RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 02-Jul-2021 12:40:18 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NGH8/2_msa/A6NGH8_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NGH8/3_mltree/A6NGH8 --seed 2 --threads 7 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (7 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NGH8/2_msa/A6NGH8_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 485 sites

WARNING: Sequences tr_A0A1D5NZD2_A0A1D5NZD2_CHICK_9031 and tr_A0A226MK97_A0A226MK97_CALSU_9009 are exactly identical!
WARNING: Sequences tr_A0A1D5NZD2_A0A1D5NZD2_CHICK_9031 and tr_A0A226PHS7_A0A226PHS7_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A1D5P3L8_A0A1D5P3L8_CHICK_9031 and tr_H0YTV7_H0YTV7_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_A0A1D5P3L8_A0A1D5P3L8_CHICK_9031 and tr_U3K3W2_U3K3W2_FICAL_59894 are exactly identical!
WARNING: Sequences tr_A0A1D5P3L8_A0A1D5P3L8_CHICK_9031 and tr_A0A091UIT4_A0A091UIT4_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5P3L8_A0A1D5P3L8_CHICK_9031 and tr_A0A087R3L6_A0A087R3L6_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5P3L8_A0A1D5P3L8_CHICK_9031 and tr_A0A091FS51_A0A091FS51_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A1D5P3L8_A0A1D5P3L8_CHICK_9031 and tr_A0A093GP29_A0A093GP29_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A1D5P3L8_A0A1D5P3L8_CHICK_9031 and tr_A0A218UPF7_A0A218UPF7_9PASE_299123 are exactly identical!
WARNING: Sequences tr_E9PUR0_E9PUR0_MOUSE_10090 and tr_A0A0G2K916_A0A0G2K916_RAT_10116 are exactly identical!
WARNING: Sequences tr_E9PUR0_E9PUR0_MOUSE_10090 and tr_A0A1U8BL92_A0A1U8BL92_MESAU_10036 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_G3QKE5_G3QKE5_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_H2PWF9_H2PWF9_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_H2R235_H2R235_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_I3M2Y9_I3M2Y9_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and sp_O75832_PSD10_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_G1L817_G1L817_AILME_9646 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A2R9B2I6_A0A2R9B2I6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A2U3ZV10_A0A2U3ZV10_ODORO_9708 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A2Y9L2W8_A0A2Y9L2W8_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XMZ2_M3XMZ2_MUSPF_9669 and tr_G1PXK4_G1PXK4_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_M3XMZ2_M3XMZ2_MUSPF_9669 and tr_E2QST3_E2QST3_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3XMZ2_M3XMZ2_MUSPF_9669 and tr_H0WS78_H0WS78_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3XMZ2_M3XMZ2_MUSPF_9669 and tr_D2HE78_D2HE78_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3XMZ2_M3XMZ2_MUSPF_9669 and tr_L5KAQ8_L5KAQ8_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_M3XMZ2_M3XMZ2_MUSPF_9669 and tr_A0A2I2U1I5_A0A2I2U1I5_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3XMZ2_M3XMZ2_MUSPF_9669 and tr_A0A2U3ZBE6_A0A2U3ZBE6_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3XMZ2_M3XMZ2_MUSPF_9669 and tr_A0A2Y9KVX7_A0A2Y9KVX7_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XMZ2_M3XMZ2_MUSPF_9669 and tr_A0A384D7I2_A0A384D7I2_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3XQF5_M3XQF5_MUSPF_9669 and tr_A0A2Y9LB94_A0A2Y9LB94_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_Q9VBP3_TNKS_DROME_7227 and tr_B4ICC0_B4ICC0_DROSE_7238 are exactly identical!
