RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 01-Jul-2021 11:32:20 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NI47/2_msa/A6NI47_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NI47/3_mltree/A6NI47 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NI47/2_msa/A6NI47_trimmed_msa.fasta
[00:00:00] Loaded alignment with 994 taxa and 45 sites

WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_G1RE75_G1RE75_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_G1PU53_G1PU53_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_G3HZS2_G3HZS2_CRIGR_10029 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_G3R7F9_G3R7F9_GORGO_9595 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_H2PE99_H2PE99_PONAB_9601 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_G1NDL4_G1NDL4_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_G1SQB3_G1SQB3_RABIT_9986 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_E2RR81_E2RR81_CANLF_9615 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_H2QQ51_H2QQ51_PANTR_9598 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_F7CR95_F7CR95_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_F1LWB9_F1LWB9_RAT_10116 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_I3NG76_I3NG76_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_H0VMD2_H0VMD2_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and sp_Q9ULJ7_ANR50_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_F7H1K0_F7H1K0_MACMU_9544 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_G3TDW7_G3TDW7_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_G3VYV3_G3VYV3_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_H0YUX9_H0YUX9_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_F6YYW4_F6YYW4_CALJA_9483 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_I3LD98_I3LD98_PIG_9823 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_D2HEA0_D2HEA0_AILME_9646 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_G7P687_G7P687_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_E1B7G6_E1B7G6_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_L5K7Z6_L5K7Z6_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_U3K0F9_U3K0F9_FICAL_59894 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_U3IJ93_U3IJ93_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A096NYI5_A0A096NYI5_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A091E0E5_A0A091E0E5_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A0D9S0M9_A0A0D9S0M9_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A0Q3PN20_A0A0Q3PN20_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A091EUN4_A0A091EUN4_CORBR_85066 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A093QHA6_A0A093QHA6_9PASS_328815 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A091VE49_A0A091VE49_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A087QKS1_A0A087QKS1_APTFO_9233 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A091VSL6_A0A091VSL6_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A099ZJ06_A0A099ZJ06_TINGU_94827 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A091GFV8_A0A091GFV8_9AVES_55661 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A099ZVA7_A0A099ZVA7_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A2I0MGU1_A0A2I0MGU1_COLLI_8932 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A093IB22_A0A093IB22_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A091IHK1_A0A091IHK1_CALAN_9244 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A1U7RII0_A0A1U7RII0_MESAU_10036 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A218UXQ1_A0A218UXQ1_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A2K5MH73_A0A2K5MH73_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A2K6D9V0_A0A2K6D9V0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A2K5YBY3_A0A2K5YBY3_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A2R9CD42_A0A2R9CD42_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A2U4AR74_A0A2U4AR74_TURTR_9739 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A2U3X075_A0A2U3X075_ODORO_9708 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A2Y9E5S2_A0A2Y9E5S2_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A2Y9KE62_A0A2Y9KE62_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A2Y9Q3C9_A0A2Y9Q3C9_DELLE_9749 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A2Y9F066_A0A2Y9F066_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A383ZBC3_A0A383ZBC3_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A0J9YUH2_A0A0J9YUH2_MOUSE_10090 and tr_A0A0J9YUZ3_A0A0J9YUZ3_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A0J9YUH2_A0A0J9YUH2_MOUSE_10090 and tr_A0A1D5RM70_A0A1D5RM70_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A0J9YUH2_A0A0J9YUH2_MOUSE_10090 and tr_D3Z1P8_D3Z1P8_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A0J9YUH2_A0A0J9YUH2_MOUSE_10090 and tr_E9Q637_E9Q637_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A0J9YUH2_A0A0J9YUH2_MOUSE_10090 and tr_Q8C646_Q8C646_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A1B0GRY3_A0A1B0GRY3_MOUSE_10090 and tr_A5H0M4_A5H0M4_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_M3YLH9_M3YLH9_MUSPF_9669 and tr_A0A2Y9II72_A0A2Y9II72_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G1RM56_G1RM56_NOMLE_61853 and tr_H2PPA2_H2PPA2_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1S0U3_G1S0U3_NOMLE_61853 and tr_H2NC43_H2NC43_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1S0U3_G1S0U3_NOMLE_61853 and tr_F7FM70_F7FM70_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1S0U3_G1S0U3_NOMLE_61853 and tr_A0A2I3MUY7_A0A2I3MUY7_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1S0U3_G1S0U3_NOMLE_61853 and tr_A0A0D9RFY7_A0A0D9RFY7_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1S0U3_G1S0U3_NOMLE_61853 and tr_A0A2K5N6E0_A0A2K5N6E0_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1S0U3_G1S0U3_NOMLE_61853 and tr_A0A2K6BC05_A0A2K6BC05_MACNE_9545 are exactly identical!
WARNING: Sequences tr_B6QCF1_B6QCF1_TALMQ_441960 and tr_A0A093VFZ7_A0A093VFZ7_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_G3SDY7_G3SDY7_GORGO_9595 and sp_Q9BXX2_AN30B_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3SF15_G3SF15_GORGO_9595 and tr_A0A2I3SVD9_A0A2I3SVD9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3SF15_G3SF15_GORGO_9595 and sp_Q92527_ANKR7_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3SF15_G3SF15_GORGO_9595 and tr_A0A2R8ZJB4_A0A2R8ZJB4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3SHS9_G3SHS9_GORGO_9595 and tr_H2PQ89_H2PQ89_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3SHS9_G3SHS9_GORGO_9595 and tr_H2R1F6_H2R1F6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H2NA10_H2NA10_PONAB_9601 and tr_H2Q1R5_H2Q1R5_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H2NA10_H2NA10_PONAB_9601 and sp_Q9UPS8_ANR26_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2NA10_H2NA10_PONAB_9601 and tr_A0A2R9CCJ6_A0A2R9CCJ6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2NS14_H2NS14_PONAB_9601 and sp_Q6NSI1_AR26L_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2PUE5_H2PUE5_PONAB_9601 and tr_H2QW47_H2QW47_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H2PUE5_H2PUE5_PONAB_9601 and sp_A5A3E0_POTEF_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2PUE5_H2PUE5_PONAB_9601 and sp_Q6S8J3_POTEE_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_B8N300_B8N300_ASPFN_332952 and tr_A0A2G7EL59_A0A2G7EL59_9EURO_656916 are exactly identical!
WARNING: Sequences tr_B8NP47_B8NP47_ASPFN_332952 and tr_Q2UN28_Q2UN28_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B8NP47_B8NP47_ASPFN_332952 and tr_A0A0F0I918_A0A0F0I918_ASPPU_1403190 are exactly identical!
WARNING: Sequences tr_B8NP47_B8NP47_ASPFN_332952 and tr_A0A1S9D6L7_A0A1S9D6L7_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_B8NQZ3_B8NQZ3_ASPFN_332952 and tr_A0A1S9DSF0_A0A1S9DSF0_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_E2QYJ6_E2QYJ6_CANLF_9615 and tr_H9GX26_H9GX26_CANLF_9615 are exactly identical!
WARNING: Sequences tr_E2R763_E2R763_CANLF_9615 and tr_H9GWF6_H9GWF6_CANLF_9615 are exactly identical!
WARNING: Sequences tr_A0A2I3RV68_A0A2I3RV68_PANTR_9598 and tr_H2QXB0_H2QXB0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3RYB5_A0A2I3RYB5_PANTR_9598 and tr_H2QIQ4_H2QIQ4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3RYB5_A0A2I3RYB5_PANTR_9598 and tr_A0A2R9BFN4_A0A2R9BFN4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3TQZ5_A0A2I3TQZ5_PANTR_9598 and sp_A7E2S9_A30BL_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3TX65_A0A2I3TX65_PANTR_9598 and sp_Q9H560_ANR19_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3TX65_A0A2I3TX65_PANTR_9598 and tr_A0A2R9B0Y1_A0A2R9B0Y1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2Q1R9_H2Q1R9_PANTR_9598 and tr_A0A2R8Z9E1_A0A2R8Z9E1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2Q911_H2Q911_PANTR_9598 and tr_H2R3T8_H2R3T8_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H2QE98_H2QE98_PANTR_9598 and sp_A6NC57_ANR62_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H9H7J4_H9H7J4_MONDO_13616 and tr_H9H7J5_H9H7J5_MONDO_13616 are exactly identical!
WARNING: Sequences tr_W5Q1Y5_W5Q1Y5_SHEEP_9940 and tr_E1BLC3_E1BLC3_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_F9G1X8_F9G1X8_FUSOF_660025 and tr_W7LJJ4_W7LJJ4_GIBM7_334819 are exactly identical!
WARNING: Sequences tr_F9G1X8_F9G1X8_FUSOF_660025 and tr_A0A2H3TE96_A0A2H3TE96_FUSOX_5507 are exactly identical!
WARNING: Sequences sp_A0A0A6YYL3_POTEB_HUMAN_9606 and sp_A0JP26_POTB3_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_A0A0A6YYL3_POTEB_HUMAN_9606 and sp_H3BUK9_POTB2_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_A6NI47_POTEM_HUMAN_9606 and sp_Q6S545_POTEH_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_A6NI47_POTEM_HUMAN_9606 and sp_Q6S5H5_POTEG_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P0CG38_POTEI_HUMAN_9606 and sp_P0CG39_POTEJ_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q4UJ75_A20A4_HUMAN_9606 and sp_Q5SQ80_A20A2_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q4UJ75_A20A4_HUMAN_9606 and sp_Q5TYW2_A20A1_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q4UJ75_A20A4_HUMAN_9606 and sp_Q5VUR7_A20A3_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q5JPF3_AN36C_HUMAN_9606 and sp_Q8N2N9_AN36B_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_Q2UGY0_Q2UGY0_ASPOR_510516 and tr_A0A1S9DZ77_A0A1S9DZ77_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_Q2UGY0_Q2UGY0_ASPOR_510516 and tr_A0A2G7FP25_A0A2G7FP25_9EURO_656916 are exactly identical!
WARNING: Sequences tr_A0A1D5QJP5_A0A1D5QJP5_MACMU_9544 and tr_A0A096MVX0_A0A096MVX0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5QJP5_A0A1D5QJP5_MACMU_9544 and tr_A0A0D9REH1_A0A0D9REH1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5QJP5_A0A1D5QJP5_MACMU_9544 and tr_A0A2K5KKK9_A0A2K5KKK9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5QJP5_A0A1D5QJP5_MACMU_9544 and tr_A0A2K6BGE0_A0A2K6BGE0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6YIC2_F6YIC2_MACMU_9544 and tr_G7PSS5_G7PSS5_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6YIC2_F6YIC2_MACMU_9544 and tr_A0A2K5L7L9_A0A2K5L7L9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6YIC2_F6YIC2_MACMU_9544 and tr_A0A2K6DPX2_A0A2K6DPX2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6YRT5_F6YRT5_MACMU_9544 and tr_A0A2K6BMD6_A0A2K6BMD6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7EQ89_F7EQ89_MACMU_9544 and tr_A0A2K6DX39_A0A2K6DX39_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7EQ89_F7EQ89_MACMU_9544 and tr_A0A2K5Y6T2_A0A2K5Y6T2_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7GS91_F7GS91_MACMU_9544 and tr_A0A096MSA4_A0A096MSA4_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7GS91_F7GS91_MACMU_9544 and tr_A0A2I3M3J6_A0A2I3M3J6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_H9H5I7_H9H5I7_MACMU_9544 and tr_A0A2K6AYT1_A0A2K6AYT1_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G7PEN4_G7PEN4_MACFA_9541 and tr_A0A2I3LLQ6_A0A2I3LLQ6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G7PEN4_G7PEN4_MACFA_9541 and tr_A0A0D9RHS0_A0A0D9RHS0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G7PEN4_G7PEN4_MACFA_9541 and tr_A0A2K5MLL3_A0A2K5MLL3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G7PEN4_G7PEN4_MACFA_9541 and tr_A0A2K6CC64_A0A2K6CC64_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G7PWC3_G7PWC3_MACFA_9541 and tr_A0A2K5MNE3_A0A2K5MNE3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G7PWC3_G7PWC3_MACFA_9541 and tr_A0A2K6C8C2_A0A2K6C8C2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G7PWC3_G7PWC3_MACFA_9541 and tr_A0A2K5Y8M5_A0A2K5Y8M5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_W2QWB3_W2QWB3_PHYPN_761204 and tr_W2KB29_W2KB29_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A0D9RFF1_A0A0D9RFF1_CHLSB_60711 and tr_A0A2K5LAR2_A0A2K5LAR2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A091EK82_A0A091EK82_CORBR_85066 and tr_A0A091XXZ1_A0A091XXZ1_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A091V476_A0A091V476_NIPNI_128390 and tr_A0A087RGP8_A0A087RGP8_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1S3KL71_A0A1S3KL71_SALSA_8030 and tr_A0A060X912_A0A060X912_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A2U3V8K6_A0A2U3V8K6_TURTR_9739 and tr_A0A2Y9PC31_A0A2Y9PC31_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4B6Y5_A0A2U4B6Y5_TURTR_9739 and tr_A0A2Y9T705_A0A2Y9T705_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2Y9T849_A0A2Y9T849_PHYCD_9755 and tr_A0A384B7F5_A0A384B7F5_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 141

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NI47/3_mltree/A6NI47.raxml.reduced.phy

