] SLOW spr round 34 (radius: 10) [03:22:18 -4699.396876] SLOW spr round 35 (radius: 15) [03:22:33 -4699.396844] SLOW spr round 36 (radius: 20) [03:22:51 -4699.365669] SLOW spr round 37 (radius: 25) [03:23:12 -4688.924479] SLOW spr round 38 (radius: 5) [03:23:26 -4686.918197] SLOW spr round 39 (radius: 5) [03:23:37 -4686.916382] SLOW spr round 40 (radius: 10) [03:23:48 -4686.916336] SLOW spr round 41 (radius: 15) [03:24:04 -4686.916336] SLOW spr round 42 (radius: 20) [03:24:22 -4686.916335] SLOW spr round 43 (radius: 25) [03:24:42 -4686.916335] Model parameter optimization (eps = 0.100000) [03:24:47] ML tree search #15, logLikelihood: -4685.603509 [03:24:47 -12079.539556] Initial branch length optimization [03:24:47 -9331.722929] Model parameter optimization (eps = 10.000000) [03:24:50 -9291.712639] AUTODETECT spr round 1 (radius: 5) [03:24:58 -7596.947232] AUTODETECT spr round 2 (radius: 10) [03:25:08 -6718.271263] AUTODETECT spr round 3 (radius: 15) [03:25:19 -6195.590099] AUTODETECT spr round 4 (radius: 20) [03:25:31 -5941.918411] AUTODETECT spr round 5 (radius: 25) [03:25:44 -5482.399105] SPR radius for FAST iterations: 25 (autodetect) [03:25:44 -5482.399105] Model parameter optimization (eps = 3.000000) [03:25:47 -5457.435310] FAST spr round 1 (radius: 25) [03:25:59 -4922.298688] FAST spr round 2 (radius: 25) [03:26:09 -4888.924836] FAST spr round 3 (radius: 25) [03:26:18 -4881.827406] FAST spr round 4 (radius: 25) [03:26:27 -4881.496239] FAST spr round 5 (radius: 25) [03:26:36 -4880.296248] FAST spr round 6 (radius: 25) [03:26:45 -4879.403165] FAST spr round 7 (radius: 25) [03:26:54 -4879.403071] Model parameter optimization (eps = 1.000000) [03:26:58 -4877.474166] SLOW spr round 1 (radius: 5) [03:27:09 -4872.225104] SLOW spr round 2 (radius: 5) [03:27:20 -4872.162764] SLOW spr round 3 (radius: 10) [03:27:31 -4869.491279] SLOW spr round 4 (radius: 5) [03:27:44 -4869.485790] SLOW spr round 5 (radius: 10) [03:27:56 -4866.678259] SLOW spr round 6 (radius: 5) [03:28:10 -4862.491829] SLOW spr round 7 (radius: 5) [03:28:21 -4861.855750] SLOW spr round 8 (radius: 5) [03:28:32 -4861.855293] SLOW spr round 9 (radius: 10) [03:28:43 -4861.855281] SLOW spr round 10 (radius: 15) [03:29:00 -4795.886602] SLOW spr round 11 (radius: 5) [03:29:14 -4792.702340] SLOW spr round 12 (radius: 5) [03:29:26 -4792.701661] SLOW spr round 13 (radius: 10) [03:29:37 -4792.371068] SLOW spr round 14 (radius: 5) [03:29:50 -4792.370820] SLOW spr round 15 (radius: 10) [03:30:02 -4792.370791] SLOW spr round 16 (radius: 15) [03:30:19 -4790.176645] SLOW spr round 17 (radius: 5) [03:30:33 -4790.176158] SLOW spr round 18 (radius: 10) [03:30:45 -4790.176052] SLOW spr round 19 (radius: 15) [03:31:02 -4789.496817] SLOW spr round 20 (radius: 5) [03:31:16 -4788.717985] SLOW spr round 21 (radius: 5) [03:31:28 -4788.687654] SLOW spr round 22 (radius: 10) [03:31:39 -4788.686573] SLOW spr round 23 (radius: 15) [03:31:57 -4787.658731] SLOW spr round 24 (radius: 5) [03:32:11 -4787.519252] SLOW spr round 25 (radius: 5) [03:32:22 -4787.518090] SLOW spr round 26 (radius: 10) [03:32:34 -4787.517523] SLOW spr round 27 (radius: 15) [03:32:52 -4787.517235] SLOW spr round 28 (radius: 20) [03:33:12 -4715.610460] SLOW spr round 29 (radius: 5) [03:33:27 -4698.762934] SLOW spr round 30 (radius: 5) [03:33:39 -4694.888675] SLOW spr round 31 (radius: 5) [03:33:50 -4694.887701] SLOW spr round 32 (radius: 10) [03:34:02 -4690.079646] SLOW spr round 33 (radius: 5) [03:34:15 -4685.850138] SLOW spr round 34 (radius: 5) [03:34:27 -4685.294627] SLOW spr round 35 (radius: 5) [03:34:38 -4685.294451] SLOW spr round 36 (radius: 10) [03:34:48 -4685.294406] SLOW spr round 37 (radius: 15) [03:35:06 -4683.834324] SLOW spr round 38 (radius: 5) [03:35:20 -4683.373528] SLOW spr round 39 (radius: 5) [03:35:32 -4683.373418] SLOW spr round 40 (radius: 10) [03:35:43 -4683.373413] SLOW spr round 41 (radius: 15) [03:36:00 -4683.373410] SLOW spr round 42 (radius: 20) [03:36:20 -4681.716547] SLOW spr round 43 (radius: 5) [03:36:34 -4681.690703] SLOW spr round 44 (radius: 10) [03:36:46 -4681.491976] SLOW spr round 45 (radius: 5) [03:36:59 -4681.491796] SLOW spr round 46 (radius: 10) [03:37:11 -4681.491796] SLOW spr round 47 (radius: 15) [03:37:28 -4681.491796] SLOW spr round 48 (radius: 20) [03:37:47 -4679.786977] SLOW spr round 49 (radius: 5) [03:38:01 -4679.786554] SLOW spr round 50 (radius: 10) [03:38:13 -4679.786395] SLOW spr round 51 (radius: 15) [03:38:30 -4679.786380] SLOW spr round 52 (radius: 20) [03:38:50 -4679.786377] SLOW spr round 53 (radius: 25) [03:39:11 -4677.695728] SLOW spr round 54 (radius: 5) [03:39:24 -4677.695728] SLOW spr round 55 (radius: 10) [03:39:37 -4677.695728] SLOW spr round 56 (radius: 15) [03:39:54 -4677.695728] SLOW spr round 57 (radius: 20) [03:40:13 -4677.695728] SLOW spr round 58 (radius: 25) [03:40:34 -4677.695728] Model parameter optimization (eps = 0.100000) [03:40:37] ML tree search #16, logLikelihood: -4677.200895 [03:40:37 -12031.383962] Initial branch length optimization [03:40:37 -9424.644691] Model parameter optimization (eps = 10.000000) [03:40:41 -9356.654888] AUTODETECT spr round 1 (radius: 5) [03:40:50 -7559.168939] AUTODETECT spr round 2 (radius: 10) [03:40:59 -6419.628680] AUTODETECT spr round 3 (radius: 15) [03:41:11 -5594.710801] AUTODETECT spr round 4 (radius: 20) [03:41:24 -5402.753359] AUTODETECT spr round 5 (radius: 25) [03:41:37 -5253.812132] SPR radius for FAST iterations: 25 (autodetect) [03:41:37 -5253.812132] Model parameter optimization (eps = 3.000000) [03:41:41 -5233.098460] FAST spr round 1 (radius: 25) [03:41:52 -4899.436461] FAST spr round 2 (radius: 25) [03:42:02 -4875.088242] FAST spr round 3 (radius: 25) [03:42:12 -4864.994614] FAST spr round 4 (radius: 25) [03:42:21 -4863.759486] FAST spr round 5 (radius: 25) [03:42:30 -4863.751254] Model parameter optimization (eps = 1.000000) [03:42:33 -4862.587505] SLOW spr round 1 (radius: 5) [03:42:45 -4861.896344] SLOW spr round 2 (radius: 5) [03:42:55 -4861.893989] SLOW spr round 3 (radius: 10) [03:43:06 -4854.430958] SLOW spr round 4 (radius: 5) [03:43:19 -4852.785644] SLOW spr round 5 (radius: 5) [03:43:31 -4852.783363] SLOW spr round 6 (radius: 10) [03:43:42 -4852.783121] SLOW spr round 7 (radius: 15) [03:43:58 -4811.601375] SLOW spr round 8 (radius: 