WARNING: Sequences tr_A0A2I3HLI6_A0A2I3HLI6_NOMLE_61853 and tr_A0A2K5LPM7_A0A2K5LPM7_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3HLI6_A0A2I3HLI6_NOMLE_61853 and tr_A0A2K6DJR0_A0A2K6DJR0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I3HLI6_A0A2I3HLI6_NOMLE_61853 and tr_A0A2K5YP31_A0A2K5YP31_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1RNN5_G1RNN5_NOMLE_61853 and tr_F7EBU2_F7EBU2_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1RNN5_G1RNN5_NOMLE_61853 and tr_G7PDE9_G7PDE9_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1RNN5_G1RNN5_NOMLE_61853 and tr_A0A2I3NH47_A0A2I3NH47_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1RNN5_G1RNN5_NOMLE_61853 and tr_A0A3Q0E3J7_A0A3Q0E3J7_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1RNN5_G1RNN5_NOMLE_61853 and tr_A0A2K5N412_A0A2K5N412_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1RNN5_G1RNN5_NOMLE_61853 and tr_A0A2K6CI25_A0A2K6CI25_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1RNN5_G1RNN5_NOMLE_61853 and tr_A0A2K6ACH1_A0A2K6ACH1_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1S889_G1S889_NOMLE_61853 and sp_Q5R6D7_ASB8_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1S889_G1S889_NOMLE_61853 and tr_H2Q5T1_H2Q5T1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1S889_G1S889_NOMLE_61853 and sp_Q9H765_ASB8_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1S889_G1S889_NOMLE_61853 and tr_G7PHQ2_G7PHQ2_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1S889_G1S889_NOMLE_61853 and tr_A0A096MRB6_A0A096MRB6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1S889_G1S889_NOMLE_61853 and tr_A0A0D9R1V8_A0A0D9R1V8_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1S889_G1S889_NOMLE_61853 and tr_A0A2R9B7R6_A0A2R9B7R6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_G3SG36_G3SG36_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_H2PGS0_H2PGS0_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_F6XSE4_F6XSE4_CANLF_9615 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_K7DU15_K7DU15_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_F6W4W9_F6W4W9_HORSE_9796 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_I3LZI0_I3LZI0_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_H0XAW3_H0XAW3_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_H0VK14_H0VK14_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and sp_Q8IWZ3_ANKH1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_F6ZH85_F6ZH85_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_F7CJQ2_F7CJQ2_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_G1LX53_G1LX53_AILME_9646 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_G7P8G5_G7P8G5_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A2I3N6E9_A0A2I3N6E9_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A091CP42_A0A091CP42_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A0D9RK88_A0A0D9RK88_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A1S3W4I1_A0A1S3W4I1_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A1U7TKP8_A0A1U7TKP8_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A2K5Y5C2_A0A2K5Y5C2_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A2U4AGJ9_A0A2U4AGJ9_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A2U3ZD56_A0A2U3ZD56_ODORO_9708 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A2U3XJ53_A0A2U3XJ53_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A2Y9PPE1_A0A2Y9PPE1_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A2Y9SX60_A0A2Y9SX60_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G1NZG4_G1NZG4_MYOLU_59463 and tr_A0A384B3D1_A0A384B3D1_BALAS_310752 are exactly identical!
WARNING: Sequences tr_G3GR75_G3GR75_CRIGR_10029 and tr_A0A1U7QYQ7_A0A1U7QYQ7_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A2I2YPI1_A0A2I2YPI1_GORGO_9595 and tr_F6WXQ9_F6WXQ9_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A2I2YPI1_A0A2I2YPI1_GORGO_9595 and tr_A0A2K5LLD3_A0A2K5LLD3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I2YPI1_A0A2I2YPI1_GORGO_9595 and tr_A0A2K5Z4Y7_A0A2K5Z4Y7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G3QMX5_G3QMX5_GORGO_9595 and tr_H2NAT9_H2NAT9_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3QMX5_G3QMX5_GORGO_9595 and tr_H2Q1Y0_H2Q1Y0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QMX5_G3QMX5_GORGO_9595 and sp_Q12955_ANK3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QMX5_G3QMX5_GORGO_9595 and tr_F7D3K5_F7D3K5_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G3QMX5_G3QMX5_GORGO_9595 and tr_A0A2R9BXS8_A0A2R9BXS8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_K7CMT6_K7CMT6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_F6PH71_F6PH71_HORSE_9796 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and sp_Q8NB46_ANR52_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_H9EQD1_H9EQD1_MACMU_9544 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_F6UX12_F6UX12_CALJA_9483 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_E1BIQ7_E1BIQ7_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_A0A096NH02_A0A096NH02_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_A0A0D9QYS1_A0A0D9QYS1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_A0A1S3FNL5_A0A1S3FNL5_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_A0A2K5NLJ3_A0A2K5NLJ3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_A0A2K6AMX8_A0A2K6AMX8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_A0A2K5Y8N1_A0A2K5Y8N1_MANLE_9568 are exactly identical!
