RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 17:43:27 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NHY2/2_msa/A6NHY2_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NHY2/3_mltree/A6NHY2.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NHY2/4_raxmlng_ancestral/A6NHY2 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626101007 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NHY2/2_msa/A6NHY2_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 528 sites WARNING: Sequences tr_A0A1D5NW34_A0A1D5NW34_CHICK_9031 and tr_G3UQS6_G3UQS6_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_U3IJ93_U3IJ93_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A091VE49_A0A091VE49_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NLN5_F1NLN5_CHICK_9031 and tr_A0A226PZ47_A0A226PZ47_COLVI_9014 are exactly identical! WARNING: Sequences tr_M3Z111_M3Z111_MUSPF_9669 and tr_E2RR81_E2RR81_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z111_M3Z111_MUSPF_9669 and tr_W5Q672_W5Q672_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Z111_M3Z111_MUSPF_9669 and tr_D2HEA0_D2HEA0_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z111_M3Z111_MUSPF_9669 and tr_E1B7G6_E1B7G6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Z111_M3Z111_MUSPF_9669 and tr_A0A2U3X075_A0A2U3X075_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z111_M3Z111_MUSPF_9669 and tr_A0A2U3Y629_A0A2U3Y629_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z111_M3Z111_MUSPF_9669 and tr_A0A2Y9KE62_A0A2Y9KE62_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z111_M3Z111_MUSPF_9669 and tr_A0A384BYR1_A0A384BYR1_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3HLI6_A0A2I3HLI6_NOMLE_61853 and tr_A0A2I2YDH9_A0A2I2YDH9_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HLI6_A0A2I3HLI6_NOMLE_61853 and tr_A0A2I3MIE6_A0A2I3MIE6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HLI6_A0A2I3HLI6_NOMLE_61853 and tr_A0A2K5LPM7_A0A2K5LPM7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HLI6_A0A2I3HLI6_NOMLE_61853 and tr_A0A2K6DJR0_A0A2K6DJR0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HLI6_A0A2I3HLI6_NOMLE_61853 and tr_A0A2K5YP31_A0A2K5YP31_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_G3S4C5_G3S4C5_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_H2PE56_H2PE56_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_G1SZP4_G1SZP4_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_H2R3U2_H2R3U2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and sp_Q01484_ANK2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_F7H4E0_F7H4E0_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A287AUI5_A0A287AUI5_PIG_9823 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_G7P649_G7P649_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A337SR04_A0A337SR04_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A096N0E1_A0A096N0E1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A2K5MCB6_A0A2K5MCB6_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A2K5YPQ5_A0A2K5YPQ5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A2R9BUB3_A0A2R9BUB3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A2U3WE70_A0A2U3WE70_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A2Y9K0E1_A0A2Y9K0E1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A384BYK5_A0A384BYK5_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1PU53_G1PU53_MYOLU_59463 and tr_I3LD98_I3LD98_PIG_9823 are exactly identical! WARNING: Sequences tr_G3QPN1_G3QPN1_GORGO_9595 and tr_A0A1D5R4M1_A0A1D5R4M1_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QPN1_G3QPN1_GORGO_9595 and tr_A0A096NWL9_A0A096NWL9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QPN1_G3QPN1_GORGO_9595 and tr_A0A0D9RWC2_A0A0D9RWC2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QPN1_G3QPN1_GORGO_9595 and tr_A0A2K5NVN5_A0A2K5NVN5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QPN1_G3QPN1_GORGO_9595 and tr_A0A2K6C4V4_A0A2K6C4V4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QPN1_G3QPN1_GORGO_9595 and tr_A0A2R9AY67_A0A2R9AY67_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A0Q3UT44_A0A0Q3UT44_AMAAE_12930 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A093JU25_A0A093JU25_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A091G422_A0A091G422_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A0A0ATJ5_A0A0A0ATJ5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A1V4KC98_A0A1V4KC98_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0R3NVX8_A0A0R3NVX8_DROPS_46245 and tr_B4H9M9_B4H9M9_DROPE_7234 are exactly identical! WARNING: Sequences tr_J9NS42_J9NS42_CANLF_9615 and tr_A0A2Y9KGW3_A0A2Y9KGW3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3TF47_A0A2I3TF47_PANTR_9598 and tr_A0A2R9CIP4_A0A2R9CIP4_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3TN78_A0A2I3TN78_PANTR_9598 and sp_Q8N8A2_ANR44_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3TN78_A0A2I3TN78_PANTR_9598 and tr_A0A0D9RGJ7_A0A0D9RGJ7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3TN78_A0A2I3TN78_PANTR_9598 and