RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 08-Jul-2021 21:14:46 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NH57/2_msa/A6NH57_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NH57/3_mltree/A6NH57 --seed 2 --threads 4 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NH57/2_msa/A6NH57_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 179 sites

WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_W5JDH6_W5JDH6_ANODA_43151 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and sp_P61209_ARF1_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_B4J3R8_B4J3R8_DROGR_7222 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_B4IB53_B4IB53_DROSE_7238 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_Q2M0P5_Q2M0P5_DROPS_46245 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_B0WAT5_B0WAT5_CULQU_7176 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_Q7PZP1_Q7PZP1_ANOGA_7165 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_B4N532_B4N532_DROWI_7260 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_B3MB97_B3MB97_DROAN_7217 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_B4GRC0_B4GRC0_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_B4LDP7_B4LDP7_DROVI_7244 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_Q1HR73_Q1HR73_AEDAE_7159 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_B4KYK8_B4KYK8_DROMO_7230 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_A0A067RH94_A0A067RH94_ZOONE_136037 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_A0A084VKX8_A0A084VKX8_ANOSI_74873 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_A0A0L0CRL9_A0A0L0CRL9_LUCCU_7375 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_A0A0M5J8G9_A0A0M5J8G9_DROBS_30019 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_A0A1W4USS4_A0A1W4USS4_DROFC_30025 are exactly identical!
WARNING: Sequences tr_B4QLB5_B4QLB5_DROSI_7240 and tr_A0A2J7PTR4_A0A2J7PTR4_9NEOP_105785 are exactly identical!
WARNING: Sequences tr_B4QLL6_B4QLL6_DROSI_7240 and tr_Q9VSG8_Q9VSG8_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QLL6_B4QLL6_DROSI_7240 and tr_B4HJF7_B4HJF7_DROSE_7238 are exactly identical!
WARNING: Sequences tr_B4QLL6_B4QLL6_DROSI_7240 and tr_Q29F85_Q29F85_DROPS_46245 are exactly identical!
WARNING: Sequences tr_B4QLL6_B4QLL6_DROSI_7240 and tr_B4H156_B4H156_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B4QLL6_B4QLL6_DROSI_7240 and tr_A0A1W4US96_A0A1W4US96_DROFC_30025 are exactly identical!
WARNING: Sequences tr_E9H3D5_E9H3D5_DAPPU_6669 and tr_A0A0P5SFB8_A0A0P5SFB8_9CRUS_35525 are exactly identical!
WARNING: Sequences tr_Q6DHP3_Q6DHP3_DANRE_7955 and tr_G3P390_G3P390_GASAC_69293 are exactly identical!
WARNING: Sequences tr_Q6NYD8_Q6NYD8_DANRE_7955 and tr_A0A3B1JYR7_A0A3B1JYR7_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_Q6NYD8_Q6NYD8_DANRE_7955 and tr_W5ULP5_W5ULP5_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_Q803D1_Q803D1_DANRE_7955 and tr_A0A3B1IWJ5_A0A3B1IWJ5_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and sp_P84078_ARF1_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_M3XPF6_M3XPF6_MUSPF_9669 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_G1RVH9_G1RVH9_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_G1P8C2_G1P8C2_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_G3R6M1_G3R6M1_GORGO_9595 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A2J8U1W3_A0A2J8U1W3_PONAB_9601 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_G1MUL7_G1MUL7_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_G1KFW9_G1KFW9_ANOCA_28377 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_G1TXQ6_G1TXQ6_RABIT_9986 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_G2HIU2_G2HIU2_PANTR_9598 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_C5IWU0_C5IWU0_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and sp_P84079_ARF1_RAT_10116 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_I3MD93_I3MD93_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_H0X3U3_H0X3U3_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A286XSP4_A0A286XSP4_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and sp_P84077_ARF1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_K7FRY7_K7FRY7_PELSI_13735 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_G3SZ91_G3SZ91_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_G3WP22_G3WP22_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_H0YPN5_H0YPN5_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_D2I2D2_D2I2D2_AILME_9646 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and sp_P84080_ARF1_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_L5JY93_L5JY93_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_M3X7Y7_M3X7Y7_FELCA_9685 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_U3JEC5_U3JEC5_FICAL_59894 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_U3I9V5_U3I9V5_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A096NAX4_A0A096NAX4_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A091CPS3_A0A091CPS3_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A0D9RV83_A0A0D9RV83_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A0Q3PXP6_A0A0Q3PXP6_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A099ZN90_A0A099ZN90_TINGU_94827 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A1S3WRC0_A0A1S3WRC0_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A1S3F4I3_A0A1S3F4I3_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A1U7TPQ8_A0A1U7TPQ8_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A1U7RVT9_A0A1U7RVT9_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A1U8BIF2_A0A1U8BIF2_MESAU_10036 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A218UG80_A0A218UG80_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A2K5M6P1_A0A2K5M6P1_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A2K6CVZ0_A0A2K6CVZ0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A2K5ZWN9_A0A2K5ZWN9_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A2R9ABQ8_A0A2R9ABQ8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A2U3WES8_A0A2U3WES8_ODORO_9708 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A2U3YIP9_A0A2U3YIP9_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A2Y9E0H0_A0A2Y9E0H0_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A2Y9IFB4_A0A2Y9IFB4_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A2Y9MA88_A0A2Y9MA88_DELLE_9749 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A384DHP2_A0A384DHP2_URSMA_29073 are exactly identical!
WARNING: Sequences tr_F1NN08_F1NN08_CHICK_9031 and tr_A0A383Z4H9_A0A383Z4H9_BALAS_310752 are exactly identical!