WARNING: Sequences tr_H2NHP2_H2NHP2_PONAB_9601 and tr_A0A2R8ZGJ2_A0A2R8ZGJ2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2PBD8_H2PBD8_PONAB_9601 and sp_O15084_ANR28_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2PBD8_H2PBD8_PONAB_9601 and tr_F7E5S7_F7E5S7_MACMU_9544 are exactly identical!
WARNING: Sequences tr_H2PBD8_H2PBD8_PONAB_9601 and tr_F7H6C7_F7H6C7_CALJA_9483 are exactly identical!
WARNING: Sequences tr_H2PBD8_H2PBD8_PONAB_9601 and tr_G7NY15_G7NY15_MACFA_9541 are exactly identical!
WARNING: Sequences tr_Q295L9_Q295L9_DROPS_46245 and tr_B4GG04_B4GG04_DROPE_7234 are exactly identical!
WARNING: Sequences tr_A0A2I3TF47_A0A2I3TF47_PANTR_9598 and tr_A0A2R9CIP4_A0A2R9CIP4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F6YTT0_F6YTT0_HORSE_9796 and tr_W5QDB9_W5QDB9_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_F6YTT0_F6YTT0_HORSE_9796 and tr_I3LRC3_I3LRC3_PIG_9823 are exactly identical!
WARNING: Sequences tr_F6YTT0_F6YTT0_HORSE_9796 and sp_Q08E43_ASB8_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_F6YTT0_F6YTT0_HORSE_9796 and tr_A0A2Y9EK66_A0A2Y9EK66_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_F6YTT0_F6YTT0_HORSE_9796 and tr_A0A383ZWL3_A0A383ZWL3_BALAS_310752 are exactly identical!
WARNING: Sequences tr_W5Q8W7_W5Q8W7_SHEEP_9940 and tr_E1B719_E1B719_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A088AN05_A0A088AN05_APIME_7460 and tr_A0A2A3EE44_A0A2A3EE44_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NYD8_A0A158NYD8_ATTCE_12957 and tr_F4WSY2_F4WSY2_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A158NYD8_A0A158NYD8_ATTCE_12957 and tr_A0A151WTV0_A0A151WTV0_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A158NYD8_A0A158NYD8_ATTCE_12957 and tr_A0A195AYV4_A0A195AYV4_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NYD8_A0A158NYD8_ATTCE_12957 and tr_A0A195F6K1_A0A195F6K1_9HYME_34720 are exactly identical!
WARNING: Sequences tr_H0WIT0_H0WIT0_OTOGA_30611 and tr_G3TE01_G3TE01_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_A0A286XC52_A0A286XC52_CAVPO_10141 and tr_F1SLZ6_F1SLZ6_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A0E0GU17_A0A0E0GU17_ORYNI_4536 and tr_A0A0E0P1K0_A0A0E0P1K0_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A1D5QZ92_A0A1D5QZ92_MACMU_9544 and tr_A0A2I3LK46_A0A2I3LK46_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5QZ92_A0A1D5QZ92_MACMU_9544 and tr_A0A0D9R9F2_A0A0D9R9F2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5QZ92_A0A1D5QZ92_MACMU_9544 and tr_A0A2K5M286_A0A2K5M286_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5QZ92_A0A1D5QZ92_MACMU_9544 and tr_A0A2K6DZ99_A0A2K6DZ99_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5QZ92_A0A1D5QZ92_MACMU_9544 and tr_A0A2K5YL66_A0A2K5YL66_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A287BTN9_A0A287BTN9_PIG_9823 and tr_A0A384B9U4_A0A384B9U4_BALAS_310752 are exactly identical!