Alignment comprises 1 partitions and 45 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 45 / 45
Gaps: 4.12 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NI47/3_mltree/A6NI47.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 994 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 45 / 3600
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -76771.417376] Initial branch length optimization
[00:00:01 -63475.594693] Model parameter optimization (eps = 10.000000)
[00:00:16 -63320.129383] AUTODETECT spr round 1 (radius: 5)
[00:01:29 -49650.262972] AUTODETECT spr round 2 (radius: 10)
[00:02:50 -40053.552894] AUTODETECT spr round 3 (radius: 15)
[00:04:20 -36797.218178] AUTODETECT spr round 4 (radius: 20)
[00:05:56 -34101.182149] AUTODETECT spr round 5 (radius: 25)
[00:07:41 -32867.565959] SPR radius for FAST iterations: 25 (autodetect)
[00:07:41 -32867.565959] Model parameter optimization (eps = 3.000000)
[00:07:44 -32866.718649] FAST spr round 1 (radius: 25)
[00:09:39 -30249.847791] FAST spr round 2 (radius: 25)
[00:11:07 -29713.865652] FAST spr round 3 (radius: 25)
[00:12:25 -29635.180388] FAST spr round 4 (radius: 25)
[00:13:37 -29604.693760] FAST spr round 5 (radius: 25)
[00:14:45 -29601.485614] FAST spr round 6 (radius: 25)
[00:15:53 -29596.581349] FAST spr round 7 (radius: 25)
[00:16:59 -29596.134375] FAST spr round 8 (radius: 25)
[00:18:03 -29596.133443] Model parameter optimization (eps = 1.000000)
[00:18:14 -29485.295628] SLOW spr round 1 (radius: 5)
[00:19:30 -29472.002485] SLOW spr round 2 (radius: 5)
[00:20:47 -29470.317318] SLOW spr round 3 (radius: 5)
[00:22:01 -29470.317264] SLOW spr round 4 (radius: 10)
[00:23:18 -29467.411218] SLOW spr round 5 (radius: 5)
[00:24:48 -29463.633054] SLOW spr round 6 (radius: 5)
[00:26:09 -29463.632536] SLOW spr round 7 (radius: 10)
[00:27:27 -29462.331897] SLOW spr round 8 (radius: 5)
[00:28:55 -29461.865885] SLOW spr round 9 (radius: 5)
[00:30:15 -29461.865594] SLOW spr round 10 (radius: 10)
[00:31:33 -29461.865580] SLOW spr round 11 (radius: 15)
[00:33:23 -29448.728283] SLOW spr round 12 (radius: 5)
[00:34:55 -29439.559832] SLOW spr round 13 (radius: 5)
[00:36:19 -29437.707033] SLOW spr round 14 (radius: 5)
[00:37:38 -29437.009765] SLOW spr round 15 (radius: 5)
[00:38:54 -29437.009539] SLOW spr round 16 (radius: 10)
[00:40:11 -29435.974888] SLOW spr round 17 (radius: 5)
[00:41:38 -29431.518179] SLOW spr round 18 (radius: 5)
[00:42:59 -29429.204144] SLOW spr round 19 (radius: 5)
[00:44:16 -29429.204143] SLOW spr round 20 (radius: 10)
[00:45:32 -29429.204142] SLOW spr round 21 (radius: 15)
[00:47:20 -29429.204139] SLOW spr round 22 (radius: 20)
[00:49:31 -29424.311923] SLOW spr round 23 (radius: 5)
[00:51:04 -29419.665454] SLOW spr round 24 (radius: 5)
[00:52:29 -29418.841383] SLOW spr round 25 (radius: 5)
[00:53:48 -29418.841359] SLOW spr round 26 (radius: 10)
[00:55:06 -29417.187438] SLOW spr round 27 (radius: 5)
[00:56:32 -29417.187210] SLOW spr round 28 (radius: 10)
[00:57:54 -29417.187203] SLOW spr round 29 (radius: 15)
[00:59:38 -29414.977581] SLOW spr round 30 (radius: 5)
[01:01:08 -29414.977572] SLOW spr round 31 (radius: 10)
[01:02:33 -29414.977570] SLOW spr round 32 (radius: 15)
[01:04:15 -29414.977568] SLOW spr round 33 (radius: 20)
[01:06:24 -29414.977567] SLOW spr round 34 (radius: 25)
[01:08:44 -29413.808009] SLOW spr round 35 (radius: 5)
[01:10:17 -29413.590223] SLOW spr round 36 (radius: 5)
[01:11:41 -29413.589989] SLOW spr round 37 (radius: 10)
[01:13:00 -29413.189841] SLOW spr round 38 (radius: 5)
[01:14:26 -29413.189839] SLOW spr round 39 (radius: 10)
[01:15:48 -29413.189837] SLOW spr round 40 (radius: 15)
[01:17:30 -29413.189835] SLOW spr round 41 (radius: 20)
[01:19:40 -29409.529928] SLOW spr round 42 (radius: 5)
[01:21:12 -29408.279776] SLOW spr round 43 (radius: 5)
[01:22:35 -29408.279754] SLOW spr round 44 (radius: 10)
[01:23:54 -29405.034063] SLOW spr round 45 (radius: 5)
[01:25:21 -29405.031170] SLOW spr round 46 (radius: 10)
[01:26:43 -29405.031130] SLOW spr round 47 (radius: 15)
[01:28:27 -29405.031124] SLOW spr round 48 (radius: 20)
[01:30:35 -29405.031123] SLOW spr round 49 (radius: 25)
[01:32:54 -29405.031123] Model parameter optimization (eps = 0.100000)

[01:33:00] ML tree search #1, logLikelihood: -29403.635231

[01:33:00 -77298.673803] Initial branch length optimization
[01:33:01 -63943.128066] Model parameter optimization (eps = 10.000000)
[01:33:16 -63789.143067] AUTODETECT spr round 1 (radius: 5)
[01:34:29 -49721.263772] AUTODETECT spr round 2 (radius: 10)
[01:35:50 -41013.720774] AUTODETECT spr round 3 (radius: 15)
[01:37:24 -37196.870191] AUTODETECT spr round 4 (radius: 20)
[01:39:03 -34438.170332] AUTODETECT spr round 5 (radius: 25)
[01:40:52 -32856.178150] SPR radius for FAST iterations: 25 (autodetect)
[01:40:52 -32856.178150] Model parameter optimization (eps = 3.000000)
[01:41:01 -32753.974500] FAST spr round 1 (radius: 25)
[01:43:02 -29857.038884] FAST spr round 2 (radius: 25)
[01:44:32 -29615.139270] FAST spr round 3 (radius: 25)
[01:45:51 -29555.236973] FAST spr round 4 (radius: 25)
[01:47:03 -29551.476517] FAST spr round 5 (radius: 25)
[01:48:12 -29550.215352] FAST spr round 6 (radius: 25)
[01:49:19 -29550.214256] Model parameter optimization (eps = 1.000000)
[01:49:26 -29543.515416] SLOW spr round 1 (radius: 5)
[01:50:43 -29534.982968] SLOW spr round 2 (radius: 5)
[01:52:00 -29533.223637] SLOW spr round 3 (radius: 5)
[01:53:15 -29533.223036] SLOW spr round 4 (radius: 10)
[01:54:33 -29531.487174] SLOW spr round 5 (radius: 5)
[01:56:03 -29529.031799] SLOW spr round 6 (radius: 5)
[01:57:24 -29529.031720] SLOW spr round 7 (radius: 10)
[01:58:42 -29527.663632] SLOW spr round 8 (radius: 5)
[02:00:09 -29527.660224] SLOW spr round 9 (radius: 10)
[02:01:31 -29527.659136] SLOW spr round 10 (radius: 15)
[02:03:13 -29524.589043] SLOW spr round 11 (radius: 5)
[02:04:44 -29523.960434] SLOW spr round 12 (radius: 5)
[02:06:07 -29523.960425] SLOW spr round 13 (radius: 10)
[02:07:27 -29522.987310] SLOW spr round 14 (radius: 5)
[02:08:54 -29522.479407] SLOW spr round 15 (radius: 5)
[02:10:15 -29521.829012] SLOW spr round 16 (radius: 5)
[02:11:32 -29521.828875] SLOW spr round 17 (radius: 10)
[02:12:50 -29521.828872] SLOW spr round 18 (radius: 15)
[02:14:35 -29521.828872] SLOW spr round 19 (radius: 20)
[02:16:40 -29513.093039] SLOW spr round 20 (radius: 5)
[02:18:14 -29504.344636] SLOW spr round 21 (radius: 5)
[02:19:40 -29501.876773] SLOW spr round 22 (radius: 5)
[02:20:59 -29501.876705] SLOW spr round 23 (radius: 10)
[02:22:17 -29499.386742] SLOW spr round 24 (radius: 5)
[02:23:45 -29499.357333] SLOW spr round 25 (radius: 10)
[02:25:07 -29499.357228] SLOW spr round 26 (radius: 15)
[02:26:47 -29499.357223] SLOW spr round 27 (radius: 20)
[02:28:51 -29499.357222] SLOW spr round 28 (radius: 25)
[02:31:07 -29495.777962] SLOW spr round 29 (radius: 5)
[02:32:40 -29493.992886] SLOW spr round 30 (radius: 5)
[02:34:04 -29493.992640] SLOW spr round 31 (radius: 10)
[02:35:24 -29493.992630] SLOW spr round 32 (radius: 15)
[02:37:05 -29493.992629] SLOW spr round 33 (radius: 20)
[02:39:09 -29493.992628] SLOW spr round 34 (radius: 25)
[02:41:26 -29493.489716] SLOW spr round 35 (radius: 5)
[02:42:58 -29493.489662] SLOW spr round 36 (radius: 10)
[02:44:26 -29493.489662] SLOW spr round 37 (radius: 15)
[02:46:05 -29493.489662] SLOW spr round 38 (radius: 20)
[02:48:09 -29493.489662] SLOW spr round 39 (radius: 25)
[02:50:26 -29493.118266] SLOW spr round 40 (radius: 5)
[02:51:58 -29493.116346] SLOW spr round 41 (radius: 10)
[02:53:26 -29493.115942] SLOW spr round 42 (radius: 15)
[02:55:06 -29493.115855] SLOW spr round 43 (radius: 20)
[02:57:13 -29493.115837] SLOW spr round 44 (radius: 25)
[02:59:31 -29493.074053] Model parameter optimization (eps = 0.100000)

[02:59:36] ML tree search #2, logLikelihood: -29492.984048

[02:59:36 -77066.734621] Initial branch length optimization
[02:59:37 -63608.938075] Model parameter optimization (eps = 10.000000)
[02:59:53 -63476.133272] AUTODETECT spr round 1 (radius: 5)
[03:01:06 -50102.323710] AUTODETECT spr round 2 (radius: 10)
[03:02:30 -40694.194960] AUTODETECT spr round 3 (radius: 15)
[03:04:01 -36513.856624] AUTODETECT spr round 4 (radius: 20)
[03:05:37 -34544.144268] AUTODETECT spr round 5 (radius: 25)
[03:07:24 -33954.747762] SPR radius for FAST iterations: 25 (autodetect)
[03:07:24 -33954.747762] Model parameter optimization (eps = 3.000000)
[03:07:34 -33851.425122] FAST spr round 1 (radius: 25)
[03:09:32 -29995.818232] FAST spr round 2 (radius: 25)
[03:11:00 -29655.637085] FAST spr round 3 (radius: 25)
[03:12:18 -29609.200758] FAST spr round 4 (radius: 25)
[03:13:32 -29601.166244] FAST spr round 5 (radius: 25)
[03:14:41 -29593.301262] FAST spr round 6 (radius: 25)
[03:15:47 -29593.301029] Model parameter optimization (eps = 1.000000)
[03:15:55 -29585.823866] SLOW spr round 1 (radius: 5)
[03:17:12 -29573.520266] SLOW spr round 2 (radius: 5)
[03:18:29 -29569.853227] SLOW spr round 3 (radius: 5)
[03:19:46 -29567.781022] SLOW spr round 4 (radius: 5)
[03:21:01 -29566.962951] SLOW spr round 5 (radius: 5)
[03:22:16 -29566.962949] SLOW spr round 6 (radius: 10)
[03:23:32 -29565.131384] SLOW spr round 7 (radius: 5)
[03:25:03 -29557.439460] SLOW spr round 8 (radius: 5)
[03:26:26 -29557.312814] SLOW spr round 9 (radius: 5)
[03:27:43 -29557.312663] SLOW spr round 10 (radius: 10)
[03:29:01 -29557.312630] SLOW spr round 11 (radius: 15)
[03:30:46 -29555.153883] SLOW spr round 12 (radius: 5)
[03:32:15 -29555.152151] SLOW spr round 13 (radius: 10)
[03:33:41 -29550.744401] SLOW spr round 14 (radius: 5)
[03:35:08 -29550.141020] SLOW spr round 15 (radius: 5)
[03:36:29 -29550.140822] SLOW spr round 16 (radius: 10)
[03:37:47 -29548.664024] SLOW spr round 17 (radius: 5)
[03:39:15 -29547.658423] SLOW spr round 18 (radius: 5)
[03:40:36 -29547.658361] SLOW spr round 19 (radius: 10)
[03:41:54 -29547.658358] SLOW spr round 20 (radius: 15)
[03:43:37 -29547.658356] SLOW spr round 21 (radius: 20)
[03:45:45 -29537.979182] SLOW spr round 22 (radius: 5)
[03:47:17 -29537.304567] SLOW spr round 23 (radius: 5)
[03:48:41 -29535.353730] SLOW spr round 24 (radius: 5)
[03:50:00 -29535.353707] SLOW spr round 25 (radius: 10)
[03:51:17 -29535.353704] SLOW spr round 26 (radius: 15)
[03:53:01 -29535.353701] SLOW spr round 27 (radius: 20)
[03:55:05 -29535.353699] SLOW spr round 28 (radius: 25)
[03:57:29 -29519.843473] SLOW spr round 29 (radius: 5)
[03:59:04 -29499.270334] SLOW spr round 30 (radius: 5)
[04:00:28 -29499.269729] SLOW spr round 31 (radius: 10)
[04:01:48 -29498.549825] SLOW spr round 32 (radius: 5)
[04:03:14 -29498.549782] SLOW spr round 33 (radius: 10)
[04:04:35 -29498.549780] SLOW spr round 34 (radius: 15)
[04:06:14 -29498.549778] SLOW spr round 35 (radius: 20)
[04:08:26 -29497.632877] SLOW spr round 36 (radius: 5)
[04:09:59 -29497.568481] SLOW spr round 37 (radius: 10)
[04:11:26 -29497.568447] SLOW spr round 38 (radius: 15)
[04:13:07 -29497.568440] SLOW spr round 39 (radius: 20)
[04:15:14 -29497.568436] SLOW spr round 40 (radius: 25)
[04:17:38 -29497.568435] Model parameter optimization (eps = 0.100000)