5) [03:44:12 -4801.894688] SLOW spr round 9 (radius: 5) [03:44:23 -4800.883679] SLOW spr round 10 (radius: 5) [03:44:34 -4799.701422] SLOW spr round 11 (radius: 5) [03:44:44 -4799.701257] SLOW spr round 12 (radius: 10) [03:44:55 -4799.701167] SLOW spr round 13 (radius: 15) [03:45:12 -4774.722071] SLOW spr round 14 (radius: 5) [03:45:25 -4767.350798] SLOW spr round 15 (radius: 5) [03:45:37 -4767.211818] SLOW spr round 16 (radius: 5) [03:45:48 -4767.211052] SLOW spr round 17 (radius: 10) [03:45:58 -4767.210671] SLOW spr round 18 (radius: 15) [03:46:14 -4767.126212] SLOW spr round 19 (radius: 20) [03:46:33 -4763.955141] SLOW spr round 20 (radius: 5) [03:46:46 -4762.304329] SLOW spr round 21 (radius: 5) [03:46:58 -4762.303853] SLOW spr round 22 (radius: 10) [03:47:09 -4762.303827] SLOW spr round 23 (radius: 15) [03:47:24 -4761.412674] SLOW spr round 24 (radius: 5) [03:47:37 -4761.409807] SLOW spr round 25 (radius: 10) [03:47:49 -4756.698298] SLOW spr round 26 (radius: 5) [03:48:02 -4755.172131] SLOW spr round 27 (radius: 5) [03:48:13 -4755.171131] SLOW spr round 28 (radius: 10) [03:48:24 -4755.009896] SLOW spr round 29 (radius: 5) [03:48:36 -4755.009553] SLOW spr round 30 (radius: 10) [03:48:47 -4755.009518] SLOW spr round 31 (radius: 15) [03:49:03 -4755.009504] SLOW spr round 32 (radius: 20) [03:49:21 -4754.096765] SLOW spr round 33 (radius: 5) [03:49:35 -4754.092222] SLOW spr round 34 (radius: 10) [03:49:46 -4754.091921] SLOW spr round 35 (radius: 15) [03:50:02 -4754.091822] SLOW spr round 36 (radius: 20) [03:50:20 -4754.028471] SLOW spr round 37 (radius: 25) [03:50:39 -4721.294273] SLOW spr round 38 (radius: 5) [03:50:53 -4711.305124] SLOW spr round 39 (radius: 5) [03:51:04 -4711.305102] SLOW spr round 40 (radius: 10) [03:51:15 -4711.305101] SLOW spr round 41 (radius: 15) [03:51:31 -4711.305101] SLOW spr round 42 (radius: 20) [03:51:49 -4711.305101] SLOW spr round 43 (radius: 25) [03:52:08 -4709.945976] SLOW spr round 44 (radius: 5) [03:52:22 -4709.931497] SLOW spr round 45 (radius: 10) [03:52:34 -4709.927186] SLOW spr round 46 (radius: 15) [03:52:50 -4709.926665] SLOW spr round 47 (radius: 20) [03:53:10 -4709.687129] SLOW spr round 48 (radius: 5) [03:53:23 -4709.687032] SLOW spr round 49 (radius: 10) [03:53:35 -4709.687026] SLOW spr round 50 (radius: 15) [03:53:50 -4709.687025] SLOW spr round 51 (radius: 20) [03:54:10 -4709.687025] SLOW spr round 52 (radius: 25) [03:54:29 -4704.518743] SLOW spr round 53 (radius: 5) [03:54:43 -4704.466422] SLOW spr round 54 (radius: 10) [03:54:55 -4704.464475] SLOW spr round 55 (radius: 15) [03:55:11 -4704.464475] SLOW spr round 56 (radius: 20) [03:55:29 -4703.546862] SLOW spr round 57 (radius: 5) [03:55:43 -4703.546699] SLOW spr round 58 (radius: 10) [03:55:54 -4703.546695] SLOW spr round 59 (radius: 15) [03:56:10 -4703.546694] SLOW spr round 60 (radius: 20) [03:56:29 -4703.546694] SLOW spr round 61 (radius: 25) [03:56:47 -4703.546694] Model parameter optimization (eps = 0.100000) [03:56:49] ML tree search #17, logLikelihood: -4703.047189 [03:56:50 -11940.522503] Initial branch length optimization [03:56:50 -9259.482856] Model parameter optimization (eps = 