WARNING: Sequences tr_G1L9X1_G1L9X1_AILME_9646 and tr_A0A2Y9J2Q3_A0A2Y9J2Q3_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G1L9X1_G1L9X1_AILME_9646 and tr_A0A384CIA2_A0A384CIA2_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A151NR06_A0A151NR06_ALLMI_8496 and tr_A0A3Q0HN34_A0A3Q0HN34_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A091UYI1_A0A091UYI1_NIPNI_128390 and tr_A0A087R8K2_A0A087R8K2_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A087R3I8_A0A087R3I8_APTFO_9233 and tr_A0A093HMW5_A0A093HMW5_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A087R3I8_A0A087R3I8_APTFO_9233 and tr_A0A0A0ACY5_A0A0A0ACY5_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A0V0XCI2_A0A0V0XCI2_9BILA_92179 and tr_A0A0V0VN75_A0A0V0VN75_9BILA_181606 are exactly identical!
WARNING: Sequences tr_A0A0V0XCI2_A0A0V0XCI2_9BILA_92179 and tr_A0A0V1LQP1_A0A0V1LQP1_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A0V0XCI2_A0A0V0XCI2_9BILA_92179 and tr_A0A0V1P9M3_A0A0V1P9M3_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V0XCI2_A0A0V0XCI2_9BILA_92179 and tr_A0A0V0UCC5_A0A0V0UCC5_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A151J537_A0A151J537_9HYME_471704 and tr_A0A151IH74_A0A151IH74_9HYME_456900 are exactly identical!
WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0SZG8_A0A2D0SZG8_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0SZG9_A0A2D0SZG9_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0SZH1_A0A2D0SZH1_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0SZW2_A0A2D0SZW2_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0SZW7_A0A2D0SZW7_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0T0E7_A0A2D0T0E7_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0T0F3_A0A2D0T0F3_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2K5MMH2_A0A2K5MMH2_CERAT_9531 and tr_A0A2K5ZVY1_A0A2K5ZVY1_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2P6MT84_A0A2P6MT84_9MYCE_1890364 and tr_A0A2P6NBZ4_A0A2P6NBZ4_9MYCE_1890364 are exactly identical!
WARNING: Sequences tr_A0A2U4BEB4_A0A2U4BEB4_TURTR_9739 and tr_A0A2Y9M5I2_A0A2Y9M5I2_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4BEB4_A0A2U4BEB4_TURTR_9739 and tr_A0A383Z7Q5_A0A383Z7Q5_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 143

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NGH8/3_mltree/A6NGH8.raxml.reduced.phy

Alignment comprises 1 partitions and 485 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 485 / 485
Gaps: 27.70 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NGH8/3_mltree/A6NGH8.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 7 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 70 / 5600
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -767750.821247] Initial branch length optimization
[00:00:03 -633390.650508] Model parameter optimization (eps = 10.000000)
[00:00:34 -630369.447047] AUTODETECT spr round 1 (radius: 5)
[00:02:17 -474441.011403] AUTODETECT spr round 2 (radius: 10)
[00:04:04 -382467.848529] AUTODETECT spr round 3 (radius: 15)
[00:06:01 -327686.548099] AUTODETECT spr round 4 (radius: 20)
[00:08:00 -307647.210323] AUTODETECT spr round 5 (radius: 25)