WARNING: Sequences tr_Q6IMM3_Q6IMM3_LEIMA_5664 and tr_E9AHL7_E9AHL7_LEIIN_5671 are exactly identical!
WARNING: Sequences tr_Q5AND9_Q5AND9_CANAL_237561 and tr_A5DZR1_A5DZR1_LODEL_379508 are exactly identical!
WARNING: Sequences tr_Q5AND9_Q5AND9_CANAL_237561 and tr_C5MA28_C5MA28_CANTT_294747 are exactly identical!
WARNING: Sequences tr_Q5AND9_Q5AND9_CANAL_237561 and tr_M3K348_M3K348_CANMX_1245528 are exactly identical!
WARNING: Sequences tr_Q5AND9_Q5AND9_CANAL_237561 and tr_A0A367YFD7_A0A367YFD7_9ASCO_5486 are exactly identical!
WARNING: Sequences sp_Q8BSL7_ARF2_MOUSE_10090 and tr_F6XLZ5_F6XLZ5_HORSE_9796 are exactly identical!
WARNING: Sequences sp_Q8BSL7_ARF2_MOUSE_10090 and sp_P84082_ARF2_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q8BSL7_ARF2_MOUSE_10090 and tr_I3N808_I3N808_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q8BSL7_ARF2_MOUSE_10090 and tr_G3UFR2_G3UFR2_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_Q8BSL7_ARF2_MOUSE_10090 and tr_A0A287BM57_A0A287BM57_PIG_9823 are exactly identical!
WARNING: Sequences sp_Q8BSL7_ARF2_MOUSE_10090 and sp_P84081_ARF2_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_Q8BSL7_ARF2_MOUSE_10090 and tr_A0A2I2UWZ8_A0A2I2UWZ8_FELCA_9685 are exactly identical!
WARNING: Sequences sp_Q8BSL7_ARF2_MOUSE_10090 and tr_A0A1S3A5H3_A0A1S3A5H3_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_Q8BSL7_ARF2_MOUSE_10090 and tr_A0A1U7QDL6_A0A1U7QDL6_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q8BSL7_ARF2_MOUSE_10090 and tr_A0A2Y9R0H6_A0A2Y9R0H6_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_Q8BSL7_ARF2_MOUSE_10090 and tr_A0A383ZM08_A0A383ZM08_BALAS_310752 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_M3YKF9_M3YKF9_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A2I3HAW1_A0A2I3HAW1_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_G1T8A1_G1T8A1_RABIT_9986 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_E2RIG8_E2RIG8_CANLF_9615 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_H2Q1P8_H2Q1P8_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_W5Q8R8_W5Q8R8_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_I3NF17_I3NF17_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and sp_Q96KC2_ARL5B_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_F6SWA4_F6SWA4_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_G3SNM8_G3SNM8_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A2R8M5K7_A0A2R8M5K7_CALJA_9483 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A286ZX20_A0A286ZX20_PIG_9823 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_E1BPV3_E1BPV3_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_M3WMQ6_M3WMQ6_FELCA_9685 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A096P3N4_A0A096P3N4_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A0D9RJG2_A0A0D9RJG2_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A1S2ZXZ7_A0A1S2ZXZ7_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A1U7QXN9_A0A1U7QXN9_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A2K5LUZ0_A0A2K5LUZ0_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A2K6AQJ4_A0A2K6AQJ4_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A2K5Y6N4_A0A2K5Y6N4_MANLE_9568 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A2R8ZEY7_A0A2R8ZEY7_PANPA_9597 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A2U3V1L5_A0A2U3V1L5_TURTR_9739 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A2Y9DSY8_A0A2Y9DSY8_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A2Y9KEG8_A0A2Y9KEG8_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A2Y9NQA5_A0A2Y9NQA5_DELLE_9749 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A2Y9F0T3_A0A2Y9F0T3_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A384C628_A0A384C628_URSMA_29073 are exactly identical!
WARNING: Sequences sp_Q9D4P0_ARL5B_MOUSE_10090 and tr_A0A384ARG7_A0A384ARG7_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_G3RTY5_G3RTY5_GORGO_9595 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_H2R0M4_H2R0M4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_F7CEL2_F7CEL2_HORSE_9796 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_H0X4S6_H0X4S6_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and sp_Q9Y689_ARL5A_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_F7FTL5_F7FTL5_CALJA_9483 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_A0A287A3R6_A0A287A3R6_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_G1LQ72_G1LQ72_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_G7PKK8_G7PKK8_MACFA_9541 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_M3WL92_M3WL92_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_A0A096MVQ0_A0A096MVQ0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_A0A1U7UTR7_A0A1U7UTR7_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_A0A2K5LCV3_A0A2K5LCV3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_A0A2K6CHS4_A0A2K6CHS4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_A0A2R9AT82_A0A2R9AT82_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_A0A2U3X085_A0A2U3X085_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3XMU4_M3XMU4_MUSPF_9669 and tr_A0A2Y9L6M8_A0A2Y9L6M8_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YA06_M3YA06_MUSPF_9669 and tr_J9NWP6_J9NWP6_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3YA06_M3YA06_MUSPF_9669 and tr_G1LBZ4_G1LBZ4_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YA06_M3YA06_MUSPF_9669 and tr_A0A2U4C3H6_A0A2U4C3H6_TURTR_9739 are exactly identical!
WARNING: Sequences tr_M3YA06_M3YA06_MUSPF_9669 and tr_A0A2U3WPZ8_A0A2U3WPZ8_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3YA06_M3YA06_MUSPF_9669 and tr_A0A2U3YJG8_A0A2U3YJG8_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3YA06_M3YA06_MUSPF_9669 and tr_A0A2Y9KNT7_A0A2Y9KNT7_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YA06_M3YA06_MUSPF_9669 and tr_A0A2Y9FKM5_A0A2Y9FKM5_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_M3YA06_M3YA06_MUSPF_9669 and tr_A0A384CBH3_A0A384CBH3_URSMA_29073 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_K4AFP6_K4AFP6_SETIT_4555 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_J3LU25_J3LU25_ORYBR_4533 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_A0A0E0GVG8_A0A0E0GVG8_ORYNI_4536 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_I1PGN1_I1PGN1_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_A0A0E0D8M8_A0A0E0D8M8_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_A0A0E0P2Z1_A0A0E0P2Z1_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_I1GLR0_I1GLR0_BRADI_15368 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_A0A3B6KSP3_A0A3B6KSP3_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_A0A3B6N1W7_A0A3B6N1W7_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_A0A0D3FQJ5_A0A0D3FQJ5_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_A0A0D9ZEV3_A0A0D9ZEV3_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_A0A0E0KKM1_A0A0E0KKM1_ORYPU_4537 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_A0A0D9W0L9_A0A0D9W0L9_9ORYZ_77586 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_Q7XZG0_Q7XZG0_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_C5WVZ4_C5WVZ4_SORBI_4558 and tr_A0A2T7BZA2_A0A2T7BZA2_9POAL_1504633 are exactly identical!