[04:17:43] ML tree search #3, logLikelihood: -29497.403924

[04:17:43 -77191.485372] Initial branch length optimization
[04:17:44 -63859.074396] Model parameter optimization (eps = 10.000000)
[04:18:04 -63700.834013] AUTODETECT spr round 1 (radius: 5)
[04:19:18 -49780.709250] AUTODETECT spr round 2 (radius: 10)
[04:20:41 -39561.947761] AUTODETECT spr round 3 (radius: 15)
[04:22:09 -35245.370384] AUTODETECT spr round 4 (radius: 20)
[04:23:46 -33984.835179] AUTODETECT spr round 5 (radius: 25)
[04:25:27 -33422.911648] SPR radius for FAST iterations: 25 (autodetect)
[04:25:27 -33422.911648] Model parameter optimization (eps = 3.000000)
[04:25:39 -33321.227412] FAST spr round 1 (radius: 25)
[04:27:36 -30378.172674] FAST spr round 2 (radius: 25)
[04:29:06 -30006.857942] FAST spr round 3 (radius: 25)
[04:30:25 -29976.560664] FAST spr round 4 (radius: 25)
[04:31:39 -29969.910446] FAST spr round 5 (radius: 25)
[04:32:48 -29969.246279] FAST spr round 6 (radius: 25)
[04:33:56 -29967.935720] FAST spr round 7 (radius: 25)
[04:35:03 -29967.582700] FAST spr round 8 (radius: 25)
[04:36:09 -29967.579395] Model parameter optimization (eps = 1.000000)
[04:36:18 -29961.214676] SLOW spr round 1 (radius: 5)
[04:37:35 -29952.483426] SLOW spr round 2 (radius: 5)
[04:38:52 -29948.518024] SLOW spr round 3 (radius: 5)
[04:40:08 -29948.517901] SLOW spr round 4 (radius: 10)
[04:41:26 -29945.340018] SLOW spr round 5 (radius: 5)
[04:42:56 -29945.161726] SLOW spr round 6 (radius: 5)
[04:44:19 -29945.161605] SLOW spr round 7 (radius: 10)
[04:45:40 -29942.967662] SLOW spr round 8 (radius: 5)
[04:47:10 -29940.984782] SLOW spr round 9 (radius: 5)
[04:48:33 -29940.194698] SLOW spr round 10 (radius: 5)
[04:49:52 -29939.188929] SLOW spr round 11 (radius: 5)
[04:51:09 -29939.188848] SLOW spr round 12 (radius: 10)
[04:52:26 -29939.188814] SLOW spr round 13 (radius: 15)
[04:54:16 -29935.431265] SLOW spr round 14 (radius: 5)
[04:55:50 -29930.512500] SLOW spr round 15 (radius: 5)
[04:57:14 -29929.871167] SLOW spr round 16 (radius: 5)
[04:58:35 -29928.752744] SLOW spr round 17 (radius: 5)
[04:59:53 -29928.734555] SLOW spr round 18 (radius: 10)
[05:01:11 -29926.442553] SLOW spr round 19 (radius: 5)
[05:02:40 -29926.442546] SLOW spr round 20 (radius: 10)
[05:04:04 -29923.971880] SLOW spr round 21 (radius: 5)
[05:05:32 -29923.811343] SLOW spr round 22 (radius: 5)
[05:06:55 -29923.762953] SLOW spr round 23 (radius: 10)
[05:08:14 -29923.762917] SLOW spr round 24 (radius: 15)
[05:09:59 -29922.396901] SLOW spr round 25 (radius: 5)
[05:11:31 -29920.549697] SLOW spr round 26 (radius: 5)
[05:12:55 -29920.548623] SLOW spr round 27 (radius: 10)
[05:14:14 -29920.548621] SLOW spr round 28 (radius: 15)
[05:15:58 -29920.548620] SLOW spr round 29 (radius: 20)
[05:18:03 -29919.703573] SLOW spr round 30 (radius: 5)
[05:19:36 -29918.857807] SLOW spr round 31 (radius: 5)
[05:21:01 -29918.857804] SLOW spr round 32 (radius: 10)
[05:22:21 -29918.857803] SLOW spr round 33 (radius: 15)
[05:24:04 -29918.857802] SLOW spr round 34 (radius: 20)
[05:26:10 -29918.857802] SLOW spr round 35 (radius: 25)
[05:28:32 -29912.383176] SLOW spr round 36 (radius: 5)
[05:30:08 -29897.045655] SLOW spr round 37 (radius: 5)
[05:31:33 -29897.043775] SLOW spr round 38 (radius: 10)
[05:32:53 -29897.043484] SLOW spr round 39 (radius: 15)
[05:34:35 -29897.043430] SLOW spr round 40 (radius: 20)
[05:36:41 -29896.787767] SLOW spr round 41 (radius: 5)
[05:38:13 -29895.996652] SLOW spr round 42 (radius: 5)
[05:39:37 -29895.996206] SLOW spr round 43 (radius: 10)
[05:40:58 -29895.996111] SLOW spr round 44 (radius: 15)
[05:42:41 -29895.996076] SLOW spr round 45 (radius: 20)
[05:44:46 -29895.665967] SLOW spr round 46 (radius: 5)
[05:46:19 -29895.665617] SLOW spr round 47 (radius: 10)
[05:47:45 -29895.665612] SLOW spr round 48 (radius: 15)
[05:49:26 -29895.665610] SLOW spr round 49 (radius: 20)
[05:51:32 -29895.665610] SLOW spr round 50 (radius: 25)
[05:53:52 -29895.481290] SLOW spr round 51 (radius: 5)
[05:55:25 -29894.347823] SLOW spr round 52 (radius: 5)
[05:56:51 -29888.641335] SLOW spr round 53 (radius: 5)
[05:58:11 -29888.640875] SLOW spr round 54 (radius: 10)
[05:59:31 -29815.889188] SLOW spr round 55 (radius: 5)
[06:01:03 -29775.093444] SLOW spr round 56 (radius: 5)
[06:02:27 -29763.093339] SLOW spr round 57 (radius: 5)
[06:03:46 -29761.630552] SLOW spr round 58 (radius: 5)
[06:05:03 -29761.630386] SLOW spr round 59 (radius: 10)
[06:06:22 -29761.193109] SLOW spr round 60 (radius: 5)
[06:07:50 -29761.193063] SLOW spr round 61 (radius: 10)
[06:09:13 -29760.308079] SLOW spr round 62 (radius: 5)
[06:10:42 -29758.629248] SLOW spr round 63 (radius: 5)
[06:12:04 -29758.628990] SLOW spr round 64 (radius: 10)
[06:13:23 -29758.628965] SLOW spr round 65 (radius: 15)
[06:15:09 -29758.628961] SLOW spr round 66 (radius: 20)
[06:17:14 -29758.628960] SLOW spr round 67 (radius: 25)
[06:19:35 -29757.783512] SLOW spr round 68 (radius: 5)
[06:21:07 -29757.743952] SLOW spr round 69 (radius: 10)
[06:22:36 -29757.743933] SLOW spr round 70 (radius: 15)
[06:24:16 -29757.743932] SLOW spr round 71 (radius: 20)
[06:26:24 -29757.743931] SLOW spr round 72 (radius: 25)
[06:28:43 -29757.743931] Model parameter optimization (eps = 0.100000)

[06:28:51] ML tree search #4, logLikelihood: -29757.597009

[06:28:51 -76982.541413] Initial branch length optimization
[06:28:53 -63231.357956] Model parameter optimization (eps = 10.000000)
[06:29:06 -63073.927266] AUTODETECT spr round 1 (radius: 5)
[06:30:21 -49582.129815] AUTODETECT spr round 2 (radius: 10)
[06:31:42 -40714.859095] AUTODETECT spr round 3 (radius: 15)
[06:33:16 -36206.846149] AUTODETECT spr round 4 (radius: 20)
[06:34:49 -34275.051494] AUTODETECT spr round 5 (radius: 25)
[06:36:36 -33688.993507] SPR radius for FAST iterations: 25 (autodetect)
[06:36:36 -33688.993507] Model parameter optimization (eps = 3.000000)
[06:36:45 -33575.996812] FAST spr round 1 (radius: 25)
[06:38:31 -31542.033716] FAST spr round 2 (radius: 25)
[06:39:54 -31333.678402] FAST spr round 3 (radius: 25)
[06:41:11 -31254.245817] FAST spr round 4 (radius: 25)
[06:42:23 -31228.968102] FAST spr round 5 (radius: 25)
[06:43:33 -31222.506646] FAST spr round 6 (radius: 25)
[06:44:40 -31222.364446] FAST spr round 7 (radius: 25)
[06:45:46 -31222.364362] Model parameter optimization (eps = 1.000000)
[06:45:53 -31213.808091] SLOW spr round 1 (radius: 5)
[06:47:12 -31200.289800] SLOW spr round 2 (radius: 5)
[06:48:31 -31199.208276] SLOW spr round 3 (radius: 5)
[06:49:47 -31199.208205] SLOW spr round 4 (radius: 10)
[06:51:04 -31197.386563] SLOW spr round 5 (radius: 5)
[06:52:36 -31197.058332] SLOW spr round 6 (radius: 5)
[06:53:59 -31197.058119] SLOW spr round 7 (radius: 10)
[06:55:18 -31194.847520] SLOW spr round 8 (radius: 5)
[06:56:48 -31194.292775] SLOW spr round 9 (radius: 5)
[06:58:11 -31194.292566] SLOW spr round 10 (radius: 10)
[06:59:30 -31193.742153] SLOW spr round 11 (radius: 5)
[07:01:00 -31193.723567] SLOW spr round 12 (radius: 10)
[07:02:23 -31193.723518] SLOW spr round 13 (radius: 15)
[07:04:05 -31190.541052] SLOW spr round 14 (radius: 5)
[07:05:38 -31190.474820] SLOW spr round 15 (radius: 10)
[07:07:03 -31190.473593] SLOW spr round 16 (radius: 15)
[07:08:43 -31190.473547] SLOW spr round 17 (radius: 20)
[07:10:46 -31177.043755] SLOW spr round 18 (radius: 5)
[07:12:21 -31160.295441] SLOW spr round 19 (radius: 5)
[07:13:48 -31159.996555] SLOW spr round 20 (radius: 5)
[07:15:08 -31159.996136] SLOW spr round 21 (radius: 10)
[07:16:27 -31159.532771] SLOW spr round 22 (radius: 5)
[07:17:56 -31159.532767] SLOW spr round 23 (radius: 10)
[07:19:19 -31159.151236] SLOW spr round 24 (radius: 5)
[07:20:47 -31159.151232] SLOW spr round 25 (radius: 10)
[07:22:09 -31159.151229] SLOW spr round 26 (radius: 15)
[07:23:52 -31155.065632] SLOW spr round 27 (radius: 5)
[07:25:26 -31153.897361] SLOW spr round 28 (radius: 5)
[07:26:51 -31153.890869] SLOW spr round 29 (radius: 10)
[07:28:11 -31153.890858] SLOW spr round 30 (radius: 15)
[07:29:56 -31153.890854] SLOW spr round 31 (radius: 20)
[07:31:58 -31153.239521] SLOW spr round 32 (radius: 5)
[07:33:33 -31153.239462] SLOW spr round 33 (radius: 10)
[07:35:01 -31153.239443] SLOW spr round 34 (radius: 15)
[07:36:42 -31153.239422] SLOW spr round 35 (radius: 20)
[07:38:47 -31153.239411] SLOW spr round 36 (radius: 25)
[07:41:10 -31052.231846] SLOW spr round 37 (radius: 5)
[07:42:49 -30914.801013] SLOW spr round 38 (radius: 5)
[07:44:18 -30830.084255] SLOW spr round 39 (radius: 5)
[07:45:41 -30810.258739] SLOW spr round 40 (radius: 5)
[07:47:01 -30808.609300] SLOW spr round 41 (radius: 5)
[07:48:20 -30806.635723] SLOW spr round 42 (radius: 5)
[07:49:37 -30806.635692] SLOW spr round 43 (radius: 10)
[07:51:00 -30511.281684] SLOW spr round 44 (radius: 5)
[07:52:31 -30325.371273] SLOW spr round 45 (radius: 5)
[07:53:56 -30265.990290] SLOW spr round 46 (radius: 5)
[07:55:19 -30201.437916] SLOW spr round 47 (radius: 5)
[07:56:39 -30175.954229] SLOW spr round 48 (radius: 5)
[07:57:55 -30175.953650] SLOW spr round 49 (radius: 10)
[07:59:14 -30169.777007] SLOW spr round 50 (radius: 5)
[08:00:44 -30169.371097] SLOW spr round 51 (radius: 5)
[08:02:06 -30169.370868] SLOW spr round 52 (radius: 10)
[08:03:26 -30166.485114] SLOW spr round 53 (radius: 5)
[08:04:54 -30166.237661] SLOW spr round 54 (radius: 5)
[08:06:16 -30166.237315] SLOW spr round 55 (radius: 10)
[08:07:37 -30165.184679] SLOW spr round 56 (radius: 5)
[08:09:05 -30164.946319] SLOW spr round 57 (radius: 5)
[08:10:27 -30164.946085] SLOW spr round 58 (radius: 10)
[08:11:47 -30164.058895] SLOW spr round 59 (radius: 5)
[08:13:18 -30159.617587] SLOW spr round 60 (radius: 5)
[08:14:42 -30157.367932] SLOW spr round 61 (radius: 5)
[08:16:01 -30157.367660] SLOW spr round 62 (radius: 10)
[08:17:19 -30157.194066] SLOW spr round 63 (radius: 5)
[08:18:48 -30157.191965] SLOW spr round 64 (radius: 10)
[08:20:11 -30157.191854] SLOW spr round 65 (radius: 15)
[08:21:59 -30057.559126] SLOW spr round 66 (radius: 5)
[08:23:32 -29971.951864] SLOW spr round 67 (radius: 5)
[08:24:58 -29969.988048] SLOW spr round 68 (radius: 5)
[08:26:18 -29969.987897] SLOW spr round 69 (radius: 10)
[08:27:36 -29969.987896] SLOW spr round 70 (radius: 15)
[08:29:26 -29969.856657] SLOW spr round 71 (radius: 5)
[08:30:56 -29969.856652] SLOW spr round 72 (radius: 10)
[08:32:22 -29969.856652] SLOW spr round 73 (radius: 15)
[08:34:08 -29969.856652] SLOW spr round 74 (radius: 20)
[08:36:28 -29788.905337] SLOW spr round 75 (radius: 5)
[08:38:02 -29699.273367] SLOW spr round 76 (radius: 5)
[08:39:29 -29688.003383] SLOW spr round 77 (radius: 5)
[08:40:52 -29680.191432] SLOW spr round 78 (radius: 5)
[08:42:10 -29680.191427] SLOW spr round 79 (radius: 10)
[08:43:30 -29660.181695] SLOW spr round 80 (radius: 5)
[08:45:01 -29653.800309] SLOW spr round 81 (radius: 5)
[08:46:23 -29653.798794] SLOW spr round 82 (radius: 10)
[08:47:43 -29652.005890] SLOW spr round 83 (radius: 5)
[08:49:11 -29652.005887] SLOW spr round 84 (radius: 10)
[08:50:35 -29649.597680] SLOW spr round 85 (radius: 5)
[08:52:03 -29649.334414] SLOW spr round 86 (radius: 5)
[08:53:24 -29649.334353] SLOW spr round 87 (radius: 10)
[08:54:46 -29648.770319] SLOW spr round 88 (radius: 5)
[08:56:15 -29648.770308] SLOW spr round 89 (radius: 10)
[08:57:41 -29648.770307] SLOW spr round 90 (radius: 15)
[08:59:35 -29631.249823] SLOW spr round 91 (radius: 5)
[09:01:10 -29629.616821] SLOW spr round 92 (radius: 5)
[09:02:36 -29629.500684] SLOW spr round 93 (radius: 5)
[09:03:58 -29629.499456] SLOW spr round 94 (radius: 10)
[09:05:19 -29621.886476] SLOW spr round 95 (radius: 5)
[09:06:50 -29621.886394] SLOW spr round 96 (radius: 10)
[09:08:16 -29621.886394] SLOW spr round 97 (radius: 15)
[09:10:09 -29618.316601] SLOW spr round 98 (radius: 5)
[09:11:42 -29618.315030] SLOW spr round 99 (radius: 10)
[09:13:12 -29617.982494] SLOW spr round 100 (radius: 5)
[09:14:41 -29617.981349] SLOW spr round 101 (radius: 10)
[09:16:06 -29617.981348] SLOW spr round 102 (radius: 15)
[09:17:58 -29617.281940] SLOW spr round 103 (radius: 5)
[09:19:31 -29617.280027] SLOW spr round 104 (radius: 10)
[09:21:01 -29617.279608] SLOW spr round 105 (radius: 15)
[09:22:51 -29616.206038] SLOW spr round 106 (radius: 5)
[09:24:24 -29614.821476] SLOW spr round 107 (radius: 5)
[09:25:50 -29614.113576] SLOW spr round 108 (radius: 5)
[09:27:10 -29614.113576] SLOW spr round 109 (radius: 10)
[09:28:30 -29614.113576] SLOW spr round 110 (radius: 15)
[09:30:26 -29614.113576] SLOW spr round 111 (radius: 20)
[09:32:40 -29610.175820] SLOW spr round 112 (radius: 5)
[09:34:14 -29609.926160] SLOW spr round 113 (radius: 5)
[09:35:39 -29609.925277] SLOW spr round 114 (radius: 10)
[09:37:01 -29609.925271] SLOW spr round 115 (radius: 15)
[09:38:53 -29599.728429] SLOW spr round 116 (radius: 5)
[09:40:25 -29599.728300] SLOW spr round 117 (radius: 10)
[09:41:53 -29599.728300] SLOW spr round 118 (radius: 15)
[09:43:42 -29599.728300] SLOW spr round 119 (radius: 20)
[09:45:59 -29599.728300] SLOW spr round 120 (radius: 25)
[09:48:26 -29596.074946] SLOW spr round 121 (radius: 5)
[09:50:01 -29551.654622] SLOW spr round 122 (radius: 5)
[09:51:27 -29551.654586] SLOW spr round 123 (radius: 10)
[09:52:49 -29551.654585] SLOW spr round 124 (radius: 15)
[09:54:40 -29551.654585] SLOW spr round 125 (radius: 20)
[09:56:53 -29551.654585] SLOW spr round 126 (radius: 25)
[09:59:18 -29551.654585] Model parameter optimization (eps = 0.100000)