[00:10:38 -301136.339570] SPR radius for FAST iterations: 25 (autodetect)
[00:10:38 -301136.339570] Model parameter optimization (eps = 3.000000)
[00:10:53 -301043.802305] FAST spr round 1 (radius: 25)
[00:13:47 -281631.924261] FAST spr round 2 (radius: 25)
[00:16:07 -280513.425927] FAST spr round 3 (radius: 25)
[00:18:09 -280433.948363] FAST spr round 4 (radius: 25)
[00:19:58 -280415.431654] FAST spr round 5 (radius: 25)
[00:21:40 -280411.784619] FAST spr round 6 (radius: 25)
[00:23:16 -280411.782742] Model parameter optimization (eps = 1.000000)
[00:23:28 -280409.554855] SLOW spr round 1 (radius: 5)
[00:25:23 -280354.268853] SLOW spr round 2 (radius: 5)
[00:27:15 -280350.550398] SLOW spr round 3 (radius: 5)
[00:29:03 -280350.152211] SLOW spr round 4 (radius: 5)
[00:30:51 -280347.291790] SLOW spr round 5 (radius: 5)
[00:32:37 -280347.289997] SLOW spr round 6 (radius: 10)
[00:34:33 -280342.218852] SLOW spr round 7 (radius: 5)
[00:36:35 -280337.731107] SLOW spr round 8 (radius: 5)
[00:38:28 -280337.044562] SLOW spr round 9 (radius: 5)
[00:40:17 -280336.874960] SLOW spr round 10 (radius: 5)
[00:42:03 -280336.874515] SLOW spr round 11 (radius: 10)
[00:44:00 -280335.860878] SLOW spr round 12 (radius: 5)
[00:46:01 -280329.763126] SLOW spr round 13 (radius: 5)
[00:47:54 -280329.655393] SLOW spr round 14 (radius: 5)
[00:49:42 -280329.653128] SLOW spr round 15 (radius: 10)
[00:51:40 -280325.877076] SLOW spr round 16 (radius: 5)
[00:53:40 -280324.828852] SLOW spr round 17 (radius: 5)
[00:55:33 -280324.827621] SLOW spr round 18 (radius: 10)
[00:57:35 -280322.811592] SLOW spr round 19 (radius: 5)
[00:59:35 -280321.507475] SLOW spr round 20 (radius: 5)
[01:01:27 -280321.489921] SLOW spr round 21 (radius: 10)
[01:03:28 -280321.489088] SLOW spr round 22 (radius: 15)
[01:06:51 -280306.030298] SLOW spr round 23 (radius: 5)
[01:08:56 -280305.071742] SLOW spr round 24 (radius: 5)
[01:10:51 -280305.067445] SLOW spr round 25 (radius: 10)
[01:12:56 -280305.067288] SLOW spr round 26 (radius: 15)
[01:16:18 -280304.789677] SLOW spr round 27 (radius: 5)
[01:18:21 -280304.788708] SLOW spr round 28 (radius: 10)
[01:20:43 -280304.788382] SLOW spr round 29 (radius: 15)
[01:24:00 -280304.788271] SLOW spr round 30 (radius: 20)
[01:28:43 -280304.788234] SLOW spr round 31 (radius: 25)
[01:34:17 -280304.788221] Model parameter optimization (eps = 0.100000)

[01:34:25] ML tree search #1, logLikelihood: -280304.568867

[01:34:25 -776633.258843] Initial branch length optimization
[01:34:28 -640439.673476] Model parameter optimization (eps = 10.000000)
[01:34:53 -637344.924401] AUTODETECT spr round 1 (radius: 5)
[01:36:37 -480841.670217] AUTODETECT spr round 2 (radius: 10)
[01:38:25 -387374.678229] AUTODETECT spr round 3 (radius: 15)
[01:40:22 -323600.972626] AUTODETECT spr round 4 (radius: 20)
[01:42:22 -305635.510873] AUTODETECT spr round 5 (radius: 25)
[01:44:43 -299318.767784] SPR radius for FAST iterations: 25 (autodetect)
[01:44:43 -299318.767784] Model parameter optimization (eps = 3.000000)
[01:44:59 -299184.835065] FAST spr round 1 (radius: 25)
[01:47:45 -281588.193350] FAST spr round 2 (radius: 25)
[01:50:06 -280700.795013] FAST spr round 3 (radius: 25)