WARNING: Sequences tr_C5XDD0_C5XDD0_SORBI_4558 and tr_K3ZXA4_K3ZXA4_SETIT_4555 are exactly identical!
WARNING: Sequences tr_C5XDD0_C5XDD0_SORBI_4558 and tr_J3MJH3_J3MJH3_ORYBR_4533 are exactly identical!
WARNING: Sequences tr_C5XDD0_C5XDD0_SORBI_4558 and tr_B8B8G5_B8B8G5_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_C5XDD0_C5XDD0_SORBI_4558 and tr_A0A0Q3HBQ3_A0A0Q3HBQ3_BRADI_15368 are exactly identical!
WARNING: Sequences tr_C5XDD0_C5XDD0_SORBI_4558 and tr_Q7F270_Q7F270_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_C5XDD0_C5XDD0_SORBI_4558 and tr_A0A2T7EMV3_A0A2T7EMV3_9POAL_1504633 are exactly identical!
WARNING: Sequences tr_A0A3B3HR06_A0A3B3HR06_ORYLA_8090 and tr_M4AR81_M4AR81_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B3HR06_A0A3B3HR06_ORYLA_8090 and tr_I3KNX7_I3KNX7_ORENI_8128 are exactly identical!
WARNING: Sequences tr_A0A3B3HR06_A0A3B3HR06_ORYLA_8090 and tr_A0A087Y5Q1_A0A087Y5Q1_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B3HR06_A0A3B3HR06_ORYLA_8090 and tr_A0A2I4BRA6_A0A2I4BRA6_9TELE_52670 are exactly identical!
WARNING: Sequences tr_B4J200_B4J200_DROGR_7222 and tr_B4LC98_B4LC98_DROVI_7244 are exactly identical!
WARNING: Sequences tr_B0CXV1_B0CXV1_LACBS_486041 and tr_A0A067NR30_A0A067NR30_PLEOS_1137138 are exactly identical!
WARNING: Sequences tr_B0CXV1_B0CXV1_LACBS_486041 and tr_A0A067TNS6_A0A067TNS6_GALM3_685588 are exactly identical!
WARNING: Sequences tr_B0CXV1_B0CXV1_LACBS_486041 and tr_A0A0C3CQI9_A0A0C3CQI9_HEBCY_686832 are exactly identical!
WARNING: Sequences tr_B0CXV1_B0CXV1_LACBS_486041 and tr_A0A0C9Y9E9_A0A0C9Y9E9_9AGAR_1095629 are exactly identical!
WARNING: Sequences tr_B6QR59_B6QR59_TALMQ_441960 and tr_A0A093XR50_A0A093XR50_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_H2P7J7_H2P7J7_PONAB_9601 and tr_F6SU02_F6SU02_MONDO_13616 are exactly identical!
WARNING: Sequences tr_H2P7J7_H2P7J7_PONAB_9601 and sp_P51646_ARL5A_RAT_10116 are exactly identical!
WARNING: Sequences tr_H2P7J7_H2P7J7_PONAB_9601 and tr_G3UK48_G3UK48_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_H2P7J7_H2P7J7_PONAB_9601 and tr_G3X3D2_G3X3D2_SARHA_9305 are exactly identical!
WARNING: Sequences tr_C1G6M8_C1G6M8_PARBD_502780 and tr_C1H9X3_C1H9X3_PARBA_502779 are exactly identical!
WARNING: Sequences sp_Q7RVM2_ARF_NEUCR_367110 and tr_F7VRB0_F7VRB0_SORMK_771870 are exactly identical!
WARNING: Sequences sp_Q7RVM2_ARF_NEUCR_367110 and tr_G4U578_G4U578_NEUT9_510952 are exactly identical!
WARNING: Sequences tr_A0A179U6N6_A0A179U6N6_BLAGS_559298 and tr_C5GW64_C5GW64_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_A0A179U6N6_A0A179U6N6_BLAGS_559298 and tr_C6HCQ5_C6HCQ5_AJECH_544712 are exactly identical!
WARNING: Sequences tr_A0A179U6N6_A0A179U6N6_BLAGS_559298 and tr_F0UCX9_F0UCX9_AJEC8_544711 are exactly identical!
WARNING: Sequences tr_A0A179U6N6_A0A179U6N6_BLAGS_559298 and tr_A0A1J9PC07_A0A1J9PC07_9EURO_1447872 are exactly identical!
WARNING: Sequences tr_A0A179U6N6_A0A179U6N6_BLAGS_559298 and tr_A0A2B7XFR4_A0A2B7XFR4_9EURO_2060905 are exactly identical!
WARNING: Sequences tr_A0A179U6N6_A0A179U6N6_BLAGS_559298 and tr_A0A1J9R1P5_A0A1J9R1P5_9EURO_1658174 are exactly identical!
WARNING: Sequences sp_P0CM16_ARF_CRYNJ_214684 and tr_E6R981_E6R981_CRYGW_367775 are exactly identical!
WARNING: Sequences sp_P0CM16_ARF_CRYNJ_214684 and tr_A0A095C7L0_A0A095C7L0_CRYGR_294750 are exactly identical!
WARNING: Sequences tr_A3LZR8_A3LZR8_PICST_322104 and tr_A0A1E4SC31_A0A1E4SC31_9ASCO_984487 are exactly identical!
WARNING: Sequences tr_A0A2I3TPW5_A0A2I3TPW5_PANTR_9598 and tr_A0A2R9AAE9_A0A2R9AAE9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_Q4CQM4_Q4CQM4_TRYCC_353153 and tr_Q4D7Y8_Q4D7Y8_TRYCC_353153 are exactly identical!
WARNING: Sequences tr_B0XJN1_B0XJN1_CULQU_7176 and tr_Q16I84_Q16I84_AEDAE_7159 are exactly identical!
WARNING: Sequences tr_K7JAH0_K7JAH0_NASVI_7425 and tr_A0A088A5A6_A0A088A5A6_APIME_7460 are exactly identical!
WARNING: Sequences tr_K7JAH0_K7JAH0_NASVI_7425 and tr_A0A158NVW7_A0A158NVW7_ATTCE_12957 are exactly identical!
WARNING: Sequences tr_K7JAH0_K7JAH0_NASVI_7425 and tr_F4X4X0_F4X4X0_ACREC_103372 are exactly identical!
WARNING: Sequences tr_K7JAH0_K7JAH0_NASVI_7425 and tr_E2BY37_E2BY37_HARSA_610380 are exactly identical!
WARNING: Sequences tr_K7JAH0_K7JAH0_NASVI_7425 and tr_A0A026X2R5_A0A026X2R5_OOCBI_2015173 are exactly identical!
WARNING: Sequences tr_K7JAH0_K7JAH0_NASVI_7425 and tr_A0A0N0BL06_A0A0N0BL06_9HYME_166423 are exactly identical!
WARNING: Sequences tr_K7JAH0_K7JAH0_NASVI_7425 and tr_A0A195ET79_A0A195ET79_9HYME_34720 are exactly identical!
WARNING: Sequences tr_K7JAH0_K7JAH0_NASVI_7425 and tr_A0A2A3ETJ6_A0A2A3ETJ6_APICC_94128 are exactly identical!
WARNING: Sequences tr_M3ZJA5_M3ZJA5_XIPMA_8083 and tr_A0A087YF95_A0A087YF95_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M3ZUA3_M3ZUA3_XIPMA_8083 and tr_A0A087Y3P0_A0A087Y3P0_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M4A420_M4A420_XIPMA_8083 and tr_A0A087Y9W6_A0A087Y9W6_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A088AKA9_A0A088AKA9_APIME_7460 and tr_A0A2A3ELK2_A0A2A3ELK2_APICC_94128 are exactly identical!
WARNING: Sequences tr_Q2F6C7_Q2F6C7_BOMMO_7091 and tr_A0A194QSJ4_A0A194QSJ4_PAPMA_76193 are exactly identical!
WARNING: Sequences tr_Q2F6C7_Q2F6C7_BOMMO_7091 and tr_I4DIZ6_I4DIZ6_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A158NK92_A0A158NK92_ATTCE_12957 and tr_F4W8J0_F4W8J0_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A158NK92_A0A158NK92_ATTCE_12957 and tr_A0A195BAV4_A0A195BAV4_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A3B5KBQ7_A0A3B5KBQ7_TAKRU_31033 and tr_H3CJZ6_H3CJZ6_TETNG_99883 are exactly identical!
WARNING: Sequences tr_J3N994_J3N994_ORYBR_4533 and tr_A0A0E0J3N2_A0A0E0J3N2_ORYNI_4536 are exactly identical!