tr_A0A2K5M793_A0A2K5M793_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3TN78_A0A2I3TN78_PANTR_9598 and tr_A0A2K5YVV3_A0A2K5YVV3_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3TN78_A0A2I3TN78_PANTR_9598 and tr_A0A2R9AU58_A0A2R9AU58_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7CR95_F7CR95_MONDO_13616 and tr_G3VYV3_G3VYV3_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A087ZS21_A0A087ZS21_APIME_7460 and tr_A0A2A3E9M4_A0A2A3E9M4_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NYG9_A0A158NYG9_ATTCE_12957 and tr_F4WT31_F4WT31_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NYG9_A0A158NYG9_ATTCE_12957 and tr_A0A151J9H4_A0A151J9H4_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NYG9_A0A158NYG9_ATTCE_12957 and tr_A0A195F701_A0A195F701_9HYME_34720 are exactly identical! WARNING: Sequences sp_O15084_ANR28_HUMAN_9606 and tr_F7E5S7_F7E5S7_MACMU_9544 are exactly identical! WARNING: Sequences sp_O15084_ANR28_HUMAN_9606 and tr_G7NY15_G7NY15_MACFA_9541 are exactly identical! WARNING: Sequences sp_O15084_ANR28_HUMAN_9606 and tr_A0A0D9RCK6_A0A0D9RCK6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7FYD9_F7FYD9_MACMU_9544 and tr_A0A096MTG9_A0A096MTG9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7FYD9_F7FYD9_MACMU_9544 and tr_A0A0D9RMC7_A0A0D9RMC7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7FYD9_F7FYD9_MACMU_9544 and tr_A0A2K5NQ26_A0A2K5NQ26_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7FYD9_F7FYD9_MACMU_9544 and tr_A0A2K6E325_A0A2K6E325_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FYD9_F7FYD9_MACMU_9544 and tr_A0A2K5ZEM7_A0A2K5ZEM7_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7GVP5_F7GVP5_MACMU_9544 and tr_A0A2K6C1R9_A0A2K6C1R9_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_G7P687_G7P687_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_A0A096NYI5_A0A096NYI5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_A0A0D9S0M9_A0A0D9S0M9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_A0A2K5MH73_A0A2K5MH73_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_A0A2K6D9V0_A0A2K6D9V0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_A0A2K5YBY3_A0A2K5YBY3_MANLE_9568 are exactly identical! WARNING: Sequences tr_U3IU51_U3IU51_ANAPL_8839 and tr_A0A091WNE0_A0A091WNE0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A151NA15_A0A151NA15_ALLMI_8496 and tr_A0A3Q0FMK3_A0A3Q0FMK3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091ELA6_A0A091ELA6_CORBR_85066 and tr_A0A218VE59_A0A218VE59_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A091UVR5_A0A091UVR5_NIPNI_128390 and tr_A0A087RCK2_A0A087RCK2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091UVR5_A0A091UVR5_NIPNI_128390 and tr_A0A0A0AS26_A0A0A0AS26_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091VSL6_A0A091VSL6_OPIHO_30419 and tr_A0A2I0MGU1_A0A2I0MGU1_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A099ZVA7_A0A099ZVA7_CHAVO_50402 and tr_A0A093IB22_A0A093IB22_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A099ZVA7_A0A099ZVA7_CHAVO_50402 and tr_A0A1V4JUH8_A0A1V4JUH8_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A226NG00_A0A226NG00_CALSU_9009 and tr_A0A226PMU1_A0A226PMU1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U4AR11_A0A2U4AR11_TURTR_9739 and tr_A0A2Y9SGR1_A0A2Y9SGR1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4B9V8_A0A2U4B9V8_TURTR_9739 and tr_A0A2Y9MJZ7_A0A2Y9MJZ7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B9V8_A0A2U4B9V8_TURTR_9739 and tr_A0A2Y9EGI9_A0A2Y9EGI9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3WK18_A0A2U3WK18_ODORO_9708 and tr_A0A2U3YM41_A0A2U3YM41_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9F066_A0A2Y9F066_PHYCD_9755 and tr_A0A383ZBC3_A0A383ZBC3_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 87 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NHY2/4_raxmlng_ancestral/A6NHY2.raxml.reduced.phy Alignment comprises 1 partitions and 528 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 528 Gaps: 25.67 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NHY2/4_raxmlng_ancestral/A6NHY2.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NHY2/3_mltree/A6NHY2.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 132 / 10560 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -291772.877066 [00:00:00 -291772.877066] Initial branch length optimization [00:00:01 -289860.934392] Model parameter optimization (eps = 0.100000) [00:00:13] Tree #1, final logLikelihood: -289737.897104 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.057850,0.099710) (0.129179,0.347100) (0.458754,0.728052) (0.354216,1.737347) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NHY2/4_raxmlng_ancestral/A6NHY2.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NHY2/4_raxmlng_ancestral/A6NHY2.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NHY2/4_raxmlng_ancestral/A6NHY2.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A6NHY2/4_raxmlng_ancestral/A6NHY2.raxml.log Analysis started: 12-Jul-2021 17:43:27 / finished: 12-Jul-2021 17:43:45 Elapsed time: 17.925 seconds Consumed energy: 0.697 Wh