10.000000) [03:56:55 -9195.324520] AUTODETECT spr round 1 (radius: 5) [03:57:03 -7653.819732] AUTODETECT spr round 2 (radius: 10) [03:57:13 -6591.150543] AUTODETECT spr round 3 (radius: 15) [03:57:24 -6172.325543] AUTODETECT spr round 4 (radius: 20) [03:57:36 -5730.259066] AUTODETECT spr round 5 (radius: 25) [03:57:50 -5308.404414] SPR radius for FAST iterations: 25 (autodetect) [03:57:50 -5308.404414] Model parameter optimization (eps = 3.000000) [03:57:56 -5278.253368] FAST spr round 1 (radius: 25) [03:58:07 -4839.146665] FAST spr round 2 (radius: 25) [03:58:17 -4811.922124] FAST spr round 3 (radius: 25) [03:58:26 -4810.857065] FAST spr round 4 (radius: 25) [03:58:35 -4810.856375] Model parameter optimization (eps = 1.000000) [03:58:37 -4809.928675] SLOW spr round 1 (radius: 5) [03:58:48 -4809.485025] SLOW spr round 2 (radius: 5) [03:58:59 -4809.282705] SLOW spr round 3 (radius: 5) [03:59:09 -4809.271503] SLOW spr round 4 (radius: 10) [03:59:21 -4798.873288] SLOW spr round 5 (radius: 5) [03:59:34 -4793.869410] SLOW spr round 6 (radius: 5) [03:59:45 -4793.429474] SLOW spr round 7 (radius: 5) [03:59:56 -4793.429219] SLOW spr round 8 (radius: 10) [04:00:07 -4793.429160] SLOW spr round 9 (radius: 15) [04:00:23 -4767.573349] SLOW spr round 10 (radius: 5) [04:00:37 -4766.272590] SLOW spr round 11 (radius: 5) [04:00:49 -4766.271851] SLOW spr round 12 (radius: 10) [04:01:00 -4765.623288] SLOW spr round 13 (radius: 5) [04:01:13 -4765.620898] SLOW spr round 14 (radius: 10) [04:01:24 -4765.620350] SLOW spr round 15 (radius: 15) [04:01:40 -4762.582011] SLOW spr round 16 (radius: 5) [04:01:54 -4755.037345] SLOW spr round 17 (radius: 5) [04:02:05 -4755.036182] SLOW spr round 18 (radius: 10) [04:02:16 -4754.139614] SLOW spr round 19 (radius: 5) [04:02:29 -4754.119452] SLOW spr round 20 (radius: 10) [04:02:41 -4754.118840] SLOW spr round 21 (radius: 15) [04:02:56 -4753.370409] SLOW spr round 22 (radius: 5) [04:03:09 -4753.369452] SLOW spr round 23 (radius: 10) [04:03:21 -4753.369416] SLOW spr round 24 (radius: 15) [04:03:36 -4753.369414] SLOW spr round 25 (radius: 20) [04:03:56 -4743.854349] SLOW spr round 26 (radius: 5) [04:04:10 -4739.706436] SLOW spr round 27 (radius: 5) [04:04:22 -4735.566112] SLOW spr round 28 (radius: 5) [04:04:33 -4734.600098] SLOW spr round 29 (radius: 5) [04:04:43 -4734.599496] SLOW spr round 30 (radius: 10) [04:04:54 -4734.599301] SLOW spr round 31 (radius: 15) [04:05:12 -4725.235201] SLOW spr round 32 (radius: 5) [04:05:25 -4725.165071] SLOW spr round 33 (radius: 10) [04:05:37 -4724.306891] SLOW spr round 34 (radius: 5) [04:05:49 -4724.306778] SLOW spr round 35 (radius: 10) [04:06:01 -4724.306773] SLOW spr round 36 (radius: 15) [04:06:17 -4724.306772] SLOW spr round 37 (radius: 20) [04:06:38 -4721.172033] SLOW spr round 38 (radius: 5) [04:06:51 -4720.942479] SLOW spr round 39 (radius: 5) [04:07:03 -4720.941895] SLOW spr round 40 (radius: 10) [04:07:14 -4718.818041] SLOW spr round 41 (radius: 5) [04:07:27 -4718.817817] SLOW spr round 42 (radius: 10) [04:07:39 -4718.817785] SLOW spr round 43 (radius: 15) [04:07:56 -4718.817779] SLOW spr round 44 (radius: 20) [04:08:17 -4716.056868] SLOW