[09:59:23] ML tree search #5, logLikelihood: -29550.732682

[09:59:23 -76753.961240] Initial branch length optimization
[09:59:25 -63835.997498] Model parameter optimization (eps = 10.000000)
[09:59:41 -63684.835725] AUTODETECT spr round 1 (radius: 5)
[10:00:58 -49897.391895] AUTODETECT spr round 2 (radius: 10)
[10:02:24 -40502.577546] AUTODETECT spr round 3 (radius: 15)
[10:03:56 -35679.330428] AUTODETECT spr round 4 (radius: 20)
[10:05:36 -34130.569075] AUTODETECT spr round 5 (radius: 25)
[10:07:26 -33402.342861] SPR radius for FAST iterations: 25 (autodetect)
[10:07:26 -33402.342861] Model parameter optimization (eps = 3.000000)
[10:07:36 -33297.940132] FAST spr round 1 (radius: 25)
[10:09:33 -30402.186820] FAST spr round 2 (radius: 25)
[10:11:06 -29886.155177] FAST spr round 3 (radius: 25)
[10:12:29 -29656.852177] FAST spr round 4 (radius: 25)
[10:13:44 -29621.880715] FAST spr round 5 (radius: 25)
[10:14:56 -29614.271781] FAST spr round 6 (radius: 25)
[10:16:05 -29613.111395] FAST spr round 7 (radius: 25)
[10:17:13 -29612.722714] FAST spr round 8 (radius: 25)
[10:18:21 -29612.722518] Model parameter optimization (eps = 1.000000)
[10:18:29 -29606.752305] SLOW spr round 1 (radius: 5)
[10:19:46 -29596.059777] SLOW spr round 2 (radius: 5)
[10:21:03 -29596.059417] SLOW spr round 3 (radius: 10)
[10:22:22 -29594.654903] SLOW spr round 4 (radius: 5)
[10:23:53 -29593.578749] SLOW spr round 5 (radius: 5)
[10:25:16 -29593.578515] SLOW spr round 6 (radius: 10)
[10:26:37 -29592.743189] SLOW spr round 7 (radius: 5)
[10:28:05 -29592.743188] SLOW spr round 8 (radius: 10)
[10:29:29 -29592.743186] SLOW spr round 9 (radius: 15)
[10:31:17 -29589.314521] SLOW spr round 10 (radius: 5)
[10:32:50 -29589.081784] SLOW spr round 11 (radius: 5)
[10:34:14 -29589.081766] SLOW spr round 12 (radius: 10)
[10:35:36 -29588.457565] SLOW spr round 13 (radius: 5)
[10:37:04 -29588.295957] SLOW spr round 14 (radius: 5)
[10:38:28 -29584.847448] SLOW spr round 15 (radius: 5)
[10:39:48 -29584.004024] SLOW spr round 16 (radius: 5)
[10:41:05 -29584.003943] SLOW spr round 17 (radius: 10)
[10:42:23 -29582.841917] SLOW spr round 18 (radius: 5)
[10:43:55 -29581.231769] SLOW spr round 19 (radius: 5)
[10:45:19 -29581.065664] SLOW spr round 20 (radius: 5)
[10:46:39 -29581.065333] SLOW spr round 21 (radius: 10)
[10:47:58 -29581.065327] SLOW spr round 22 (radius: 15)
[10:49:50 -29580.168627] SLOW spr round 23 (radius: 5)
[10:51:22 -29580.168505] SLOW spr round 24 (radius: 10)
[10:52:50 -29578.325227] SLOW spr round 25 (radius: 5)
[10:54:20 -29575.108001] SLOW spr round 26 (radius: 5)
[10:55:43 -29575.107950] SLOW spr round 27 (radius: 10)
[10:57:04 -29574.785420] SLOW spr round 28 (radius: 5)
[10:58:34 -29573.678083] SLOW spr round 29 (radius: 5)
[10:59:57 -29573.677789] SLOW spr round 30 (radius: 10)
[11:01:18 -29573.677786] SLOW spr round 31 (radius: 15)
[11:03:07 -29573.677784] SLOW spr round 32 (radius: 20)
[11:05:18 -29567.312334] SLOW spr round 33 (radius: 5)
[11:06:52 -29561.120254] SLOW spr round 34 (radius: 5)
[11:08:19 -29560.627909] SLOW spr round 35 (radius: 5)
[11:09:40 -29560.347395] SLOW spr round 36 (radius: 5)
[11:10:59 -29560.346921] SLOW spr round 37 (radius: 10)
[11:12:18 -29556.294726] SLOW spr round 38 (radius: 5)
[11:13:48 -29554.773175] SLOW spr round 39 (radius: 5)
[11:15:12 -29552.994433] SLOW spr round 40 (radius: 5)
[11:16:31 -29552.994385] SLOW spr round 41 (radius: 10)
[11:17:50 -29552.994383] SLOW spr round 42 (radius: 15)
[11:19:41 -29551.910370] SLOW spr round 43 (radius: 5)
[11:21:12 -29551.654780] SLOW spr round 44 (radius: 5)
[11:22:36 -29551.654489] SLOW spr round 45 (radius: 10)
[11:23:55 -29551.654486] SLOW spr round 46 (radius: 15)
[11:25:43 -29551.654484] SLOW spr round 47 (radius: 20)
[11:27:50 -29546.043750] SLOW spr round 48 (radius: 5)
[11:29:25 -29544.689760] SLOW spr round 49 (radius: 5)
[11:30:51 -29543.443388] SLOW spr round 50 (radius: 5)
[11:32:12 -29543.443381] SLOW spr round 51 (radius: 10)
[11:33:32 -29543.443379] SLOW spr round 52 (radius: 15)
[11:35:22 -29543.443378] SLOW spr round 53 (radius: 20)
[11:37:30 -29543.443376] SLOW spr round 54 (radius: 25)
[11:39:53 -29540.565117] SLOW spr round 55 (radius: 5)
[11:41:27 -29540.524039] SLOW spr round 56 (radius: 10)
[11:42:57 -29540.523909] SLOW spr round 57 (radius: 15)
[11:44:42 -29540.523032] SLOW spr round 58 (radius: 20)
[11:46:51 -29540.523032] SLOW spr round 59 (radius: 25)
[11:49:12 -29540.523032] Model parameter optimization (eps = 0.100000)

[11:49:18] ML tree search #6, logLikelihood: -29540.300886

[11:49:18 -76571.978926] Initial branch length optimization
[11:49:20 -63268.893088] Model parameter optimization (eps = 10.000000)
[11:49:35 -63125.865658] AUTODETECT spr round 1 (radius: 5)
[11:50:52 -50032.925725] AUTODETECT spr round 2 (radius: 10)
[11:52:17 -40030.304787] AUTODETECT spr round 3 (radius: 15)
[11:53:49 -35031.897676] AUTODETECT spr round 4 (radius: 20)
[11:55:26 -32914.543898] AUTODETECT spr round 5 (radius: 25)
[11:57:14 -32357.611605] SPR radius for FAST iterations: 25 (autodetect)
[11:57:14 -32357.611605] Model parameter optimization (eps = 3.000000)
[11:57:26 -32258.696745] FAST spr round 1 (radius: 25)
[11:59:17 -29867.051346] FAST spr round 2 (radius: 25)
[12:00:49 -29662.951593] FAST spr round 3 (radius: 25)
[12:02:11 -29614.318811] FAST spr round 4 (radius: 25)
[12:03:27 -29608.576394] FAST spr round 5 (radius: 25)
[12:04:38 -29608.330456] FAST spr round 6 (radius: 25)
[12:05:47 -29608.294500] Model parameter optimization (eps = 1.000000)
[12:05:58 -29603.383219] SLOW spr round 1 (radius: 5)
[12:07:18 -29596.510393] SLOW spr round 2 (radius: 5)
[12:08:39 -29596.480522] SLOW spr round 3 (radius: 10)
[12:10:02 -29591.876129] SLOW spr round 4 (radius: 5)
[12:11:35 -29590.703294] SLOW spr round 5 (radius: 5)
[12:13:00 -29590.703231] SLOW spr round 6 (radius: 10)
[12:14:21 -29590.351559] SLOW spr round 7 (radius: 5)
[12:15:51 -29590.351518] SLOW spr round 8 (radius: 10)
[12:17:16 -29589.423842] SLOW spr round 9 (radius: 5)
[12:18:46 -29589.058590] SLOW spr round 10 (radius: 5)
[12:20:09 -29589.058430] SLOW spr round 11 (radius: 10)
[12:21:31 -29589.058392] SLOW spr round 12 (radius: 15)
[12:23:24 -29582.209543] SLOW spr round 13 (radius: 5)
[12:25:00 -29578.053396] SLOW spr round 14 (radius: 5)
[12:26:26 -29578.051950] SLOW spr round 15 (radius: 10)
[12:27:48 -29578.051929] SLOW spr round 16 (radius: 15)
[12:29:40 -29577.851893] SLOW spr round 17 (radius: 5)
[12:31:13 -29576.190105] SLOW spr round 18 (radius: 5)
[12:32:38 -29576.190101] SLOW spr round 19 (radius: 10)
[12:33:59 -29576.190101] SLOW spr round 20 (radius: 15)
[12:35:49 -29576.190101] SLOW spr round 21 (radius: 20)
[12:38:07 -29571.990175] SLOW spr round 22 (radius: 5)
[12:39:48 -29563.963402] SLOW spr round 23 (radius: 5)
[12:41:18 -29562.430696] SLOW spr round 24 (radius: 5)
[12:42:42 -29562.430574] SLOW spr round 25 (radius: 10)
[12:44:04 -29562.430574] SLOW spr round 26 (radius: 15)
[12:45:58 -29562.192103] SLOW spr round 27 (radius: 5)
[12:47:34 -29562.192034] SLOW spr round 28 (radius: 10)
[12:49:03 -29562.192034] SLOW spr round 29 (radius: 15)
[12:50:53 -29562.192034] SLOW spr round 30 (radius: 20)
[12:53:10 -29562.192034] SLOW spr round 31 (radius: 25)
[12:55:42 -29553.315237] SLOW spr round 32 (radius: 5)
[12:57:20 -29550.270611] SLOW spr round 33 (radius: 5)
[12:58:49 -29550.270355] SLOW spr round 34 (radius: 10)
[13:00:13 -29550.270322] SLOW spr round 35 (radius: 15)
[13:02:04 -29550.270316] SLOW spr round 36 (radius: 20)
[13:04:20 -29550.270316] SLOW spr round 37 (radius: 25)
[13:06:55 -29547.599030] SLOW spr round 38 (radius: 5)
[13:08:33 -29543.601384] SLOW spr round 39 (radius: 5)
[13:10:01 -29543.601138] SLOW spr round 40 (radius: 10)
[13:11:25 -29541.930762] SLOW spr round 41 (radius: 5)
[13:12:58 -29536.293758] SLOW spr round 42 (radius: 5)
[13:14:24 -29534.211125] SLOW spr round 43 (radius: 5)
[13:15:47 -29534.122083] SLOW spr round 44 (radius: 10)
[13:17:07 -29533.643392] SLOW spr round 45 (radius: 5)
[13:18:37 -29533.643353] SLOW spr round 46 (radius: 10)
[13:20:02 -29533.643351] SLOW spr round 47 (radius: 15)
[13:21:51 -29532.768913] SLOW spr round 48 (radius: 5)
[13:23:24 -29532.768910] SLOW spr round 49 (radius: 10)
[13:24:53 -29532.768910] SLOW spr round 50 (radius: 15)
[13:26:40 -29532.768910] SLOW spr round 51 (radius: 20)
[13:28:57 -29532.768910] SLOW spr round 52 (radius: 25)
[13:31:31 -29532.638878] SLOW spr round 53 (radius: 5)
[13:33:07 -29532.638829] SLOW spr round 54 (radius: 10)
[13:34:40 -29532.638827] SLOW spr round 55 (radius: 15)
[13:36:27 -29532.638827] SLOW spr round 56 (radius: 20)
[13:38:45 -29532.638827] SLOW spr round 57 (radius: 25)
[13:41:17 -29531.945816] SLOW spr round 58 (radius: 5)
[13:42:54 -29531.945816] SLOW spr round 59 (radius: 10)
[13:44:27 -29531.945816] SLOW spr round 60 (radius: 15)
[13:46:15 -29531.945816] SLOW spr round 61 (radius: 20)
[13:48:31 -29531.945816] SLOW spr round 62 (radius: 25)
[13:51:04 -29531.945816] Model parameter optimization (eps = 0.100000)

[13:51:08] ML tree search #7, logLikelihood: -29531.712768

[13:51:08 -77354.869095] Initial branch length optimization
[13:51:10 -63733.990990] Model parameter optimization (eps = 10.000000)
[13:51:27 -63588.356036] AUTODETECT spr round 1 (radius: 5)
[13:52:43 -49759.127024] AUTODETECT spr round 2 (radius: 10)
[13:54:07 -40413.177632] AUTODETECT spr round 3 (radius: 15)
[13:55:47 -36080.463236] AUTODETECT spr round 4 (radius: 20)
[13:57:31 -34298.494178] AUTODETECT spr round 5 (radius: 25)
[13:59:18 -33302.975063] SPR radius for FAST iterations: 25 (autodetect)
[13:59:18 -33302.975063] Model parameter optimization (eps = 3.000000)
[13:59:32 -33183.410845] FAST spr round 1 (radius: 25)
[14:01:34 -30202.172436] FAST spr round 2 (radius: 25)
[14:03:07 -29725.423490] FAST spr round 3 (radius: 25)
[14:04:28 -29659.355527] FAST spr round 4 (radius: 25)
[14:05:44 -29644.714061] FAST spr round 5 (radius: 25)
[14:06:55 -29644.455308] FAST spr round 6 (radius: 25)
[14:08:06 -29638.682254] FAST spr round 7 (radius: 25)
[14:09:15 -29638.445849] FAST spr round 8 (radius: 25)
[14:10:24 -29638.445767] Model parameter optimization (eps = 1.000000)
[14:10:30 -29634.215982] SLOW spr round 1 (radius: 5)
[14:11:48 -29622.856532] SLOW spr round 2 (radius: 5)
[14:13:08 -29620.098194] SLOW spr round 3 (radius: 5)
[14:14:25 -29620.075074] SLOW spr round 4 (radius: 10)
[14:15:44 -29619.280907] SLOW spr round 5 (radius: 5)
[14:17:15 -29618.357525] SLOW spr round 6 (radius: 5)
[14:18:38 -29618.357489] SLOW spr round 7 (radius: 10)
[14:20:00 -29615.100116] SLOW spr round 8 (radius: 5)
[14:21:32 -29612.941329] SLOW spr round 9 (radius: 5)
[14:22:56 -29612.940904] SLOW spr round 10 (radius: 10)
[14:24:17 -29612.940893] SLOW spr round 11 (radius: 15)
[14:26:10 -29610.591629] SLOW spr round 12 (radius: 5)
[14:27:44 -29610.591539] SLOW spr round 13 (radius: 10)
[14:29:12 -29609.828195] SLOW spr round 14 (radius: 5)
[14:30:42 -29609.826550] SLOW spr round 15 (radius: 10)
[14:32:06 -29609.826534] SLOW spr round 16 (radius: 15)
[14:33:56 -29609.826531] SLOW spr round 17 (radius: 20)
[14:36:19 -29607.190200] SLOW spr round 18 (radius: 5)
[14:37:54 -29607.189756] SLOW spr round 19 (radius: 10)
[14:39:25 -29607.189715] SLOW spr round 20 (radius: 15)
[14:41:13 -29607.189680] SLOW spr round 21 (radius: 20)
[14:43:34 -29607.127080] SLOW spr round 22 (radius: 25)
[14:46:10 -29600.948681] SLOW spr round 23 (radius: 5)
[14:47:47 -29592.868870] SLOW spr round 24 (radius: 5)
[14:49:14 -29592.867561] SLOW spr round 25 (radius: 10)
[14:50:37 -29592.354419] SLOW spr round 26 (radius: 5)
[14:52:09 -29584.759574] SLOW spr round 27 (radius: 5)
[14:53:32 -29584.759551] SLOW spr round 28 (radius: 10)
[14:54:53 -29584.759544] SLOW spr round 29 (radius: 15)
[14:56:44 -29584.710398] SLOW spr round 30 (radius: 20)
[14:59:03 -29584.710389] SLOW spr round 31 (radius: 25)
[15:01:37 -29584.710382] Model parameter optimization (eps = 0.100000)