WARNING: Sequences tr_J3N994_J3N994_ORYBR_4533 and tr_B8BLE7_B8BLE7_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_J3N994_J3N994_ORYBR_4533 and tr_A0A0E0F744_A0A0E0F744_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_J3N994_J3N994_ORYBR_4533 and tr_A0A0E0RA95_A0A0E0RA95_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_J3N994_J3N994_ORYBR_4533 and tr_A0A0E0BKP7_A0A0E0BKP7_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_J3N994_J3N994_ORYBR_4533 and tr_Q2R1Y6_Q2R1Y6_ORYSJ_39947 are exactly identical!
WARNING: Sequences sp_P0DH91_ARF2B_ARATH_3702 and sp_Q9LQC8_ARF2A_ARATH_3702 are exactly identical!
WARNING: Sequences sp_P0DH91_ARF2B_ARATH_3702 and tr_D7KNG1_D7KNG1_ARALL_81972 are exactly identical!
WARNING: Sequences sp_P0DH91_ARF2B_ARATH_3702 and tr_D7KY32_D7KY32_ARALL_81972 are exactly identical!
WARNING: Sequences sp_P0DH91_ARF2B_ARATH_3702 and tr_M4D7B6_M4D7B6_BRARP_51351 are exactly identical!
WARNING: Sequences sp_P0DH91_ARF2B_ARATH_3702 and tr_A0A078FHQ2_A0A078FHQ2_BRANA_3708 are exactly identical!
WARNING: Sequences sp_P0DH91_ARF2B_ARATH_3702 and tr_A0A078IAF3_A0A078IAF3_BRANA_3708 are exactly identical!
WARNING: Sequences sp_P0DH91_ARF2B_ARATH_3702 and tr_A0A0D3APM3_A0A0D3APM3_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_Q9LIK1_Q9LIK1_ARATH_3702 and tr_D7MXG7_D7MXG7_ARALL_81972 are exactly identical!
WARNING: Sequences tr_F7B1S9_F7B1S9_MACMU_9544 and tr_A0A384BRK2_A0A384BRK2_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G5BMY7_G5BMY7_HETGA_10181 and tr_A0A091D9E1_A0A091D9E1_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G5BMY7_G5BMY7_HETGA_10181 and tr_A0A1U7RNY3_A0A1U7RNY3_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_E5SAA3_E5SAA3_TRISP_6334 and tr_A0A0V0SAZ8_A0A0V0SAZ8_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5SAA3_E5SAA3_TRISP_6334 and tr_A0A0V1JG85_A0A0V1JG85_TRIPS_6337 are exactly identical!
WARNING: Sequences tr_E5SAA3_E5SAA3_TRISP_6334 and tr_A0A0V1N7Q4_A0A0V1N7Q4_9BILA_268474 are exactly identical!
WARNING: Sequences tr_E5SAA3_E5SAA3_TRISP_6334 and tr_A0A0V1PMX5_A0A0V1PMX5_9BILA_92180 are exactly identical!
WARNING: Sequences tr_G3NJ10_G3NJ10_GASAC_69293 and tr_A0A2U9CWN7_A0A2U9CWN7_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_C4XYJ0_C4XYJ0_CLAL4_306902 and tr_A0A1L0E1M1_A0A1L0E1M1_9ASCO_45354 are exactly identical!
WARNING: Sequences tr_C4Y178_C4Y178_CLAL4_306902 and tr_A0A1L0DDG7_A0A1L0DDG7_9ASCO_45354 are exactly identical!
WARNING: Sequences tr_H0ZPB0_H0ZPB0_TAEGU_59729 and tr_A0A2I0MG38_A0A2I0MG38_COLLI_8932 are exactly identical!
WARNING: Sequences tr_H0ZPB0_H0ZPB0_TAEGU_59729 and tr_A0A1V4K5J4_A0A1V4K5J4_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A0E0C0D3_A0A0E0C0D3_9ORYZ_40149 and tr_A0A0E0MUB5_A0A0E0MUB5_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0C0D3_A0A0E0C0D3_9ORYZ_40149 and tr_A0A0D9Y6G4_A0A0D9Y6G4_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0C0D3_A0A0E0C0D3_9ORYZ_40149 and tr_Q9LDC9_Q9LDC9_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_Q6NT85_Q6NT85_XENTR_8364 and tr_Q8AVF6_Q8AVF6_XENLA_8355 are exactly identical!
WARNING: Sequences tr_E3LYX2_E3LYX2_CAERE_31234 and sp_Q61LA8_ARF12_CAEBR_6238 are exactly identical!
WARNING: Sequences tr_E3LYX2_E3LYX2_CAERE_31234 and tr_A0A2G5US06_A0A2G5US06_9PELO_1611254 are exactly identical!
WARNING: Sequences tr_D7KLG4_D7KLG4_ARALL_81972 and tr_A0A061F3W8_A0A061F3W8_THECC_3641 are exactly identical!
WARNING: Sequences tr_D7KLG4_D7KLG4_ARALL_81972 and tr_A0A0D2RN97_A0A0D2RN97_GOSRA_29730 are exactly identical!
WARNING: Sequences tr_D7KLG4_D7KLG4_ARALL_81972 and tr_A0A1U8HPF7_A0A1U8HPF7_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_D7KLG4_D7KLG4_ARALL_81972 and tr_A0A1U8JVI2_A0A1U8JVI2_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_D7KLG4_D7KLG4_ARALL_81972 and tr_Q8W4Z3_Q8W4Z3_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0Q3JRI4_A0A0Q3JRI4_BRADI_15368 and tr_A0A3B6AWA1_A0A3B6AWA1_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_F2SZL5_F2SZL5_TRIRC_559305 and tr_A0A178F4J7_A0A178F4J7_TRIRU_5551 are exactly identical!
WARNING: Sequences tr_G4MSB4_G4MSB4_MAGO7_242507 and tr_W3XNX5_W3XNX5_PESFW_1229662 are exactly identical!
WARNING: Sequences tr_F2PMQ0_F2PMQ0_TRIEC_559882 and tr_A0A059J166_A0A059J166_9EURO_1215338 are exactly identical!
WARNING: Sequences tr_K0KES7_K0KES7_WICCF_1206466 and tr_A0A1E3P138_A0A1E3P138_WICAA_683960 are exactly identical!
WARNING: Sequences tr_L8FLD8_L8FLD8_PSED2_658429 and tr_A0A094ESB8_A0A094ESB8_9PEZI_1420912 are exactly identical!
WARNING: Sequences tr_L8FLD8_L8FLD8_PSED2_658429 and tr_A0A1B8E956_A0A1B8E956_9PEZI_1524831 are exactly identical!
WARNING: Sequences tr_L8FLD8_L8FLD8_PSED2_658429 and tr_A0A2P2SY07_A0A2P2SY07_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_L8FLD8_L8FLD8_PSED2_658429 and tr_A0A1B8CM33_A0A1B8CM33_9PEZI_1622147 are exactly identical!
WARNING: Sequences tr_L8FLD8_L8FLD8_PSED2_658429 and tr_A0A1B8F6K9_A0A1B8F6K9_9PEZI_1622149 are exactly identical!
WARNING: Sequences tr_M4EEE1_M4EEE1_BRARP_51351 and tr_A0A078IBK6_A0A078IBK6_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4EEE1_M4EEE1_BRARP_51351 and tr_A0A078IPS8_A0A078IPS8_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4EEE1_M4EEE1_BRARP_51351 and tr_A0A0D3E5C1_A0A0D3E5C1_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_M4F718_M4F718_BRARP_51351 and tr_A0A078GW57_A0A078GW57_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4FF53_M4FF53_BRARP_51351 and tr_A0A078IUP2_A0A078IUP2_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M0S750_M0S750_MUSAM_214687 and tr_A0A0D2TJG9_A0A0D2TJG9_GOSRA_29730 are exactly identical!
WARNING: Sequences tr_M0S750_M0S750_MUSAM_214687 and tr_A0A1U8PK03_A0A1U8PK03_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_S2JMQ0_S2JMQ0_MUCC1_1220926 and tr_A0A0C9MMV9_A0A0C9MMV9_9FUNG_91626 are exactly identical!
WARNING: Sequences tr_S2JMQ0_S2JMQ0_MUCC1_1220926 and tr_A0A168M996_A0A168M996_MUCCL_747725 are exactly identical!
WARNING: Sequences tr_S2JT70_S2JT70_MUCC1_1220926 and tr_A0A0C9MQ62_A0A0C9MQ62_9FUNG_91626 are exactly identical!
WARNING: Sequences tr_S2JT70_S2JT70_MUCC1_1220926 and tr_A0A168KPD4_A0A168KPD4_MUCCL_747725 are exactly identical!
WARNING: Sequences tr_U3KHK4_U3KHK4_FICAL_59894 and tr_A0A091K7K2_A0A091K7K2_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_U3KHK4_U3KHK4_FICAL_59894 and tr_A0A093S405_A0A093S405_9PASS_328815 are exactly identical!
WARNING: Sequences tr_U3KHK4_U3KHK4_FICAL_59894 and tr_A0A091V167_A0A091V167_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_U3KHK4_U3KHK4_FICAL_59894 and tr_A0A087QQ70_A0A087QQ70_APTFO_9233 are exactly identical!