spr round 45 (radius: 5) [04:08:30 -4716.056618] SLOW spr round 46 (radius: 10) [04:08:42 -4716.056601] SLOW spr round 47 (radius: 15) [04:08:59 -4716.056601] SLOW spr round 48 (radius: 20) [04:09:20 -4716.056601] SLOW spr round 49 (radius: 25) [04:09:41 -4701.155314] SLOW spr round 50 (radius: 5) [04:09:55 -4700.567788] SLOW spr round 51 (radius: 5) [04:10:07 -4700.567746] SLOW spr round 52 (radius: 10) [04:10:18 -4700.567746] SLOW spr round 53 (radius: 15) [04:10:36 -4700.567746] SLOW spr round 54 (radius: 20) [04:10:56 -4700.567746] SLOW spr round 55 (radius: 25) [04:11:17 -4700.567744] Model parameter optimization (eps = 0.100000) [04:11:20] ML tree search #18, logLikelihood: -4699.317783 [04:11:20 -11997.868782] Initial branch length optimization [04:11:20 -9455.391418] Model parameter optimization (eps = 10.000000) [04:11:24 -9392.272299] AUTODETECT spr round 1 (radius: 5) [04:11:32 -7836.080984] AUTODETECT spr round 2 (radius: 10) [04:11:42 -6533.075221] AUTODETECT spr round 3 (radius: 15) [04:11:53 -5772.286856] AUTODETECT spr round 4 (radius: 20) [04:12:07 -5244.910400] AUTODETECT spr round 5 (radius: 25) [04:12:21 -5230.544596] SPR radius for FAST iterations: 25 (autodetect) [04:12:21 -5230.544596] Model parameter optimization (eps = 3.000000) [04:12:24 -5202.438751] FAST spr round 1 (radius: 25) [04:12:35 -4874.353191] FAST spr round 2 (radius: 25) [04:12:45 -4810.219560] FAST spr round 3 (radius: 25) [04:12:54 -4798.354972] FAST spr round 4 (radius: 25) [04:13:04 -4789.509047] FAST spr round 5 (radius: 25) [04:13:13 -4789.507761] Model parameter optimization (eps = 1.000000) [04:13:15 -4787.771992] SLOW spr round 1 (radius: 5) [04:13:26 -4786.880267] SLOW spr round 2 (radius: 5) [04:13:37 -4786.872039] SLOW spr round 3 (radius: 10) [04:13:48 -4784.616085] SLOW spr round 4 (radius: 5) [04:14:01 -4784.611493] SLOW spr round 5 (radius: 10) [04:14:13 -4782.486642] SLOW spr round 6 (radius: 5) [04:14:26 -4779.739131] SLOW spr round 7 (radius: 5) [04:14:37 -4779.738814] SLOW spr round 8 (radius: 10) [04:14:48 -4779.738657] SLOW spr round 9 (radius: 15) [04:15:04 -4771.414862] SLOW spr round 10 (radius: 5) [04:15:18 -4762.095752] SLOW spr round 11 (radius: 5) [04:15:30 -4760.847759] SLOW spr round 12 (radius: 5) [04:15:40 -4760.847071] SLOW spr round 13 (radius: 10) [04:15:51 -4752.265535] SLOW spr round 14 (radius: 5) [04:16:04 -4750.996217] SLOW spr round 15 (radius: 5) [04:16:15 -4750.996214] SLOW spr round 16 (radius: 10) [04:16:26 -4750.996212] SLOW spr round 17 (radius: 15) [04:16:42 -4750.749022] SLOW spr round 18 (radius: 5) [04:16:56 -4750.727505] SLOW spr round 19 (radius: 10) [04:17:07 -4747.127912] SLOW spr round 20 (radius: 5) [04:17:20 -4744.366327] SLOW spr round 21 (radius: 5) [04:17:31 -4744.366327] SLOW spr round 22 (radius: 10) [04:17:42 -4744.366327] SLOW spr round 23 (radius: 15) [04:17:58 -4744.366321] SLOW spr round 24 (radius: 20) [04:18:18 -4739.686544] SLOW spr round 25 (radius: 5) [04:18:32 -4739.682359] SLOW spr round 26 (radius: 10) [04:18:44 -4739.681946] SLOW spr round 27 (radius: 15) [04:18:59 -4738.946432] SLOW spr round 28 (radius: 5) [04:19:13 -4738.286415] SLOW spr round 29 (radius: 5) [04:19:24 -4738.286360] SLOW spr round 30 (radius: 10) [04:19:35 -4738.286355] SLOW spr round 31 (radius: 15) [04:19:52 -4717.507155] SLOW spr round 32 (radius: 5) [04:20:05 -4717.004063] SLOW spr round 33 (radius: 5) [04:20:17 -4717.003672] SLOW spr round 34 (radius: 10) [04:20:27 -4717.003663] SLOW spr round 35 (radius: 15) [04:20:44 -4710.017391] SLOW spr round 36 (radius: 5) [04:20:57 -4706.817163] SLOW spr round 37 (radius: 5) [04:21:08 -4706.817094] SLOW spr round 38 (radius: 10) [04:21:19 -4701.840566] SLOW spr round 39 (radius: 5) [04:21:32 -4699.051196] SLOW spr round 40 (radius: 5) [04:21:44 -4699.051158] SLOW spr round 41 (radius: 10) [04:21:55 -4699.051155] SLOW spr round 42 (radius: 15) [04:22:11 -4699.051152] SLOW spr round 43 (radius: 20) [04:22:30 -4698.207801] SLOW spr round 44 (radius: 5) [04:22:44 -4698.101216] SLOW spr round 45 (radius: 5) [04:22:56 -4698.101174] SLOW spr round 46 (radius: 10) [04:23:07 -4698.101174] SLOW spr round 47 (radius: 15) [04:23:23 -4698.101174] SLOW spr round 48 (radius: 20) [04:23:42 -4698.101174] SLOW spr round 49 (radius: 25) [04:24:04 -4694.347213] SLOW spr round 50 (radius: 5) [04:24:18 -4691.429093] SLOW spr round 51 (radius: 5) [04:24:29 -4691.426821] SLOW spr round 52 (radius: 10) [04:24:41 -4691.425157] SLOW spr round 53 (radius: 15) [04:24:57 -4689.648013] SLOW spr round 54 (radius: 5) [04:25:10 -4689.647089] SLOW spr round 55 (radius: 10) [04:25:22 -4689.646413] SLOW spr round 56 (radius: 15) [04:25:37 -4689.645921] SLOW spr round 57 (radius: 20) [04:25:57 -4688.216244] SLOW spr round 58 (radius: 5) [04:26:11 -4688.212612] SLOW spr round 59 (radius: 10) [04:26:23 -4688.212533] SLOW spr round 60 (radius: 15) [04:26:38 -4688.212523] SLOW spr round 61 (radius: 20) [04:26:58 -4688.212520] SLOW spr round 62 (radius: 25) [04:27:18 -4688.212520] Model parameter optimization (eps = 0.100000) [04:27:22] ML tree search #19, logLikelihood: -4687.686370 [04:27:22 -12016.797420] Initial branch length optimization [04:27:22 -9264.157114] Model parameter optimization (eps = 10.000000) [04:27:25 -9228.018981] AUTODETECT spr round 1 (radius: 5) [04:27:34 -7782.068166] AUTODETECT spr round 2 (radius: 10) [04:27:44 -6792.203935] AUTODETECT spr round 3 (radius: 15) [04:27:55 -5995.353646] AUTODETECT spr round 4 (radius: 20) [04:28:07 -5660.746015] AUTODETECT spr round 5 (radius: 25) [04:28:20 -5393.666695] SPR radius for FAST iterations: 25 (autodetect) [04:28:20 -5393.666695] Model parameter optimization (eps = 3.000000) [04:28:25 -5366.547023] FAST spr round 1 (radius: 25) [04:28:36 -4814.529422] FAST spr round 2 (radius: 25) [04:28:46 -4787.211444] FAST spr round 3 (radius: 25) [04:28:55 -4784.344845] FAST spr round 4 (radius: 25) [04:29:05 -4776.331382] FAST spr round 5 (radius: 25) [04:29:14 -4776.327733] Model parameter optimization (eps = 1.000000) [04:29:15 -4775.460439] SLOW spr round 1 (radius: 5) [04:29:26 -4762.909296] SLOW spr round 2 (radius: 5) [04:29:37 -4755.020368] SLOW spr round 3 (radius: 5) [04:29:48 -4753.900557] SLOW spr round 4 (radius: 5) [04:29:58 -4753.894184] SLOW spr round 5 (radius: 