[15:01:41] ML tree search #8, logLikelihood: -29584.690345

[15:01:41 -77220.301534] Initial branch length optimization
[15:01:42 -63751.125563] Model parameter optimization (eps = 10.000000)
[15:02:01 -63563.539376] AUTODETECT spr round 1 (radius: 5)
[15:03:16 -49813.285044] AUTODETECT spr round 2 (radius: 10)
[15:04:39 -40877.616511] AUTODETECT spr round 3 (radius: 15)
[15:06:12 -35297.339042] AUTODETECT spr round 4 (radius: 20)
[15:07:46 -33763.336110] AUTODETECT spr round 5 (radius: 25)
[15:09:30 -33231.099875] SPR radius for FAST iterations: 25 (autodetect)
[15:09:30 -33231.099875] Model parameter optimization (eps = 3.000000)
[15:09:40 -33122.446439] FAST spr round 1 (radius: 25)
[15:11:32 -30243.608125] FAST spr round 2 (radius: 25)
[15:13:01 -29807.850135] FAST spr round 3 (radius: 25)
[15:14:20 -29620.757721] FAST spr round 4 (radius: 25)
[15:15:33 -29604.679287] FAST spr round 5 (radius: 25)
[15:16:43 -29603.410872] FAST spr round 6 (radius: 25)
[15:17:51 -29603.410267] Model parameter optimization (eps = 1.000000)
[15:18:04 -29597.665948] SLOW spr round 1 (radius: 5)
[15:19:23 -29588.030848] SLOW spr round 2 (radius: 5)
[15:20:42 -29582.811898] SLOW spr round 3 (radius: 5)
[15:21:59 -29582.554349] SLOW spr round 4 (radius: 5)
[15:23:16 -29582.554229] SLOW spr round 5 (radius: 10)
[15:24:35 -29582.246002] SLOW spr round 6 (radius: 5)
[15:26:06 -29581.419033] SLOW spr round 7 (radius: 5)
[15:27:29 -29581.419001] SLOW spr round 8 (radius: 10)
[15:28:49 -29579.222141] SLOW spr round 9 (radius: 5)
[15:30:19 -29579.222122] SLOW spr round 10 (radius: 10)
[15:31:43 -29578.856457] SLOW spr round 11 (radius: 5)
[15:33:12 -29577.903831] SLOW spr round 12 (radius: 5)
[15:34:35 -29577.903578] SLOW spr round 13 (radius: 10)
[15:35:55 -29577.903554] SLOW spr round 14 (radius: 15)
[15:37:41 -29577.028353] SLOW spr round 15 (radius: 5)
[15:39:14 -29577.027925] SLOW spr round 16 (radius: 10)
[15:40:39 -29577.027899] SLOW spr round 17 (radius: 15)
[15:42:22 -29577.027879] SLOW spr round 18 (radius: 20)
[15:44:28 -29574.451320] SLOW spr round 19 (radius: 5)
[15:46:01 -29574.451267] SLOW spr round 20 (radius: 10)
[15:47:28 -29574.451247] SLOW spr round 21 (radius: 15)
[15:49:09 -29574.451226] SLOW spr round 22 (radius: 20)
[15:51:16 -29574.089728] SLOW spr round 23 (radius: 5)
[15:52:52 -29562.648826] SLOW spr round 24 (radius: 5)
[15:54:19 -29562.644897] SLOW spr round 25 (radius: 10)
[15:55:39 -29562.644206] SLOW spr round 26 (radius: 15)
[15:57:22 -29562.643946] SLOW spr round 27 (radius: 20)
[15:59:26 -29562.643842] SLOW spr round 28 (radius: 25)
[16:01:47 -29556.654432] SLOW spr round 29 (radius: 5)
[16:03:21 -29556.654296] SLOW spr round 30 (radius: 10)
[16:04:49 -29556.654271] SLOW spr round 31 (radius: 15)
[16:06:30 -29556.654247] SLOW spr round 32 (radius: 20)
[16:08:36 -29554.487037] SLOW spr round 33 (radius: 5)
[16:10:10 -29551.390536] SLOW spr round 34 (radius: 5)
[16:11:35 -29551.390307] SLOW spr round 35 (radius: 10)
[16:12:55 -29551.390299] SLOW spr round 36 (radius: 15)
[16:14:37 -29551.390299] SLOW spr round 37 (radius: 20)
[16:16:42 -29551.390299] SLOW spr round 38 (radius: 25)
[16:19:01 -29548.693719] SLOW spr round 39 (radius: 5)
[16:20:36 -29547.640295] SLOW spr round 40 (radius: 5)
[16:22:03 -29547.639450] SLOW spr round 41 (radius: 10)
[16:23:24 -29547.639413] SLOW spr round 42 (radius: 15)
[16:25:08 -29547.639411] SLOW spr round 43 (radius: 20)
[16:27:13 -29547.639410] SLOW spr round 44 (radius: 25)
[16:29:32 -29547.297971] SLOW spr round 45 (radius: 5)
[16:31:09 -29545.670753] SLOW spr round 46 (radius: 5)
[16:32:37 -29544.261204] SLOW spr round 47 (radius: 5)
[16:33:58 -29544.261160] SLOW spr round 48 (radius: 10)
[16:35:18 -29544.261160] SLOW spr round 49 (radius: 15)
[16:37:04 -29544.261160] SLOW spr round 50 (radius: 20)
[16:39:09 -29544.261160] SLOW spr round 51 (radius: 25)
[16:41:29 -29544.261160] Model parameter optimization (eps = 0.100000)

[16:41:32] ML tree search #9, logLikelihood: -29544.180265

[16:41:32 -77650.614642] Initial branch length optimization
[16:41:34 -63989.199105] Model parameter optimization (eps = 10.000000)
[16:41:52 -63820.098173] AUTODETECT spr round 1 (radius: 5)
[16:43:08 -49988.952376] AUTODETECT spr round 2 (radius: 10)
[16:44:33 -40613.405527] AUTODETECT spr round 3 (radius: 15)
[16:46:06 -36634.005767] AUTODETECT spr round 4 (radius: 20)
[16:47:44 -35657.310472] AUTODETECT spr round 5 (radius: 25)
[16:49:37 -33917.468985] SPR radius for FAST iterations: 25 (autodetect)
[16:49:37 -33917.468985] Model parameter optimization (eps = 3.000000)
[16:49:47 -33790.563880] FAST spr round 1 (radius: 25)
[16:51:40 -30365.445921] FAST spr round 2 (radius: 25)
[16:53:11 -29783.522122] FAST spr round 3 (radius: 25)
[16:54:28 -29680.791938] FAST spr round 4 (radius: 25)
[16:55:42 -29662.146890] FAST spr round 5 (radius: 25)
[16:56:51 -29661.020577] FAST spr round 6 (radius: 25)
[16:57:58 -29661.019904] Model parameter optimization (eps = 1.000000)
[16:58:05 -29655.712430] SLOW spr round 1 (radius: 5)
[16:59:23 -29644.813067] SLOW spr round 2 (radius: 5)
[17:00:41 -29642.546988] SLOW spr round 3 (radius: 5)
[17:01:58 -29641.420772] SLOW spr round 4 (radius: 5)
[17:03:15 -29641.327043] SLOW spr round 5 (radius: 10)
[17:04:34 -29639.443815] SLOW spr round 6 (radius: 5)
[17:06:05 -29637.094115] SLOW spr round 7 (radius: 5)
[17:07:28 -29637.094104] SLOW spr round 8 (radius: 10)
[17:08:50 -29632.900758] SLOW spr round 9 (radius: 5)
[17:10:23 -29630.700298] SLOW spr round 10 (radius: 5)
[17:11:47 -29629.647825] SLOW spr round 11 (radius: 5)
[17:13:08 -29629.647102] SLOW spr round 12 (radius: 10)
[17:14:27 -29629.646894] SLOW spr round 13 (radius: 15)
[17:16:18 -29624.054347] SLOW spr round 14 (radius: 5)
[17:17:53 -29621.034273] SLOW spr round 15 (radius: 5)
[17:19:18 -29621.034135] SLOW spr round 16 (radius: 10)
[17:20:39 -29621.034124] SLOW spr round 17 (radius: 15)
[17:22:25 -29619.088256] SLOW spr round 18 (radius: 5)
[17:23:57 -29619.049035] SLOW spr round 19 (radius: 10)
[17:25:23 -29619.048716] SLOW spr round 20 (radius: 15)
[17:27:06 -29619.048709] SLOW spr round 21 (radius: 20)
[17:29:11 -29557.080692] SLOW spr round 22 (radius: 5)
[17:30:46 -29555.316380] SLOW spr round 23 (radius: 5)
[17:32:11 -29555.316324] SLOW spr round 24 (radius: 10)
[17:33:32 -29553.466255] SLOW spr round 25 (radius: 5)
[17:35:01 -29553.466204] SLOW spr round 26 (radius: 10)
[17:36:23 -29553.466201] SLOW spr round 27 (radius: 15)
[17:38:05 -29553.466200] SLOW spr round 28 (radius: 20)
[17:40:07 -29553.466198] SLOW spr round 29 (radius: 25)
[17:42:24 -29548.990060] SLOW spr round 30 (radius: 5)
[17:43:59 -29548.371980] SLOW spr round 31 (radius: 5)
[17:45:25 -29548.371948] SLOW spr round 32 (radius: 10)
[17:46:47 -29548.371946] SLOW spr round 33 (radius: 15)
[17:48:31 -29548.252393] SLOW spr round 34 (radius: 5)
[17:50:05 -29547.249293] SLOW spr round 35 (radius: 5)
[17:51:31 -29546.919226] SLOW spr round 36 (radius: 5)
[17:52:52 -29546.919067] SLOW spr round 37 (radius: 10)
[17:54:12 -29546.919064] SLOW spr round 38 (radius: 15)
[17:55:59 -29546.919062] SLOW spr round 39 (radius: 20)
[17:58:01 -29546.842350] SLOW spr round 40 (radius: 25)
[18:00:20 -29546.841865] Model parameter optimization (eps = 0.100000)

[18:00:24] ML tree search #10, logLikelihood: -29546.681079

[18:00:24 -77474.682252] Initial branch length optimization
[18:00:25 -63589.909924] Model parameter optimization (eps = 10.000000)
[18:00:43 -63435.014225] AUTODETECT spr round 1 (radius: 5)
[18:02:01 -49932.750319] AUTODETECT spr round 2 (radius: 10)
[18:03:27 -39699.716634] AUTODETECT spr round 3 (radius: 15)
[18:05:00 -36280.471046] AUTODETECT spr round 4 (radius: 20)
[18:06:42 -34056.699239] AUTODETECT spr round 5 (radius: 25)
[18:08:30 -32889.816239] SPR radius for FAST iterations: 25 (autodetect)
[18:08:30 -32889.816239] Model parameter optimization (eps = 3.000000)
[18:08:45 -32762.167068] FAST spr round 1 (radius: 25)
[18:10:41 -30311.017919] FAST spr round 2 (radius: 25)
[18:12:11 -29920.741815] FAST spr round 3 (radius: 25)
[18:13:31 -29670.997178] FAST spr round 4 (radius: 25)
[18:14:46 -29630.398673] FAST spr round 5 (radius: 25)
[18:15:58 -29621.154312] FAST spr round 6 (radius: 25)
[18:17:08 -29618.962998] FAST spr round 7 (radius: 25)
[18:18:16 -29618.951268] Model parameter optimization (eps = 1.000000)
[18:18:23 -29615.051586] SLOW spr round 1 (radius: 5)
[18:19:42 -29610.680651] SLOW spr round 2 (radius: 5)
[18:21:02 -29606.779419] SLOW spr round 3 (radius: 5)
[18:22:21 -29606.570313] SLOW spr round 4 (radius: 5)
[18:23:40 -29606.568007] SLOW spr round 5 (radius: 10)
[18:25:03 -29597.137459] SLOW spr round 6 (radius: 5)
[18:26:35 -29592.242479] SLOW spr round 7 (radius: 5)
[18:28:01 -29591.338538] SLOW spr round 8 (radius: 5)
[18:29:23 -29591.337427] SLOW spr round 9 (radius: 10)
[18:30:44 -29591.337385] SLOW spr round 10 (radius: 15)
[18:32:33 -29578.663975] SLOW spr round 11 (radius: 5)
[18:34:06 -29575.211664] SLOW spr round 12 (radius: 5)
[18:35:33 -29573.318851] SLOW spr round 13 (radius: 5)
[18:36:54 -29573.317335] SLOW spr round 14 (radius: 10)
[18:38:14 -29569.223627] SLOW spr round 15 (radius: 5)
[18:39:46 -29566.545910] SLOW spr round 16 (radius: 5)
[18:41:10 -29565.978509] SLOW spr round 17 (radius: 5)
[18:42:31 -29565.978385] SLOW spr round 18 (radius: 10)
[18:43:52 -29565.602340] SLOW spr round 19 (radius: 5)
[18:45:23 -29565.602319] SLOW spr round 20 (radius: 10)
[18:46:49 -29565.602319] SLOW spr round 21 (radius: 15)
[18:48:34 -29565.602319] SLOW spr round 22 (radius: 20)
[18:50:41 -29558.318649] SLOW spr round 23 (radius: 5)
[18:52:19 -29548.555100] SLOW spr round 24 (radius: 5)
[18:53:50 -29548.127584] SLOW spr round 25 (radius: 5)
[18:55:20 -29548.127538] SLOW spr round 26 (radius: 10)
[18:56:41 -29548.127537] SLOW spr round 27 (radius: 15)
[18:58:29 -29548.127537] SLOW spr round 28 (radius: 20)
[19:00:33 -29546.994819] SLOW spr round 29 (radius: 5)
[19:02:08 -29543.917308] SLOW spr round 30 (radius: 5)
[19:03:34 -29543.917286] SLOW spr round 31 (radius: 10)
[19:04:57 -29543.917286] SLOW spr round 32 (radius: 15)
[19:06:43 -29543.917286] SLOW spr round 33 (radius: 20)
[19:08:47 -29543.917286] SLOW spr round 34 (radius: 25)
[19:11:03 -29538.805803] SLOW spr round 35 (radius: 5)
[19:12:39 -29535.970769] SLOW spr round 36 (radius: 5)
[19:14:08 -29530.864200] SLOW spr round 37 (radius: 5)
[19:15:30 -29530.864111] SLOW spr round 38 (radius: 10)
[19:16:49 -29530.864106] SLOW spr round 39 (radius: 15)
[19:18:34 -29530.864106] SLOW spr round 40 (radius: 20)
[19:20:35 -29530.864106] SLOW spr round 41 (radius: 25)
[19:22:48 -29530.864106] Model parameter optimization (eps = 0.100000)