[01:52:11 -280488.622623] FAST spr round 4 (radius: 25)
[01:54:03 -280448.860501] FAST spr round 5 (radius: 25)
[01:55:46 -280428.435207] FAST spr round 6 (radius: 25)
[01:57:25 -280417.387164] FAST spr round 7 (radius: 25)
[01:58:58 -280417.385274] Model parameter optimization (eps = 1.000000)
[01:59:12 -280413.337490] SLOW spr round 1 (radius: 5)
[02:01:06 -280364.636129] SLOW spr round 2 (radius: 5)
[02:02:57 -280361.562270] SLOW spr round 3 (radius: 5)
[02:04:47 -280359.135921] SLOW spr round 4 (radius: 5)
[02:06:35 -280357.741851] SLOW spr round 5 (radius: 5)
[02:08:21 -280357.736674] SLOW spr round 6 (radius: 10)
[02:10:18 -280352.477323] SLOW spr round 7 (radius: 5)
[02:12:23 -280346.754629] SLOW spr round 8 (radius: 5)
[02:14:18 -280345.510008] SLOW spr round 9 (radius: 5)
[02:16:07 -280343.361648] SLOW spr round 10 (radius: 5)
[02:17:55 -280343.038151] SLOW spr round 11 (radius: 5)
[02:19:42 -280343.035252] SLOW spr round 12 (radius: 10)
[02:21:37 -280337.656883] SLOW spr round 13 (radius: 5)
[02:23:39 -280334.211983] SLOW spr round 14 (radius: 5)
[02:25:34 -280332.452368] SLOW spr round 15 (radius: 5)
[02:27:23 -280332.452126] SLOW spr round 16 (radius: 10)
[02:29:19 -280332.452098] SLOW spr round 17 (radius: 15)
[02:32:47 -280332.452090] SLOW spr round 18 (radius: 20)
[02:37:44 -280332.452084] SLOW spr round 19 (radius: 25)
[02:43:35 -280332.452080] Model parameter optimization (eps = 0.100000)

[02:43:41] ML tree search #2, logLikelihood: -280332.398272

[02:43:42 -775945.808758] Initial branch length optimization
[02:43:44 -642563.510761] Model parameter optimization (eps = 10.000000)
[02:44:12 -639361.200719] AUTODETECT spr round 1 (radius: 5)
[02:45:56 -479464.998672] AUTODETECT spr round 2 (radius: 10)
[02:47:47 -383390.810174] AUTODETECT spr round 3 (radius: 15)
[02:49:43 -330732.030379] AUTODETECT spr round 4 (radius: 20)
[02:51:45 -305959.020387] AUTODETECT spr round 5 (radius: 25)
[02:54:03 -299896.273599] SPR radius for FAST iterations: 25 (autodetect)
[02:54:03 -299896.273599] Model parameter optimization (eps = 3.000000)
[02:54:18 -299702.875332] FAST spr round 1 (radius: 25)
[02:57:05 -282493.279251] FAST spr round 2 (radius: 25)
[02:59:36 -280782.290857] FAST spr round 3 (radius: 25)
[03:01:45 -280440.449282] FAST spr round 4 (radius: 25)
[03:03:40 -280401.947331] FAST spr round 5 (radius: 25)
[03:05:24 -280371.289237] FAST spr round 6 (radius: 25)
[03:07:00 -280371.287034] Model parameter optimization (eps = 1.000000)
[03:07:13 -280368.941061] SLOW spr round 1 (radius: 5)
[03:09:12 -280317.375297] SLOW spr round 2 (radius: 5)
[03:11:06 -280309.690495] SLOW spr round 3 (radius: 5)
[03:12:57 -280307.794289] SLOW spr round 4 (radius: 5)
[03:14:45 -280307.793916] SLOW spr round 5 (radius: 10)
[03:16:44 -280299.975099] SLOW spr round 6 (radius: 5)
[03:18:47 -280294.984761] SLOW spr round 7 (radius: 5)
[03:20:45 -280274.678588] SLOW spr round 8 (radius: 5)
[03:22:37 -280260.296516] SLOW spr round 9 (radius: 5)
[03:24:24 -280260.296358] SLOW spr round 10 (radius: 10)
[03:26:20 -280259.189939] SLOW spr round 11 (radius: 5)
[03:28:21 -280253.952279] SLOW spr round 12 (radius: 5)