WARNING: Sequences tr_U3KHK4_U3KHK4_FICAL_59894 and tr_A0A093H4W5_A0A093H4W5_STRCA_441894 are exactly identical!
WARNING: Sequences tr_U3KHK4_U3KHK4_FICAL_59894 and tr_A0A091XHP9_A0A091XHP9_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_U3KHK4_U3KHK4_FICAL_59894 and tr_A0A091FVC4_A0A091FVC4_9AVES_55661 are exactly identical!
WARNING: Sequences tr_U3KHK4_U3KHK4_FICAL_59894 and tr_A0A0A0AEE7_A0A0A0AEE7_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_U3KHK4_U3KHK4_FICAL_59894 and tr_A0A093H5S8_A0A093H5S8_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_U3KHK4_U3KHK4_FICAL_59894 and tr_A0A091IKL5_A0A091IKL5_CALAN_9244 are exactly identical!
WARNING: Sequences tr_S3D549_S3D549_GLAL2_1116229 and tr_A0A0C3HFS0_A0A0C3HFS0_9PEZI_913774 are exactly identical!
WARNING: Sequences tr_S3D549_S3D549_GLAL2_1116229 and tr_A0A2J6SY19_A0A2J6SY19_9HELO_1095630 are exactly identical!
WARNING: Sequences tr_S3D549_S3D549_GLAL2_1116229 and tr_A0A2J6Q9L2_A0A2J6Q9L2_9HELO_1745343 are exactly identical!
WARNING: Sequences tr_S3D549_S3D549_GLAL2_1116229 and tr_A0A2J6SC56_A0A2J6SC56_9HELO_1149755 are exactly identical!
WARNING: Sequences tr_S3D549_S3D549_GLAL2_1116229 and tr_A0A2T3B2Z5_A0A2T3B2Z5_AMORE_857342 are exactly identical!
WARNING: Sequences tr_N1Q6H1_N1Q6H1_PSEFD_383855 and tr_A0A139HKG3_A0A139HKG3_9PEZI_321146 are exactly identical!
WARNING: Sequences tr_A0A015K1Q9_A0A015K1Q9_9GLOM_1432141 and tr_U9UF43_U9UF43_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A015KW34_A0A015KW34_9GLOM_1432141 and tr_A0A2I1GHW7_A0A2I1GHW7_9GLOM_588596 are exactly identical!
WARNING: Sequences tr_A0A015KW34_A0A015KW34_9GLOM_1432141 and tr_U9TYT9_U9TYT9_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A044V6Z9_A0A044V6Z9_ONCVO_6282 and tr_A0A0R3RVR4_A0A0R3RVR4_9BILA_1147741 are exactly identical!
WARNING: Sequences tr_A0A044V6Z9_A0A044V6Z9_ONCVO_6282 and tr_A0A1I7W5N9_A0A1I7W5N9_LOALO_7209 are exactly identical!
WARNING: Sequences tr_A0A016VZA6_A0A016VZA6_9BILA_53326 and tr_A0A0K0D1N2_A0A0K0D1N2_ANGCA_6313 are exactly identical!
WARNING: Sequences tr_A0A067EFU1_A0A067EFU1_CITSI_2711 and tr_A0A2H5PPN4_A0A2H5PPN4_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A078FP84_A0A078FP84_BRANA_3708 and tr_A0A0D3A877_A0A0D3A877_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A078HHK8_A0A078HHK8_BRANA_3708 and tr_A0A0D3DLU0_A0A0D3DLU0_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A0A0L5C3_A0A0A0L5C3_CUCSA_3659 and tr_A0A1S3AWS5_A0A1S3AWS5_CUCME_3656 are exactly identical!
WARNING: Sequences tr_A0A0K0F6H2_A0A0K0F6H2_STRVS_75913 and tr_A0A0N5CEG3_A0A0N5CEG3_STREA_174720 are exactly identical!
WARNING: Sequences tr_A0A0K0E284_A0A0K0E284_STRER_6248 and tr_A0A090MYD2_A0A090MYD2_STRRB_34506 are exactly identical!
WARNING: Sequences tr_A0A0K0E284_A0A0K0E284_STRER_6248 and tr_A0A0N5A248_A0A0N5A248_PARTI_131310 are exactly identical!
WARNING: Sequences tr_A0A0A1MH75_A0A0A1MH75_9FUNG_58291 and tr_A0A2G4TAD6_A0A2G4TAD6_9FUNG_1340429 are exactly identical!
WARNING: Sequences tr_A0A0A1MH75_A0A0A1MH75_9FUNG_58291 and tr_A0A367JWG2_A0A367JWG2_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A026X4K5_A0A026X4K5_OOCBI_2015173 and tr_A0A0L7R037_A0A0L7R037_9HYME_597456 are exactly identical!
WARNING: Sequences tr_A0A091IVU0_A0A091IVU0_EGRGA_188379 and tr_A0A091V2J1_A0A091V2J1_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091IVU0_A0A091IVU0_EGRGA_188379 and tr_A0A087QUB0_A0A087QUB0_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091IVU0_A0A091IVU0_EGRGA_188379 and tr_A0A099YR85_A0A099YR85_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A091IVU0_A0A091IVU0_EGRGA_188379 and tr_A0A0A0AM74_A0A0A0AM74_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A0L9TYD2_A0A0L9TYD2_PHAAN_3914 and tr_A0A1S3V208_A0A1S3V208_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A0D0A4G2_A0A0D0A4G2_9HOMO_765257 and tr_A0A0D0DX52_A0A0D0DX52_9HOMO_930991 are exactly identical!
WARNING: Sequences tr_A0A151X6Y3_A0A151X6Y3_9HYME_64791 and tr_A0A195FC89_A0A195FC89_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A177VYD3_A0A177VYD3_9BASI_13291 and tr_A0A177UY09_A0A177UY09_9BASI_117179 are exactly identical!
WARNING: Sequences tr_A0A1S3F1W1_A0A1S3F1W1_DIPOR_10020 and tr_A0A2U3VEF4_A0A2U3VEF4_ODORO_9708 are exactly identical!
WARNING: Sequences tr_A0A1S3Y7M0_A0A1S3Y7M0_TOBAC_4097 and tr_A0A1J6JVZ5_A0A1J6JVZ5_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S4B5L9_A0A1S4B5L9_TOBAC_4097 and tr_A0A1U7V5L2_A0A1U7V5L2_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3Q8I1_A0A1S3Q8I1_SALSA_8030 and tr_A0A060YG37_A0A060YG37_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3R4C1_A0A1S3R4C1_SALSA_8030 and tr_A0A060VQ64_A0A060VQ64_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3R7D7_A0A1S3R7D7_SALSA_8030 and tr_A0A060XH75_A0A060XH75_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_B5DG68_B5DG68_SALSA_8030 and tr_A0A060WIQ0_A0A060WIQ0_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_B5X122_B5X122_SALSA_8030 and tr_A0A060Y1I5_A0A060Y1I5_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_B5X3Q1_B5X3Q1_SALSA_8030 and tr_A0A060WWQ6_A0A060WWQ6_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_B9EL84_B9EL84_SALSA_8030 and tr_A0A060Y0I6_A0A060Y0I6_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1Y1VNK9_A0A1Y1VNK9_9FUNG_1754191 and tr_A0A1Y1X7I0_A0A1Y1X7I0_9FUNG_1754192 are exactly identical!
WARNING: Sequences tr_A0A225ALC0_A0A225ALC0_9EURO_1441469 and tr_A0A2H3I206_A0A2H3I206_9EURO_290292 are exactly identical!
WARNING: Sequences tr_A0A2H3E840_A0A2H3E840_ARMGA_47427 and tr_A0A2H3C381_A0A2H3C381_9AGAR_1076256 are exactly identical!
WARNING: Sequences tr_A0A2H3E840_A0A2H3E840_ARMGA_47427 and tr_A0A284QZ84_A0A284QZ84_9AGAR_47428 are exactly identical!
WARNING: Sequences tr_A0A2H0ZVY1_A0A2H0ZVY1_CANAR_498019 and tr_A0A2P7YKN8_A0A2P7YKN8_9ASCO_418784 are exactly identical!
WARNING: Sequences tr_A0A2H0ZVY1_A0A2H0ZVY1_CANAR_498019 and tr_A0A2V1AYT6_A0A2V1AYT6_9ASCO_45357 are exactly identical!
WARNING: Sequences tr_A0A2G5I8Z7_A0A2G5I8Z7_CERBT_122368 and tr_A0A2I0RU96_A0A2I0RU96_9PEZI_348901 are exactly identical!
WARNING: Sequences tr_A0A2P5FW93_A0A2P5FW93_TREOI_63057 and tr_A0A2P5E334_A0A2P5E334_PARAD_3476 are exactly identical!
WARNING: Sequences tr_A0A2G4SIV9_A0A2G4SIV9_9FUNG_1340429 and tr_A0A367K140_A0A367K140_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A2U3V294_A0A2U3V294_TURTR_9739 and tr_A0A2Y9N864_A0A2Y9N864_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U3V294_A0A2U3V294_TURTR_9739 and tr_A0A2Y9EUP5_A0A2Y9EUP5_PHYCD_9755 are exactly identical!
WARNING: Duplicate sequences found: 333