[19:22:52] ML tree search #11, logLikelihood: -29530.436835

[19:22:52 -77091.062889] Initial branch length optimization
[19:22:54 -63761.566604] Model parameter optimization (eps = 10.000000)
[19:23:07 -63611.279171] AUTODETECT spr round 1 (radius: 5)
[19:24:24 -49771.373579] AUTODETECT spr round 2 (radius: 10)
[19:25:47 -40733.336202] AUTODETECT spr round 3 (radius: 15)
[19:27:24 -35612.883216] AUTODETECT spr round 4 (radius: 20)
[19:29:10 -33432.824275] AUTODETECT spr round 5 (radius: 25)
[19:30:53 -32592.398518] SPR radius for FAST iterations: 25 (autodetect)
[19:30:53 -32592.398518] Model parameter optimization (eps = 3.000000)
[19:30:57 -32591.962228] FAST spr round 1 (radius: 25)
[19:32:52 -30013.709711] FAST spr round 2 (radius: 25)
[19:34:21 -29853.153764] FAST spr round 3 (radius: 25)
[19:35:39 -29835.160862] FAST spr round 4 (radius: 25)
[19:36:51 -29829.250347] FAST spr round 5 (radius: 25)
[19:38:02 -29753.651042] FAST spr round 6 (radius: 25)
[19:39:12 -29745.237502] FAST spr round 7 (radius: 25)
[19:40:20 -29745.211096] Model parameter optimization (eps = 1.000000)
[19:40:31 -29622.257209] SLOW spr round 1 (radius: 5)
[19:41:51 -29609.640624] SLOW spr round 2 (radius: 5)
[19:43:11 -29609.537685] SLOW spr round 3 (radius: 5)
[19:44:29 -29609.537679] SLOW spr round 4 (radius: 10)
[19:45:49 -29606.414394] SLOW spr round 5 (radius: 5)
[19:47:20 -29605.988813] SLOW spr round 6 (radius: 5)
[19:48:44 -29605.988803] SLOW spr round 7 (radius: 10)
[19:50:05 -29605.880258] SLOW spr round 8 (radius: 5)
[19:51:34 -29605.880239] SLOW spr round 9 (radius: 10)
[19:52:58 -29605.880238] SLOW spr round 10 (radius: 15)
[19:54:46 -29600.235762] SLOW spr round 11 (radius: 5)
[19:56:20 -29597.752070] SLOW spr round 12 (radius: 5)
[19:57:46 -29597.749365] SLOW spr round 13 (radius: 10)
[19:59:07 -29595.905949] SLOW spr round 14 (radius: 5)
[20:00:38 -29595.278534] SLOW spr round 15 (radius: 5)
[20:02:02 -29595.278184] SLOW spr round 16 (radius: 10)
[20:03:22 -29595.278017] SLOW spr round 17 (radius: 15)
[20:05:11 -29593.670040] SLOW spr round 18 (radius: 5)
[20:06:45 -29591.891087] SLOW spr round 19 (radius: 5)
[20:08:10 -29591.832505] SLOW spr round 20 (radius: 10)
[20:09:30 -29591.832495] SLOW spr round 21 (radius: 15)
[20:11:18 -29591.832495] SLOW spr round 22 (radius: 20)
[20:13:25 -29580.409613] SLOW spr round 23 (radius: 5)
[20:14:58 -29579.777095] SLOW spr round 24 (radius: 5)
[20:16:23 -29579.776670] SLOW spr round 25 (radius: 10)
[20:17:44 -29579.776649] SLOW spr round 26 (radius: 15)
[20:19:30 -29579.776647] SLOW spr round 27 (radius: 20)
[20:21:35 -29579.776646] SLOW spr round 28 (radius: 25)
[20:23:49 -29570.352620] SLOW spr round 29 (radius: 5)
[20:25:24 -29485.777110] SLOW spr round 30 (radius: 5)
[20:26:50 -29483.237320] SLOW spr round 31 (radius: 5)
[20:28:10 -29483.234981] SLOW spr round 32 (radius: 10)
[20:29:30 -29478.045889] SLOW spr round 33 (radius: 5)
[20:31:02 -29475.066477] SLOW spr round 34 (radius: 5)
[20:32:27 -29474.473245] SLOW spr round 35 (radius: 5)
[20:33:47 -29474.472448] SLOW spr round 36 (radius: 10)
[20:35:04 -29474.472422] SLOW spr round 37 (radius: 15)
[20:36:53 -29474.472421] SLOW spr round 38 (radius: 20)
[20:39:00 -29474.472420] SLOW spr round 39 (radius: 25)
[20:41:16 -29473.744735] SLOW spr round 40 (radius: 5)
[20:42:50 -29471.582403] SLOW spr round 41 (radius: 5)
[20:44:16 -29471.582333] SLOW spr round 42 (radius: 10)
[20:45:36 -29471.582332] SLOW spr round 43 (radius: 15)
[20:47:23 -29471.582331] SLOW spr round 44 (radius: 20)
[20:49:30 -29471.582331] SLOW spr round 45 (radius: 25)
[20:51:45 -29471.253329] SLOW spr round 46 (radius: 5)
[20:53:19 -29470.879553] SLOW spr round 47 (radius: 5)
[20:54:44 -29470.879546] SLOW spr round 48 (radius: 10)
[20:56:03 -29470.879546] SLOW spr round 49 (radius: 15)
[20:57:49 -29470.879545] SLOW spr round 50 (radius: 20)
[20:59:58 -29470.879545] SLOW spr round 51 (radius: 25)
[21:02:14 -29470.844178] Model parameter optimization (eps = 0.100000)

[21:02:19] ML tree search #12, logLikelihood: -29470.049866

[21:02:19 -76758.742106] Initial branch length optimization
[21:02:20 -63331.302691] Model parameter optimization (eps = 10.000000)
[21:02:41 -63183.156980] AUTODETECT spr round 1 (radius: 5)
[21:03:57 -49802.691138] AUTODETECT spr round 2 (radius: 10)
[21:05:22 -40482.574781] AUTODETECT spr round 3 (radius: 15)
[21:06:58 -36060.724378] AUTODETECT spr round 4 (radius: 20)
[21:08:35 -33865.910979] AUTODETECT spr round 5 (radius: 25)
[21:10:24 -32445.865735] SPR radius for FAST iterations: 25 (autodetect)
[21:10:24 -32445.865735] Model parameter optimization (eps = 3.000000)
[21:10:37 -32330.337681] FAST spr round 1 (radius: 25)
[21:12:33 -30024.977609] FAST spr round 2 (radius: 25)
[21:14:04 -29779.724043] FAST spr round 3 (radius: 25)
[21:15:24 -29736.164085] FAST spr round 4 (radius: 25)
[21:16:39 -29732.108700] FAST spr round 5 (radius: 25)
[21:17:50 -29730.710119] FAST spr round 6 (radius: 25)
[21:19:00 -29727.159115] FAST spr round 7 (radius: 25)
[21:20:09 -29727.158408] Model parameter optimization (eps = 1.000000)
[21:20:23 -29722.690760] SLOW spr round 1 (radius: 5)
[21:21:42 -29711.657940] SLOW spr round 2 (radius: 5)
[21:23:02 -29706.546002] SLOW spr round 3 (radius: 5)
[21:24:20 -29706.544477] SLOW spr round 4 (radius: 10)
[21:25:42 -29703.626944] SLOW spr round 5 (radius: 5)
[21:27:13 -29703.003219] SLOW spr round 6 (radius: 5)
[21:28:38 -29703.002192] SLOW spr round 7 (radius: 10)
[21:29:59 -29702.938120] SLOW spr round 8 (radius: 15)
[21:31:54 -29700.148695] SLOW spr round 9 (radius: 5)
[21:33:26 -29700.129041] SLOW spr round 10 (radius: 10)
[21:34:54 -29699.127179] SLOW spr round 11 (radius: 5)
[21:36:23 -29699.127119] SLOW spr round 12 (radius: 10)
[21:37:46 -29698.379586] SLOW spr round 13 (radius: 5)
[21:39:15 -29698.379534] SLOW spr round 14 (radius: 10)
[21:40:39 -29698.379534] SLOW spr round 15 (radius: 15)
[21:42:29 -29698.379534] SLOW spr round 16 (radius: 20)
[21:44:46 -29696.854974] SLOW spr round 17 (radius: 5)
[21:46:19 -29696.853347] SLOW spr round 18 (radius: 10)
[21:47:47 -29696.853286] SLOW spr round 19 (radius: 15)
[21:49:35 -29696.853283] SLOW spr round 20 (radius: 20)
[21:51:50 -29696.853283] SLOW spr round 21 (radius: 25)
[21:54:09 -29652.454505] SLOW spr round 22 (radius: 5)
[21:55:48 -29621.133885] SLOW spr round 23 (radius: 5)
[21:57:17 -29618.233006] SLOW spr round 24 (radius: 5)
[21:58:39 -29618.232912] SLOW spr round 25 (radius: 10)
[22:00:01 -29617.272289] SLOW spr round 26 (radius: 5)
[22:01:33 -29616.564542] SLOW spr round 27 (radius: 5)
[22:02:57 -29616.564517] SLOW spr round 28 (radius: 10)
[22:04:19 -29616.564517] SLOW spr round 29 (radius: 15)
[22:06:14 -29613.357276] SLOW spr round 30 (radius: 5)
[22:07:46 -29613.357216] SLOW spr round 31 (radius: 10)
[22:09:14 -29613.357215] SLOW spr round 32 (radius: 15)
[22:11:03 -29613.357215] SLOW spr round 33 (radius: 20)
[22:13:20 -29610.650733] SLOW spr round 34 (radius: 5)
[22:14:55 -29610.650733] SLOW spr round 35 (radius: 10)
[22:16:23 -29610.648957] SLOW spr round 36 (radius: 15)
[22:18:11 -29610.648957] SLOW spr round 37 (radius: 20)
[22:20:26 -29610.648957] SLOW spr round 38 (radius: 25)
[22:22:42 -29610.648957] Model parameter optimization (eps = 0.100000)

[22:22:47] ML tree search #13, logLikelihood: -29610.576948

[22:22:47 -77511.815105] Initial branch length optimization
[22:22:49 -64047.701048] Model parameter optimization (eps = 10.000000)
[22:23:08 -63887.340567] AUTODETECT spr round 1 (radius: 5)
[22:24:22 -49948.735640] AUTODETECT spr round 2 (radius: 10)
[22:25:47 -39728.390892] AUTODETECT spr round 3 (radius: 15)
[22:27:18 -35734.473412] AUTODETECT spr round 4 (radius: 20)
[22:28:52 -32864.249803] AUTODETECT spr round 5 (radius: 25)
[22:30:32 -32279.560845] SPR radius for FAST iterations: 25 (autodetect)
[22:30:32 -32279.560845] Model parameter optimization (eps = 3.000000)
[22:30:45 -32144.604124] FAST spr round 1 (radius: 25)
[22:32:39 -29874.375479] FAST spr round 2 (radius: 25)
[22:34:07 -29670.167541] FAST spr round 3 (radius: 25)
[22:35:24 -29644.658188] FAST spr round 4 (radius: 25)
[22:36:37 -29638.709520] FAST spr round 5 (radius: 25)
[22:37:47 -29562.499760] FAST spr round 6 (radius: 25)
[22:38:55 -29562.181699] FAST spr round 7 (radius: 25)
[22:40:01 -29562.181666] Model parameter optimization (eps = 1.000000)
[22:40:08 -29558.434768] SLOW spr round 1 (radius: 5)
[22:41:25 -29546.578817] SLOW spr round 2 (radius: 5)
[22:42:42 -29545.431581] SLOW spr round 3 (radius: 5)
[22:43:57 -29545.431487] SLOW spr round 4 (radius: 10)
[22:45:15 -29542.175974] SLOW spr round 5 (radius: 5)
[22:46:44 -29541.463886] SLOW spr round 6 (radius: 5)
[22:48:07 -29541.463597] SLOW spr round 7 (radius: 10)
[22:49:27 -29541.463590] SLOW spr round 8 (radius: 15)
[22:51:15 -29534.956002] SLOW spr round 9 (radius: 5)
[22:52:48 -29534.510368] SLOW spr round 10 (radius: 5)
[22:54:12 -29534.510139] SLOW spr round 11 (radius: 10)
[22:55:33 -29533.354863] SLOW spr round 12 (radius: 5)
[22:57:02 -29533.354862] SLOW spr round 13 (radius: 10)
[22:58:25 -29533.354862] SLOW spr round 14 (radius: 15)
[23:00:09 -29531.647666] SLOW spr round 15 (radius: 5)
[23:01:41 -29531.647666] SLOW spr round 16 (radius: 10)
[23:03:07 -29531.647666] SLOW spr round 17 (radius: 15)
[23:04:50 -29531.647665] SLOW spr round 18 (radius: 20)
[23:06:57 -29528.760460] SLOW spr round 19 (radius: 5)
[23:08:33 -29526.402861] SLOW spr round 20 (radius: 5)
[23:10:00 -29526.268480] SLOW spr round 21 (radius: 5)
[23:11:20 -29526.268436] SLOW spr round 22 (radius: 10)
[23:12:39 -29526.268435] SLOW spr round 23 (radius: 15)
[23:14:24 -29526.268435] SLOW spr round 24 (radius: 20)
[23:16:27 -29526.268434] SLOW spr round 25 (radius: 25)
[23:18:42 -29522.777093] SLOW spr round 26 (radius: 5)
[23:20:15 -29522.763547] SLOW spr round 27 (radius: 10)
[23:21:42 -29522.763546] SLOW spr round 28 (radius: 15)
[23:23:23 -29522.763546] SLOW spr round 29 (radius: 20)
[23:25:25 -29522.763545] SLOW spr round 30 (radius: 25)
[23:27:38 -29522.763545] Model parameter optimization (eps = 0.100000)