10) [04:30:10 -4748.125373] SLOW spr round 6 (radius: 5) [04:30:23 -4741.915594] SLOW spr round 7 (radius: 5) [04:30:34 -4740.224736] SLOW spr round 8 (radius: 5) [04:30:45 -4740.165385] SLOW spr round 9 (radius: 10) [04:30:56 -4738.508795] SLOW spr round 10 (radius: 5) [04:31:09 -4738.183500] SLOW spr round 11 (radius: 5) [04:31:20 -4738.179134] SLOW spr round 12 (radius: 10) [04:31:31 -4738.178037] SLOW spr round 13 (radius: 15) [04:31:47 -4735.084491] SLOW spr round 14 (radius: 5) [04:32:00 -4734.975332] SLOW spr round 15 (radius: 5) [04:32:12 -4734.974800] SLOW spr round 16 (radius: 10) [04:32:23 -4732.275503] SLOW spr round 17 (radius: 5) [04:32:35 -4732.275054] SLOW spr round 18 (radius: 10) [04:32:47 -4732.275052] SLOW spr round 19 (radius: 15) [04:33:01 -4732.275052] SLOW spr round 20 (radius: 20) [04:33:20 -4722.259817] SLOW spr round 21 (radius: 5) [04:33:33 -4722.258014] SLOW spr round 22 (radius: 10) [04:33:45 -4722.258013] SLOW spr round 23 (radius: 15) [04:33:59 -4722.258013] SLOW spr round 24 (radius: 20) [04:34:17 -4722.258013] SLOW spr round 25 (radius: 25) [04:34:38 -4708.620401] SLOW spr round 26 (radius: 5) [04:34:51 -4708.533379] SLOW spr round 27 (radius: 10) [04:35:04 -4708.532851] SLOW spr round 28 (radius: 15) [04:35:19 -4706.409909] SLOW spr round 29 (radius: 5) [04:35:32 -4706.409183] SLOW spr round 30 (radius: 10) [04:35:44 -4706.409105] SLOW spr round 31 (radius: 15) [04:35:59 -4706.409086] SLOW spr round 32 (radius: 20) [04:36:18 -4704.913883] SLOW spr round 33 (radius: 5) [04:36:32 -4704.413505] SLOW spr round 34 (radius: 5) [04:36:43 -4704.412612] SLOW spr round 35 (radius: 10) [04:36:54 -4704.412612] SLOW spr round 36 (radius: 15) [04:37:10 -4704.412612] SLOW spr round 37 (radius: 20) [04:37:29 -4704.412612] SLOW spr round 38 (radius: 25) [04:37:50 -4689.425449] SLOW spr round 39 (radius: 5) [04:38:03 -4689.425419] SLOW spr round 40 (radius: 10) [04:38:15 -4689.425418] SLOW spr round 41 (radius: 15) [04:38:30 -4689.425417] SLOW spr round 42 (radius: 20) [04:38:49 -4689.425417] SLOW spr round 43 (radius: 25) [04:39:10 -4689.425417] Model parameter optimization (eps = 0.100000) [04:39:12] ML tree search #20, logLikelihood: -4688.917509 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.399605,0.518649) (0.000400,0.745555) (0.399995,1.315588) (0.200001,1.331091) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -4675.601950 AIC score: 11021.203899 / AICc score: 1407141.203899 / BIC score: 11612.425817 Free parameters (model + branch lengths): 835 WARNING: Number of free parameters (K=835) is larger than alignment size (n=15). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 177 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NMS7/3_mltree/A6NMS7.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NMS7/3_mltree/A6NMS7.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NMS7/3_mltree/A6NMS7.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NMS7/3_mltree/A6NMS7.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NMS7/3_mltree/A6NMS7.raxml.log Analysis started: 08-Jul-2021 10:59:57 / finished: 08-Jul-2021 15:39:09 Elapsed time: 16752.651 seconds