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NH57/3_mltree/A6NH57.raxml.reduced.phy

Alignment comprises 1 partitions and 179 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 179 / 179
Gaps: 1.30 %
Invariant sites: 1.68 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NH57/3_mltree/A6NH57.raxml.rba

Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 179 / 14320
[00:00:00] Data distribution: max. searches per worker: 5

Starting ML tree search with 20 distinct starting trees

[00:00:00 -210847.143491] Initial branch length optimization
[00:00:05 -164838.364246] Model parameter optimization (eps = 10.000000)
[00:00:51 -164630.728443] AUTODETECT spr round 1 (radius: 5)
[00:03:43 -99057.858008] AUTODETECT spr round 2 (radius: 10)
[00:06:29 -73152.816685] AUTODETECT spr round 3 (radius: 15)
[00:09:14 -58296.004380] AUTODETECT spr round 4 (radius: 20)
[00:12:22 -51354.019640] AUTODETECT spr round 5 (radius: 25)
[00:16:07 -47165.307445] SPR radius for FAST iterations: 25 (autodetect)
[00:16:07 -47165.307445] Model parameter optimization (eps = 3.000000)
[00:16:36 -47034.149574] FAST spr round 1 (radius: 25)
[00:19:26 -37627.377223] FAST spr round 2 (radius: 25)
[00:21:41 -34539.407024] FAST spr round 3 (radius: 25)
[00:23:44 -33542.812360] FAST spr round 4 (radius: 25)
[00:25:37 -33175.805848] FAST spr round 5 (radius: 25)
[00:27:24 -32973.961971] FAST spr round 6 (radius: 25)
[00:29:04 -32967.844790] FAST spr round 7 (radius: 25)
[00:30:43 -32967.844568] Model parameter optimization (eps = 1.000000)
[00:31:00 -32946.584145] SLOW spr round 1 (radius: 5)
[00:33:01 -32931.543525] SLOW spr round 2 (radius: 5)
[00:35:02 -32927.152348] SLOW spr round 3 (radius: 5)
[00:37:04 -32927.152134] SLOW spr round 4 (radius: 10)
[00:39:09 -32927.152124] SLOW spr round 5 (radius: 15)
[00:42:14 -32927.151993] SLOW spr round 6 (radius: 20)
[00:46:14 -32927.151990] SLOW spr round 7 (radius: 25)
[00:51:07 -32927.033859] SLOW spr round 8 (radius: 5)
[00:53:48 -32927.033855] SLOW spr round 9 (radius: 10)
[00:56:31 -32923.027193] SLOW spr round 10 (radius: 5)
[00:59:01 -32921.181997] SLOW spr round 11 (radius: 5)
[01:01:12 -32921.181637] SLOW spr round 12 (radius: 10)
[01:01:27] [worker #2] ML tree search #3, logLikelihood: -32957.886757
[01:03:24 -32921.181580] SLOW spr round 13 (radius: 15)
[01:06:20 -32921.181579] SLOW spr round 14 (radius: 20)
[01:10:23 -32921.181578] SLOW spr round 15 (radius: 25)
[01:15:07 -32921.181577] Model parameter optimization (eps = 0.100000)