[23:27:43] ML tree search #14, logLikelihood: -29522.736667

[23:27:43 -77220.726205] Initial branch length optimization
[23:27:45 -63728.894921] Model parameter optimization (eps = 10.000000)
[23:28:03 -63579.523293] AUTODETECT spr round 1 (radius: 5)
[23:29:20 -49735.399224] AUTODETECT spr round 2 (radius: 10)
[23:30:47 -40280.791864] AUTODETECT spr round 3 (radius: 15)
[23:32:23 -35868.453812] AUTODETECT spr round 4 (radius: 20)
[23:33:58 -34474.642223] AUTODETECT spr round 5 (radius: 25)
[23:35:48 -33041.648345] SPR radius for FAST iterations: 25 (autodetect)
[23:35:48 -33041.648345] Model parameter optimization (eps = 3.000000)
[23:35:58 -32907.132411] FAST spr round 1 (radius: 25)
[23:37:58 -29980.882784] FAST spr round 2 (radius: 25)
[23:39:27 -29689.523097] FAST spr round 3 (radius: 25)
[23:40:44 -29661.670022] FAST spr round 4 (radius: 25)
[23:41:57 -29613.879841] FAST spr round 5 (radius: 25)
[23:43:06 -29612.997447] FAST spr round 6 (radius: 25)
[23:44:14 -29612.997214] Model parameter optimization (eps = 1.000000)
[23:44:21 -29608.921746] SLOW spr round 1 (radius: 5)
[23:45:41 -29599.539358] SLOW spr round 2 (radius: 5)
[23:47:01 -29594.102973] SLOW spr round 3 (radius: 5)
[23:48:19 -29593.608210] SLOW spr round 4 (radius: 5)
[23:49:38 -29593.607815] SLOW spr round 5 (radius: 10)
[23:50:58 -29588.473369] SLOW spr round 6 (radius: 5)
[23:52:31 -29588.236044] SLOW spr round 7 (radius: 5)
[23:53:56 -29588.235689] SLOW spr round 8 (radius: 10)
[23:55:17 -29587.465369] SLOW spr round 9 (radius: 5)
[23:56:47 -29587.155256] SLOW spr round 10 (radius: 5)
[23:58:11 -29587.154855] SLOW spr round 11 (radius: 10)
[23:59:33 -29587.154642] SLOW spr round 12 (radius: 15)
[24:01:20 -29580.335009] SLOW spr round 13 (radius: 5)
[24:02:56 -29573.894948] SLOW spr round 14 (radius: 5)
[24:04:23 -29572.440632] SLOW spr round 15 (radius: 5)
[24:05:45 -29572.440553] SLOW spr round 16 (radius: 10)
[24:07:04 -29572.439034] SLOW spr round 17 (radius: 15)
[24:08:51 -29572.163344] SLOW spr round 18 (radius: 5)
[24:10:23 -29572.163311] SLOW spr round 19 (radius: 10)
[24:11:50 -29572.163311] SLOW spr round 20 (radius: 15)
[24:13:31 -29572.163311] SLOW spr round 21 (radius: 20)
[24:15:33 -29563.667959] SLOW spr round 22 (radius: 5)
[24:17:06 -29563.280992] SLOW spr round 23 (radius: 5)
[24:18:31 -29563.280984] SLOW spr round 24 (radius: 10)
[24:19:53 -29561.755030] SLOW spr round 25 (radius: 5)
[24:21:21 -29561.754988] SLOW spr round 26 (radius: 10)
[24:22:45 -29561.754988] SLOW spr round 27 (radius: 15)
[24:24:28 -29555.775025] SLOW spr round 28 (radius: 5)
[24:26:01 -29553.579898] SLOW spr round 29 (radius: 5)
[24:27:27 -29553.294528] SLOW spr round 30 (radius: 5)
[24:28:47 -29552.261220] SLOW spr round 31 (radius: 5)
[24:30:05 -29552.261176] SLOW spr round 32 (radius: 10)
[24:31:24 -29552.261176] SLOW spr round 33 (radius: 15)
[24:33:12 -29548.805675] SLOW spr round 34 (radius: 5)
[24:34:46 -29543.610330] SLOW spr round 35 (radius: 5)
[24:36:13 -29542.277823] SLOW spr round 36 (radius: 5)
[24:37:35 -29542.277789] SLOW spr round 37 (radius: 10)
[24:38:56 -29540.478122] SLOW spr round 38 (radius: 5)
[24:40:27 -29540.478064] SLOW spr round 39 (radius: 10)
[24:41:53 -29540.478062] SLOW spr round 40 (radius: 15)
[24:43:40 -29537.677312] SLOW spr round 41 (radius: 5)
[24:45:13 -29537.677287] SLOW spr round 42 (radius: 10)
[24:46:41 -29537.677286] SLOW spr round 43 (radius: 15)
[24:48:26 -29537.677286] SLOW spr round 44 (radius: 20)
[24:50:35 -29521.402031] SLOW spr round 45 (radius: 5)
[24:52:12 -29516.202551] SLOW spr round 46 (radius: 5)
[24:53:41 -29515.661248] SLOW spr round 47 (radius: 5)
[24:55:05 -29515.349663] SLOW spr round 48 (radius: 5)
[24:56:25 -29515.204776] SLOW spr round 49 (radius: 5)
[24:57:44 -29515.204574] SLOW spr round 50 (radius: 10)
[24:59:04 -29515.204573] SLOW spr round 51 (radius: 15)
[25:00:55 -29515.204573] SLOW spr round 52 (radius: 20)
[25:03:00 -29503.056841] SLOW spr round 53 (radius: 5)
[25:04:36 -29500.063799] SLOW spr round 54 (radius: 5)
[25:06:03 -29500.061064] SLOW spr round 55 (radius: 10)
[25:07:25 -29499.394400] SLOW spr round 56 (radius: 5)
[25:08:55 -29497.604511] SLOW spr round 57 (radius: 5)
[25:10:19 -29497.604430] SLOW spr round 58 (radius: 10)
[25:11:39 -29497.604429] SLOW spr round 59 (radius: 15)
[25:13:29 -29496.413593] SLOW spr round 60 (radius: 5)
[25:15:01 -29496.413244] SLOW spr round 61 (radius: 10)
[25:16:28 -29496.413239] SLOW spr round 62 (radius: 15)
[25:18:12 -29496.413239] SLOW spr round 63 (radius: 20)
[25:20:17 -29496.413239] SLOW spr round 64 (radius: 25)
[25:22:32 -29496.395412] Model parameter optimization (eps = 0.100000)

[25:22:37] ML tree search #15, logLikelihood: -29496.040583

[25:22:37 -77474.957829] Initial branch length optimization
[25:22:38 -63837.576850] Model parameter optimization (eps = 10.000000)
[25:22:52 -63672.970791] AUTODETECT spr round 1 (radius: 5)
[25:24:09 -49480.219798] AUTODETECT spr round 2 (radius: 10)
[25:25:34 -39420.010951] AUTODETECT spr round 3 (radius: 15)
[25:27:05 -35710.224035] AUTODETECT spr round 4 (radius: 20)
[25:28:45 -34101.824750] AUTODETECT spr round 5 (radius: 25)
[25:30:37 -32922.645680] SPR radius for FAST iterations: 25 (autodetect)
[25:30:37 -32922.645680] Model parameter optimization (eps = 3.000000)
[25:30:47 -32789.094668] FAST spr round 1 (radius: 25)
[25:32:44 -29828.545546] FAST spr round 2 (radius: 25)
[25:34:16 -29576.914684] FAST spr round 3 (radius: 25)
[25:35:35 -29530.310378] FAST spr round 4 (radius: 25)
[25:36:52 -29511.813876] FAST spr round 5 (radius: 25)
[25:38:04 -29508.754023] FAST spr round 6 (radius: 25)
[25:39:15 -29508.752713] Model parameter optimization (eps = 1.000000)
[25:39:21 -29504.174522] SLOW spr round 1 (radius: 5)
[25:40:42 -29494.975627] SLOW spr round 2 (radius: 5)
[25:42:02 -29493.313106] SLOW spr round 3 (radius: 5)
[25:43:20 -29493.312625] SLOW spr round 4 (radius: 10)
[25:44:41 -29488.782829] SLOW spr round 5 (radius: 5)
[25:46:13 -29488.777139] SLOW spr round 6 (radius: 10)
[25:47:39 -29488.060358] SLOW spr round 7 (radius: 5)
[25:49:11 -29487.112356] SLOW spr round 8 (radius: 5)
[25:50:35 -29487.111671] SLOW spr round 9 (radius: 10)
[25:51:56 -29487.111611] SLOW spr round 10 (radius: 15)
[25:53:47 -29479.876242] SLOW spr round 11 (radius: 5)
[25:55:22 -29476.555655] SLOW spr round 12 (radius: 5)
[25:56:47 -29476.555483] SLOW spr round 13 (radius: 10)
[25:58:09 -29474.350643] SLOW spr round 14 (radius: 5)
[25:59:38 -29474.350343] SLOW spr round 15 (radius: 10)
[26:01:02 -29474.350325] SLOW spr round 16 (radius: 15)
[26:02:48 -29473.923368] SLOW spr round 17 (radius: 5)
[26:04:20 -29473.914771] SLOW spr round 18 (radius: 10)
[26:05:47 -29473.914759] SLOW spr round 19 (radius: 15)
[26:07:32 -29473.914756] SLOW spr round 20 (radius: 20)
[26:09:39 -29471.062868] SLOW spr round 21 (radius: 5)
[26:11:12 -29471.062745] SLOW spr round 22 (radius: 10)
[26:12:41 -29471.062743] SLOW spr round 23 (radius: 15)
[26:14:26 -29471.062741] SLOW spr round 24 (radius: 20)
[26:16:35 -29471.062739] SLOW spr round 25 (radius: 25)
[26:19:00 -29465.086722] SLOW spr round 26 (radius: 5)
[26:20:35 -29465.085900] SLOW spr round 27 (radius: 10)
[26:22:06 -29465.085886] SLOW spr round 28 (radius: 15)
[26:23:49 -29465.085884] SLOW spr round 29 (radius: 20)
[26:25:57 -29465.085883] SLOW spr round 30 (radius: 25)
[26:28:23 -29464.954328] SLOW spr round 31 (radius: 5)
[26:29:59 -29461.837975] SLOW spr round 32 (radius: 5)
[26:31:28 -29461.830150] SLOW spr round 33 (radius: 10)
[26:32:51 -29461.830121] SLOW spr round 34 (radius: 15)
[26:34:39 -29461.830117] SLOW spr round 35 (radius: 20)
[26:36:48 -29461.830116] SLOW spr round 36 (radius: 25)
[26:39:16 -29461.830116] Model parameter optimization (eps = 0.100000)

[26:39:19] ML tree search #16, logLikelihood: -29461.805111

[26:39:19 -76655.218082] Initial branch length optimization
[26:39:20 -63761.132569] Model parameter optimization (eps = 10.000000)
[26:39:40 -63601.379195] AUTODETECT spr round 1 (radius: 5)
[26:40:58 -49596.715064] AUTODETECT spr round 2 (radius: 10)
[26:42:25 -40963.045670] AUTODETECT spr round 3 (radius: 15)
[26:44:02 -37430.722703] AUTODETECT spr round 4 (radius: 20)
[26:45:44 -35688.939551] AUTODETECT spr round 5 (radius: 25)
[26:47:30 -34675.752463] SPR radius for FAST iterations: 25 (autodetect)
[26:47:30 -34675.752463] Model parameter optimization (eps = 3.000000)
[26:47:40 -34565.308361] FAST spr round 1 (radius: 25)
[26:49:34 -31611.884171] FAST spr round 2 (radius: 25)
[26:51:10 -31142.268228] FAST spr round 3 (radius: 25)
[26:52:33 -30948.197836] FAST spr round 4 (radius: 25)
[26:53:50 -30931.314881] FAST spr round 5 (radius: 25)
[26:55:04 -30927.143888] FAST spr round 6 (radius: 25)
[26:56:14 -30927.143635] Model parameter optimization (eps = 1.000000)
[26:56:23 -30919.764484] SLOW spr round 1 (radius: 5)
[26:57:46 -30910.732493] SLOW spr round 2 (radius: 5)
[26:59:07 -30909.816743] SLOW spr round 3 (radius: 5)
[27:00:25 -30909.815246] SLOW spr round 4 (radius: 10)
[27:01:43 -30908.282760] SLOW spr round 5 (radius: 5)
[27:03:13 -30908.282714] SLOW spr round 6 (radius: 10)
[27:04:37 -30905.985606] SLOW spr round 7 (radius: 5)
[27:06:09 -30904.333805] SLOW spr round 8 (radius: 5)
[27:07:34 -30901.711186] SLOW spr round 9 (radius: 5)
[27:08:55 -30901.711044] SLOW spr round 10 (radius: 10)
[27:10:16 -30899.311650] SLOW spr round 11 (radius: 5)
[27:11:51 -30895.513689] SLOW spr round 12 (radius: 5)
[27:13:16 -30895.513362] SLOW spr round 13 (radius: 10)
[27:14:36 -30895.513357] SLOW spr round 14 (radius: 15)
[27:16:28 -30891.320625] SLOW spr round 15 (radius: 5)
[27:18:05 -30891.122620] SLOW spr round 16 (radius: 5)
[27:19:33 -30891.094409] SLOW spr round 17 (radius: 10)
[27:20:56 -30891.094408] SLOW spr round 18 (radius: 15)
[27:22:45 -30890.354349] SLOW spr round 19 (radius: 5)
[27:24:21 -30890.354349] SLOW spr round 20 (radius: 10)
[27:25:49 -30890.354349] SLOW spr round 21 (radius: 15)
[27:27:35 -30890.354349] SLOW spr round 22 (radius: 20)
[27:29:46 -30887.182069] SLOW spr round 23 (radius: 5)
[27:31:25 -30881.374715] SLOW spr round 24 (radius: 5)
[27:32:55 -30881.374069] SLOW spr round 25 (radius: 10)
[27:34:19 -30881.373952] SLOW spr round 26 (radius: 15)
[27:36:08 -30881.373920] SLOW spr round 27 (radius: 20)
[27:38:21 -30880.644176] SLOW spr round 28 (radius: 5)
[27:40:00 -30880.115846] SLOW spr round 29 (radius: 5)
[27:41:30 -30880.115842] SLOW spr round 30 (radius: 10)
[27:42:55 -30875.372136] SLOW spr round 31 (radius: 5)
[27:44:30 -30875.327766] SLOW spr round 32 (radius: 10)
[27:45:57 -30874.323803] SLOW spr round 33 (radius: 5)
[27:47:31 -30874.323799] SLOW spr round 34 (radius: 10)
[27:48:58 -30874.323799] SLOW spr round 35 (radius: 15)
[27:50:48 -30874.323799] SLOW spr round 36 (radius: 20)
[27:53:04 -30872.640409] SLOW spr round 37 (radius: 5)
[27:54:42 -30871.185413] SLOW spr round 38 (radius: 5)
[27:56:10 -30871.184739] SLOW spr round 39 (radius: 10)
[27:57:33 -30871.184733] SLOW spr round 40 (radius: 15)
[27:59:21 -30871.184732] SLOW spr round 41 (radius: 20)
[28:01:31 -30869.657224] SLOW spr round 42 (radius: 5)
[28:03:09 -30865.396931] SLOW spr round 43 (radius: 5)
[28:04:37 -30865.396666] SLOW spr round 44 (radius: 10)
[28:05:59 -30865.396663] SLOW spr round 45 (radius: 15)
[28:07:46 -30865.396663] SLOW spr round 46 (radius: 20)
[28:09:53 -30865.396663] SLOW spr round 47 (radius: 25)
[28:12:18 -30865.396663] Model parameter optimization (eps = 0.100000)

[28:12:23] ML tree search #17, logLikelihood: -30865.252031

[28:12:23 -77319.722219] Initial branch length optimization
[28:12:25 -63731.813249] Model parameter optimization (eps = 10.000000)
[28:12:46 -63585.582473] AUTODETECT spr round 1 (radius: 5)
[28:14:00 -49737.717720] AUTODETECT spr round 2 (radius: 10)
[28:15:25 -39607.770833] AUTODETECT spr round 3 (radius: 15)
[28:16:57 -35588.964951] AUTODETECT spr round 4 (radius: 20)
[28:18:31 -34065.730477] AUTODETECT spr round 5 (radius: 25)
[28:20:17 -33363.754858] SPR radius for FAST iterations: 25 (autodetect)
[28:20:17 -33363.754858] Model parameter optimization (eps = 3.000000)
[28:20:27 -33233.143651] FAST spr round 1 (radius: 25)
[28:22:23 -30730.184869] FAST spr round 2 (radius: 25)
[28:23:51 -30299.242809] FAST spr round 3 (radius: 25)
[28:25:07 -30209.504296] FAST spr round 4 (radius: 25)
[28:26:20 -30196.058975] FAST spr round 5 (radius: 25)
[28:27:28 -30189.500381] FAST spr round 6 (radius: 25)
[28:28:34 -30189.499936] Model parameter optimization (eps = 1.000000)
[28:28:42 -30184.666045] SLOW spr round 1 (radius: 5)
[28:29:59 -30178.578677] SLOW spr round 2 (radius: 5)
[28:31:15 -30178.459626] SLOW spr round 3 (radius: 5)
[28:32:30 -30178.459442] SLOW spr round 4 (radius: 10)
[28:33:47 -30172.213239] SLOW spr round 5 (radius: 5)
[28:35:16 -30171.696763] SLOW spr round 6 (radius: 5)
[28:36:37 -30171.693896] SLOW spr round 7 (radius: 10)
[28:37:54 -30171.542023] SLOW spr round 8 (radius: 5)
[28:39:20 -30171.541944] SLOW spr round 9 (radius: 10)
[28:40:41 -30171.541937] SLOW spr round 10 (radius: 15)
[28:42:22 -30166.315311] SLOW spr round 11 (radius: 5)
[28:43:51 -30166.315266] SLOW spr round 12 (radius: 10)
[28:45:14 -30166.315264] SLOW spr round 13 (radius: 15)
[28:46:53 -30166.315264] SLOW spr round 14 (radius: 20)
[28:48:54 -30166.315264] SLOW spr round 15 (radius: 25)
[28:51:11 -30164.458709] SLOW spr round 16 (radius: 5)
[28:52:44 -30164.148709] SLOW spr round 17 (radius: 5)
[28:54:08 -30164.148329] SLOW spr round 18 (radius: 10)
[28:55:27 -30163.480661] SLOW spr round 19 (radius: 5)
[28:56:53 -30163.480543] SLOW spr round 20 (radius: 10)
[28:58:14 -30163.480533] SLOW spr round 21 (radius: 15)
[28:59:53 -30163.480532] SLOW spr round 22 (radius: 20)
[29:01:54 -30163.480532] SLOW spr round 23 (radius: 25)
[29:04:11 -30162.831666] SLOW spr round 24 (radius: 5)
[29:05:42 -30162.831666] SLOW spr round 25 (radius: 10)
[29:07:07 -30162.831666] SLOW spr round 26 (radius: 15)
[29:08:46 -30162.831666] SLOW spr round 27 (radius: 20)
[29:10:48 -30162.831666] SLOW spr round 28 (radius: 25)
[29:13:06 -30162.831666] Model parameter optimization (eps = 0.100000)

[29:13:08] ML tree search #18, logLikelihood: -30162.789748

[29:13:09 -77406.111965] Initial branch length optimization
[29:13:10 -64075.374330] Model parameter optimization (eps = 10.000000)
[29:13:25 -63933.333134] AUTODETECT spr round 1 (radius: 5)
[29:14:40 -49495.370622] AUTODETECT spr round 2 (radius: 10)
[29:16:04 -39433.272448] AUTODETECT spr round 3 (radius: 15)
[29:17:34 -35747.368102] AUTODETECT spr round 4 (radius: 20)
[29:19:11 -33825.047311] AUTODETECT spr round 5 (radius: 25)
[29:20:54 -33022.402640] SPR radius for FAST iterations: 25 (autodetect)
[29:20:54 -33022.402640] Model parameter optimization (eps = 3.000000)
[29:21:03 -32914.035606] FAST spr round 1 (radius: 25)
[29:22:57 -30189.652167] FAST spr round 2 (radius: 25)
[29:24:24 -29976.526693] FAST spr round 3 (radius: 25)
[29:25:41 -29915.557565] FAST spr round 4 (radius: 25)
[29:26:53 -29857.415394] FAST spr round 5 (radius: 25)
[29:28:04 -29842.203784] FAST spr round 6 (radius: 25)
[29:29:12 -29819.601916] FAST spr round 7 (radius: 25)
[29:30:19 -29816.521414] FAST spr round 8 (radius: 25)
[29:31:25 -29816.520586] Model parameter optimization (eps = 1.000000)
[29:31:36 -29811.397509] SLOW spr round 1 (radius: 5)
[29:32:52 -29802.632539] SLOW spr round 2 (radius: 5)
[29:34:07 -29802.632162] SLOW spr round 3 (radius: 10)
[29:35:23 -29801.472884] SLOW spr round 4 (radius: 5)
[29:36:51 -29801.471858] SLOW spr round 5 (radius: 10)
[29:38:13 -29800.676952] SLOW spr round 6 (radius: 5)
[29:39:39 -29800.676911] SLOW spr round 7 (radius: 10)
[29:41:02 -29796.632115] SLOW spr round 8 (radius: 5)
[29:42:29 -29796.632006] SLOW spr round 9 (radius: 10)
[29:43:51 -29796.063614] SLOW spr round 10 (radius: 5)
[29:45:18 -29796.063609] SLOW spr round 11 (radius: 10)
[29:46:40 -29796.063609] SLOW spr round 12 (radius: 15)
[29:48:24 -29790.281991] SLOW spr round 13 (radius: 5)
[29:49:55 -29789.721205] SLOW spr round 14 (radius: 5)
[29:51:18 -29789.720970] SLOW spr round 15 (radius: 10)
[29:52:38 -29789.720961] SLOW spr round 16 (radius: 15)
[29:54:22 -29788.934348] SLOW spr round 17 (radius: 5)
[29:55:52 -29788.934346] SLOW spr round 18 (radius: 10)
[29:57:17 -29788.934346] SLOW spr round 19 (radius: 15)
[29:58:58 -29788.934346] SLOW spr round 20 (radius: 20)
[30:01:03 -29771.637203] SLOW spr round 21 (radius: 5)
[30:02:36 -29770.829527] SLOW spr round 22 (radius: 5)
[30:04:00 -29770.829490] SLOW spr round 23 (radius: 10)
[30:05:19 -29768.065000] SLOW spr round 24 (radius: 5)
[30:06:48 -29764.216217] SLOW spr round 25 (radius: 5)
[30:08:09 -29764.216179] SLOW spr round 26 (radius: 10)
[30:09:27 -29764.216178] SLOW spr round 27 (radius: 15)
[30:11:12 -29763.513089] SLOW spr round 28 (radius: 5)
[30:12:41 -29763.513082] SLOW spr round 29 (radius: 10)
[30:14:05 -29762.168002] SLOW spr round 30 (radius: 5)
[30:15:32 -29762.164426] SLOW spr round 31 (radius: 10)
[30:16:53 -29762.164425] SLOW spr round 32 (radius: 15)
[30:18:35 -29761.250055] SLOW spr round 33 (radius: 5)
[30:20:05 -29759.363566] SLOW spr round 34 (radius: 5)
[30:21:27 -29759.363554] SLOW spr round 35 (radius: 10)
[30:22:46 -29759.363549] SLOW spr round 36 (radius: 15)
[30:24:30 -29759.363549] SLOW spr round 37 (radius: 20)
[30:26:32 -29757.854315] SLOW spr round 38 (radius: 5)
[30:28:04 -29755.712210] SLOW spr round 39 (radius: 5)
[30:29:28 -29755.711206] SLOW spr round 40 (radius: 10)
[30:30:47 -29755.711166] SLOW spr round 41 (radius: 15)
[30:32:30 -29755.711164] SLOW spr round 42 (radius: 20)
[30:34:32 -29749.129212] SLOW spr round 43 (radius: 5)
[30:36:02 -29749.129200] SLOW spr round 44 (radius: 10)
[30:37:28 -29745.458713] SLOW spr round 45 (radius: 5)
[30:38:54 -29743.511881] SLOW spr round 46 (radius: 5)
[30:40:14 -29743.511863] SLOW spr round 47 (radius: 10)
[30:41:32 -29743.511863] SLOW spr round 48 (radius: 15)
[30:43:16 -29743.511863] SLOW spr round 49 (radius: 20)
[30:45:17 -29743.511863] SLOW spr round 50 (radius: 25)
[30:47:31 -29695.343326] SLOW spr round 51 (radius: 5)
[30:49:05 -29687.638532] SLOW spr round 52 (radius: 5)
[30:50:31 -29686.818135] SLOW spr round 53 (radius: 5)
[30:51:52 -29686.559206] SLOW spr round 54 (radius: 5)
[30:53:10 -29686.558858] SLOW spr round 55 (radius: 10)
[30:54:27 -29686.088928] SLOW spr round 56 (radius: 5)
[30:55:57 -29685.684245] SLOW spr round 57 (radius: 5)
[30:57:18 -29685.684130] SLOW spr round 58 (radius: 10)
[30:58:36 -29685.684125] SLOW spr round 59 (radius: 15)
[31:00:23 -29685.684125] SLOW spr round 60 (radius: 20)
[31:02:26 -29684.484874] SLOW spr round 61 (radius: 5)
[31:03:58 -29679.404589] SLOW spr round 62 (radius: 5)
[31:05:21 -29679.404365] SLOW spr round 63 (radius: 10)
[31:06:40 -29679.404317] SLOW spr round 64 (radius: 15)
[31:08:26 -29679.404305] SLOW spr round 65 (radius: 20)
[31:10:28 -29679.404302] SLOW spr round 66 (radius: 25)
[31:12:42 -29674.851251] SLOW spr round 67 (radius: 5)
[31:14:17 -29648.782056] SLOW spr round 68 (radius: 5)
[31:15:42 -29648.405933] SLOW spr round 69 (radius: 5)
[31:17:02 -29648.405918] SLOW spr round 70 (radius: 10)
[31:18:19 -29648.405918] SLOW spr round 71 (radius: 15)
[31:20:08 -29646.665761] SLOW spr round 72 (radius: 5)
[31:21:40 -29644.118887] SLOW spr round 73 (radius: 5)
[31:23:03 -29643.873509] SLOW spr round 74 (radius: 5)
[31:24:23 -29643.483001] SLOW spr round 75 (radius: 5)
[31:25:39 -29643.482687] SLOW spr round 76 (radius: 10)
[31:26:57 -29640.882056] SLOW spr round 77 (radius: 5)
[31:28:25 -29640.461483] SLOW spr round 78 (radius: 5)
[31:29:46 -29640.461477] SLOW spr round 79 (radius: 10)
[31:31:05 -29638.494160] SLOW spr round 80 (radius: 5)
[31:32:33 -29636.098867] SLOW spr round 81 (radius: 5)
[31:33:55 -29636.097116] SLOW spr round 82 (radius: 10)
[31:35:13 -29636.097058] SLOW spr round 83 (radius: 15)
[31:37:01 -29636.097056] SLOW spr round 84 (radius: 20)
[31:39:06 -29633.792021] SLOW spr round 85 (radius: 5)
[31:40:37 -29633.791569] SLOW spr round 86 (radius: 10)
[31:42:04 -29633.791541] SLOW spr round 87 (radius: 15)
[31:43:48 -29633.791538] SLOW spr round 88 (radius: 20)
[31:45:53 -29633.791538] SLOW spr round 89 (radius: 25)
[31:48:07 -29600.020890] SLOW spr round 90 (radius: 5)
[31:49:41 -29598.605559] SLOW spr round 91 (radius: 5)
[31:51:04 -29598.605264] SLOW spr round 92 (radius: 10)
[31:52:23 -29598.605240] SLOW spr round 93 (radius: 15)
[31:54:08 -29598.605238] SLOW spr round 94 (radius: 20)
[31:56:14 -29598.605238] SLOW spr round 95 (radius: 25)
[31:58:28 -29598.605238] Model parameter optimization (eps = 0.100000)

[31:58:32] ML tree search #19, logLikelihood: -29598.297221

[31:58:32 -77004.124899] Initial branch length optimization
[31:58:34 -63682.329764] Model parameter optimization (eps = 10.000000)
[31:58:51 -63545.301557] AUTODETECT spr round 1 (radius: 5)
[32:00:06 -49548.172822] AUTODETECT spr round 2 (radius: 10)
[32:01:29 -40527.674220] AUTODETECT spr round 3 (radius: 15)
[32:03:04 -35371.362593] AUTODETECT spr round 4 (radius: 20)
[32:04:43 -33489.464168] AUTODETECT spr round 5 (radius: 25)
[32:06:21 -32676.209674] SPR radius for FAST iterations: 25 (autodetect)
[32:06:21 -32676.209674] Model parameter optimization (eps = 3.000000)
[32:06:32 -32570.266170] FAST spr round 1 (radius: 25)
[32:08:25 -30200.091548] FAST spr round 2 (radius: 25)
[32:09:55 -29787.839133] FAST spr round 3 (radius: 25)
[32:11:13 -29688.377960] FAST spr round 4 (radius: 25)
[32:12:26 -29671.686994] FAST spr round 5 (radius: 25)
[32:13:36 -29667.826636] FAST spr round 6 (radius: 25)
[32:14:43 -29667.825570] Model parameter optimization (eps = 1.000000)
[32:14:52 -29663.251729] SLOW spr round 1 (radius: 5)
[32:16:10 -29651.867378] SLOW spr round 2 (radius: 5)
[32:17:28 -29649.420182] SLOW spr round 3 (radius: 5)
[32:18:44 -29649.411978] SLOW spr round 4 (radius: 10)
[32:20:05 -29644.391954] SLOW spr round 5 (radius: 5)
[32:21:35 -29641.293175] SLOW spr round 6 (radius: 5)
[32:22:56 -29641.292550] SLOW spr round 7 (radius: 10)
[32:24:17 -29639.217782] SLOW spr round 8 (radius: 5)
[32:25:46 -29638.849019] SLOW spr round 9 (radius: 5)
[32:27:08 -29638.848951] SLOW spr round 10 (radius: 10)
[32:28:27 -29638.848949] SLOW spr round 11 (radius: 15)
[32:30:20 -29621.921957] SLOW spr round 12 (radius: 5)
[32:31:53 -29617.697520] SLOW spr round 13 (radius: 5)
[32:33:17 -29611.519280] SLOW spr round 14 (radius: 5)
[32:34:36 -29611.126747] SLOW spr round 15 (radius: 5)
[32:35:54 -29611.126617] SLOW spr round 16 (radius: 10)
[32:37:13 -29607.852529] SLOW spr round 17 (radius: 5)
[32:38:42 -29606.019986] SLOW spr round 18 (radius: 5)
[32:40:03 -29606.019770] SLOW spr round 19 (radius: 10)
[32:41:23 -29606.019543] SLOW spr round 20 (radius: 15)
[32:43:11 -29606.019303] SLOW spr round 21 (radius: 20)
[32:45:19 -29600.368196] SLOW spr round 22 (radius: 5)
[32:46:53 -29599.036338] SLOW spr round 23 (radius: 5)
[32:48:20 -29595.961964] SLOW spr round 24 (radius: 5)
[32:49:39 -29595.961398] SLOW spr round 25 (radius: 10)
[32:50:58 -29595.961322] SLOW spr round 26 (radius: 15)
[32:52:47 -29595.961321] SLOW spr round 27 (radius: 20)
[32:54:53 -29591.803533] SLOW spr round 28 (radius: 5)
[32:56:26 -29590.923089] SLOW spr round 29 (radius: 5)
[32:57:50 -29590.917658] SLOW spr round 30 (radius: 10)
[32:59:10 -29590.917656] SLOW spr round 31 (radius: 15)
[33:00:55 -29590.917655] SLOW spr round 32 (radius: 20)
[33:03:01 -29590.917653] SLOW spr round 33 (radius: 25)
[33:05:21 -29525.237778] SLOW spr round 34 (radius: 5)
[33:06:55 -29517.117694] SLOW spr round 35 (radius: 5)
[33:08:21 -29517.080993] SLOW spr round 36 (radius: 10)
[33:09:42 -29516.559716] SLOW spr round 37 (radius: 5)
[33:11:10 -29516.559421] SLOW spr round 38 (radius: 10)
[33:12:33 -29516.559329] SLOW spr round 39 (radius: 15)
[33:14:19 -29513.516343] SLOW spr round 40 (radius: 5)
[33:15:50 -29513.516268] SLOW spr round 41 (radius: 10)
[33:17:16 -29513.516257] SLOW spr round 42 (radius: 15)
[33:19:01 -29513.516252] SLOW spr round 43 (radius: 20)
[33:21:11 -29513.516250] SLOW spr round 44 (radius: 25)
[33:23:31 -29513.168300] SLOW spr round 45 (radius: 5)
[33:25:05 -29512.679173] SLOW spr round 46 (radius: 5)
[33:26:30 -29512.679072] SLOW spr round 47 (radius: 10)
[33:27:51 -29512.679071] SLOW spr round 48 (radius: 15)
[33:29:39 -29512.679069] SLOW spr round 49 (radius: 20)
[33:31:47 -29512.679068] SLOW spr round 50 (radius: 25)
[33:34:05 -29512.679066] Model parameter optimization (eps = 0.100000)

[33:34:11] ML tree search #20, logLikelihood: -29512.428568


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.177803,0.358083) (0.266678,0.540530) (0.333298,1.072582) (0.222220,1.956142) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -29403.635231

AIC score: 62789.270462 / AICc score: 7994933.270462 / BIC score: 66386.335479
Free parameters (model + branch lengths): 1991

WARNING: Number of free parameters (K=1991) is larger than alignment size (n=45).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 298 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NI47/3_mltree/A6NI47.raxml.bestTreeCollapsed
Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NI47/3_mltree/A6NI47.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NI47/3_mltree/A6NI47.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NI47/3_mltree/A6NI47.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NI47/3_mltree/A6NI47.raxml.log

Analysis started: 01-Jul-2021 11:32:20 / finished: 02-Jul-2021 21:06:31

Elapsed time: 120851.380 seconds