[01:15:16] [worker #0] ML tree search #1, logLikelihood: -32920.958192

[01:15:17 -208458.221863] Initial branch length optimization
[01:15:20 -162837.208912] Model parameter optimization (eps = 10.000000)
[01:16:12 -162549.969706] AUTODETECT spr round 1 (radius: 5)
[01:19:04 -96791.949340] AUTODETECT spr round 2 (radius: 10)
[01:21:54 -71626.064369] AUTODETECT spr round 3 (radius: 15)
[01:24:49 -55150.705216] AUTODETECT spr round 4 (radius: 20)
[01:28:01 -45131.665007] AUTODETECT spr round 5 (radius: 25)
[01:31:50 -41685.734184] SPR radius for FAST iterations: 25 (autodetect)
[01:31:50 -41685.734184] Model parameter optimization (eps = 3.000000)
[01:32:17 -41577.445733] FAST spr round 1 (radius: 25)
[01:35:06 -33445.310994] FAST spr round 2 (radius: 25)
[01:37:10 -33008.399409] FAST spr round 3 (radius: 25)
[01:39:02 -32966.191652] FAST spr round 4 (radius: 25)
[01:40:46 -32964.850048] FAST spr round 5 (radius: 25)
[01:42:26 -32964.407194] FAST spr round 6 (radius: 25)
[01:42:58] [worker #3] ML tree search #4, logLikelihood: -32943.215612
[01:44:04 -32964.407096] Model parameter optimization (eps = 1.000000)
[01:44:21 -32949.265669] SLOW spr round 1 (radius: 5)
[01:46:21 -32943.027199] SLOW spr round 2 (radius: 5)
[01:48:19 -32942.683520] SLOW spr round 3 (radius: 5)
[01:50:15 -32942.683366] SLOW spr round 4 (radius: 10)
[01:52:24 -32941.868571] SLOW spr round 5 (radius: 5)
[01:54:57 -32941.868001] SLOW spr round 6 (radius: 10)
[01:57:20 -32937.597292] SLOW spr round 7 (radius: 5)
[01:59:50 -32932.224630] SLOW spr round 8 (radius: 5)
[02:02:01 -32932.224603] SLOW spr round 9 (radius: 10)
[02:04:13 -32932.224592] SLOW spr round 10 (radius: 15)
[02:07:30 -32932.224580] SLOW spr round 11 (radius: 20)
[02:11:52 -32932.224572] SLOW spr round 12 (radius: 25)
[02:17:03] [worker #2] ML tree search #7, logLikelihood: -32953.332889
[02:17:25 -32932.224565] Model parameter optimization (eps = 0.100000)

[02:17:32] [worker #0] ML tree search #5, logLikelihood: -32932.180506

[02:17:32 -211468.944688] Initial branch length optimization
[02:17:36 -164311.950528] Model parameter optimization (eps = 10.000000)
[02:18:26 -164103.767719] AUTODETECT spr round 1 (radius: 5)
[02:21:19 -98967.207885] AUTODETECT spr round 2 (radius: 10)
[02:23:12] [worker #1] ML tree search #2, logLikelihood: -32914.683960
[02:24:11 -70979.445872] AUTODETECT spr round 3 (radius: 15)
[02:27:11 -56503.984191] AUTODETECT spr round 4 (radius: 20)
[02:30:25 -48674.770668] AUTODETECT spr round 5 (radius: 25)
[02:33:57 -45442.567632] SPR radius for FAST iterations: 25 (autodetect)
[02:33:57 -45442.567632] Model parameter optimization (eps = 3.000000)
[02:34:39 -45280.833020] FAST spr round 1 (radius: 25)
[02:37:07] [worker #3] ML tree search #8, logLikelihood: -32931.639905
[02:37:43 -36196.647329] FAST spr round 2 (radius: 25)
[02:40:06 -33779.483928] FAST spr round 3 (radius: 25)
[02:42:10 -33034.478850] FAST spr round 4 (radius: 25)
[02:44:01 -32980.142618] FAST spr round 5 (radius: 25)
[02:45:45 -32979.768592] FAST spr round 6 (radius: 25)
[02:47:27 -32979.768499] Model parameter optimization (eps = 1.000000)
[02:47:46 -32971.271627] SLOW spr round 1 (radius: 5)
[02:49:49 -32962.437854] SLOW spr round 2 (radius: 5)
[02:51:53 -32960.937242] SLOW spr round 3 (radius: 5)
[02:53:52 -32960.936407] SLOW spr round 4 (radius: 10)
[02:56:00 -32957.911965] SLOW spr round 5 (radius: 5)
[02:58:35 -32957.706207] SLOW spr round 6 (radius: 5)
[03:00:50 -32957.706107] SLOW spr round 7 (radius: 10)
[03:03:03 -32957.706054] SLOW spr round 8 (radius: 15)
[03:06:11 -32949.652940] SLOW spr round 9 (radius: 5)
[03:08:54 -32931.853962] SLOW spr round 10 (radius: 5)
[03:11:15 -32931.338161] SLOW spr round 11 (radius: 5)
[03:13:16] [worker #1] ML tree search #6, logLikelihood: -34712.099976
[03:13:23 -32931.336835] SLOW spr round 12 (radius: 10)
[03:15:33 -32931.336751] SLOW spr round 13 (radius: 15)
[03:18:42 -32931.336721] SLOW spr round 14 (radius: 20)
[03:23:08 -32930.033227] SLOW spr round 15 (radius: 5)
[03:25:53 -32927.799421] SLOW spr round 16 (radius: 5)
[03:28:15 -32927.798545] SLOW spr round 17 (radius: 10)
[03:30:30 -32927.798247] SLOW spr round 18 (radius: 15)
[03:33:34 -32927.798106] SLOW spr round 19 (radius: 20)
[03:36:27] [worker #2] ML tree search #11, logLikelihood: -32943.010911
[03:37:58 -32927.798038] SLOW spr round 20 (radius: 25)
[03:43:12 -32927.324166] SLOW spr round 21 (radius: 5)
[03:45:56 -32927.324141] SLOW spr round 22 (radius: 10)
[03:48:34 -32927.324133] SLOW spr round 23 (radius: 15)
[03:51:31 -32927.324127] SLOW spr round 24 (radius: 20)
[03:55:59 -32927.324123] SLOW spr round 25 (radius: 25)
[04:01:10 -32927.324119] Model parameter optimization (eps = 0.100000)

[04:01:21] [worker #0] ML tree search #9, logLikelihood: -32927.119900

[04:01:21 -211602.014747] Initial branch length optimization
[04:01:26 -164729.749103] Model parameter optimization (eps = 10.000000)
[04:02:06 -164439.732497] AUTODETECT spr round 1 (radius: 5)
[04:05:01 -99083.916019] AUTODETECT spr round 2 (radius: 10)
[04:07:53 -69954.280402] AUTODETECT spr round 3 (radius: 15)
[04:10:44 -57176.334599] AUTODETECT spr round 4 (radius: 20)
[04:13:53 -48432.289475] AUTODETECT spr round 5 (radius: 25)
[04:17:14 -43210.981581] SPR radius for FAST iterations: 25 (autodetect)
[04:17:14 -43210.981581] Model parameter optimization (eps = 3.000000)
[04:17:41 -43064.030863] FAST spr round 1 (radius: 25)
[04:20:42 -34577.189614] FAST spr round 2 (radius: 25)
[04:22:58 -33433.696494] FAST spr round 3 (radius: 25)
[04:24:56 -33373.402351] FAST spr round 4 (radius: 25)
[04:26:48 -33369.745383] FAST spr round 5 (radius: 25)
[04:27:47] [worker #1] ML tree search #10, logLikelihood: -32956.533547
[04:28:31 -33368.540151] FAST spr round 6 (radius: 25)
[04:30:13 -33368.538178] Model parameter optimization (eps = 1.000000)
[04:30:35 -33355.674461] SLOW spr round 1 (radius: 5)
[04:32:40 -33346.866013] SLOW spr round 2 (radius: 5)
[04:34:46 -33344.684576] SLOW spr round 3 (radius: 5)
[04:36:50 -33343.448597] SLOW spr round 4 (radius: 5)
[04:38:53 -33343.368655] SLOW spr round 5 (radius: 10)
[04:39:36] [worker #3] ML tree search #12, logLikelihood: -32939.347397
[04:41:02 -33343.368636] SLOW spr round 6 (radius: 15)
[04:44:11 -33343.111384] SLOW spr round 7 (radius: 5)
[04:46:51 -33343.109581] SLOW spr round 8 (radius: 10)
[04:49:18 -33343.109524] SLOW spr round 9 (radius: 15)
[04:52:18 -33343.109513] SLOW spr round 10 (radius: 20)
[04:54:50] [worker #2] ML tree search #15, logLikelihood: -32920.974201
[04:56:22 -33338.529411] SLOW spr round 11 (radius: 5)
[04:59:05 -33338.526190] SLOW spr round 12 (radius: 10)
[05:01:38 -33337.676804] SLOW spr round 13 (radius: 5)
[05:04:10 -33337.600759] SLOW spr round 14 (radius: 10)
[05:06:30 -33337.599427] SLOW spr round 15 (radius: 15)
[05:09:32 -33336.746488] SLOW spr round 16 (radius: 5)
[05:12:13 -33336.746478] SLOW spr round 17 (radius: 10)
[05:14:40 -33336.746473] SLOW spr round 18 (radius: 15)
[05:17:39 -33336.746467] SLOW spr round 19 (radius: 20)
[05:21:41 -33336.746462] SLOW spr round 20 (radius: 25)
[05:26:02 -33336.746456] Model parameter optimization (eps = 0.100000)

[05:26:09] [worker #0] ML tree search #13, logLikelihood: -33336.648805

[05:26:10 -207716.621401] Initial branch length optimization
[05:26:15 -163019.649009] Model parameter optimization (eps = 10.000000)
[05:27:00 -162740.451541] AUTODETECT spr round 1 (radius: 5)
[05:29:50 -97600.079544] AUTODETECT spr round 2 (radius: 10)
[05:32:31 -68003.008930] AUTODETECT spr round 3 (radius: 15)
[05:35:22 -58297.957136] AUTODETECT spr round 4 (radius: 20)
[05:38:24 -53202.358307] AUTODETECT spr round 5 (radius: 25)
[05:40:34] [worker #1] ML tree search #14, logLikelihood: -32932.348477
[05:41:50 -47928.840718] SPR radius for FAST iterations: 25 (autodetect)
[05:41:50 -47928.840718] Model parameter optimization (eps = 3.000000)
[05:42:16 -47753.161957] FAST spr round 1 (radius: 25)
[05:43:19] [worker #2] ML tree search #19, logLikelihood: -32932.506456
[05:45:05 -35638.598402] FAST spr round 2 (radius: 25)
[05:47:15 -33789.299727] FAST spr round 3 (radius: 25)
[05:49:11 -33241.057928] FAST spr round 4 (radius: 25)
[05:49:31] [worker #3] ML tree search #16, logLikelihood: -32919.466212
[05:50:59 -32977.676549] FAST spr round 5 (radius: 25)
[05:52:46 -32944.209135] FAST spr round 6 (radius: 25)
[05:54:27 -32944.208710] Model parameter optimization (eps = 1.000000)
[05:54:44 -32931.246537] SLOW spr round 1 (radius: 5)
[05:56:45 -32929.605438] SLOW spr round 2 (radius: 5)
[05:58:43 -32928.136282] SLOW spr round 3 (radius: 5)
[06:00:40 -32928.136054] SLOW spr round 4 (radius: 10)
[06:02:46 -32928.136014] SLOW spr round 5 (radius: 15)
[06:05:53 -32928.135982] SLOW spr round 6 (radius: 20)
[06:09:57 -32928.135954] SLOW spr round 7 (radius: 25)
[06:14:27 -32928.099191] Model parameter optimization (eps = 0.100000)

[06:14:32] [worker #0] ML tree search #17, logLikelihood: -32928.097651

[06:58:31] [worker #1] ML tree search #18, logLikelihood: -32919.590389
[07:07:16] [worker #3] ML tree search #20, logLikelihood: -32935.917645

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.375164,0.473257) (0.286379,0.690161) (0.236971,1.473485) (0.101487,2.715929) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -32914.683960

AIC score: 69839.367920 / AICc score: 8113899.367920 / BIC score: 76230.076461
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=179).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NH57/3_mltree/A6NH57.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NH57/3_mltree/A6NH57.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NH57/3_mltree/A6NH57.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NH57/3_mltree/A6NH57.raxml.log

Analysis started: 08-Jul-2021 21:14:46 / finished: 09-Jul-2021 04:22:03

Elapsed time: 25636.901 seconds