[03:30:15 -280253.952252] SLOW spr round 13 (radius: 10)
[03:32:16 -280253.952248] SLOW spr round 14 (radius: 15)
[03:35:46 -280245.327624] SLOW spr round 15 (radius: 5)
[03:37:53 -280244.325489] SLOW spr round 16 (radius: 5)
[03:39:49 -280244.010924] SLOW spr round 17 (radius: 5)
[03:41:41 -280241.520342] SLOW spr round 18 (radius: 5)
[03:43:29 -280241.360286] SLOW spr round 19 (radius: 5)
[03:45:15 -280241.359492] SLOW spr round 20 (radius: 10)
[03:47:10 -280240.465371] SLOW spr round 21 (radius: 5)
[03:49:12 -280239.653782] SLOW spr round 22 (radius: 5)
[03:51:06 -280239.653031] SLOW spr round 23 (radius: 10)
[03:53:09 -280239.652980] SLOW spr round 24 (radius: 15)
[03:56:42 -280237.005457] SLOW spr round 25 (radius: 5)
[03:58:48 -280235.917441] SLOW spr round 26 (radius: 5)
[04:00:44 -280235.917251] SLOW spr round 27 (radius: 10)
[04:02:50 -280234.132394] SLOW spr round 28 (radius: 5)
[04:04:51 -280230.753178] SLOW spr round 29 (radius: 5)
[04:06:45 -280230.748588] SLOW spr round 30 (radius: 10)
[04:08:45 -280230.367426] SLOW spr round 31 (radius: 5)
[04:10:45 -280230.367078] SLOW spr round 32 (radius: 10)
[04:12:56 -280230.367058] SLOW spr round 33 (radius: 15)
[04:16:30 -280230.367051] SLOW spr round 34 (radius: 20)
[04:21:14 -280229.320705] SLOW spr round 35 (radius: 5)
[04:23:21 -280228.802348] SLOW spr round 36 (radius: 5)
[04:25:18 -280228.800037] SLOW spr round 37 (radius: 10)
[04:27:24 -280228.799053] SLOW spr round 38 (radius: 15)
[04:31:01 -280227.271596] SLOW spr round 39 (radius: 5)
[04:33:06 -280227.270422] SLOW spr round 40 (radius: 10)
[04:35:27 -280227.270179] SLOW spr round 41 (radius: 15)
[04:39:00 -280227.270053] SLOW spr round 42 (radius: 20)
[04:43:46 -280227.269971] SLOW spr round 43 (radius: 25)
[04:49:22 -280227.269916] Model parameter optimization (eps = 0.100000)

[04:49:28] ML tree search #3, logLikelihood: -280227.120585

[04:49:28 -777084.553552] Initial branch length optimization
[04:49:31 -642883.006473] Model parameter optimization (eps = 10.000000)
[04:49:54 -639782.123830] AUTODETECT spr round 1 (radius: 5)
[04:51:38 -472502.004934] AUTODETECT spr round 2 (radius: 10)
[04:53:29 -369441.924538] AUTODETECT spr round 3 (radius: 15)
[04:55:25 -327008.839570] AUTODETECT spr round 4 (radius: 20)
[04:57:29 -302782.760428] AUTODETECT spr round 5 (radius: 25)
[04:59:50 -295371.957158] SPR radius for FAST iterations: 25 (autodetect)
[04:59:50 -295371.957158] Model parameter optimization (eps = 3.000000)
[05:00:04 -295297.910232] FAST spr round 1 (radius: 25)
[05:02:55 -281434.738963] FAST spr round 2 (radius: 25)
[05:05:24 -280571.040826] FAST spr round 3 (radius: 25)
[05:07:31 -280413.571305] FAST spr round 4 (radius: 25)
[05:09:25 -280397.804978] FAST spr round 5 (radius: 25)
[05:11:09 -280391.422103] FAST spr round 6 (radius: 25)
[05:12:46 -280391.421531] Model parameter optimization (eps = 1.000000)
[05:12:57 -280386.806990] SLOW spr round 1 (radius: 5)
[05:14:54 -280324.436659] SLOW spr round 2 (radius: 5)
[05:16:48 -280310.187604] SLOW spr round 3 (radius: 5)
[05:18:37 -280308.217597] SLOW spr round 4 (radius: 5)
[05:20:23 -280308.217520] SLOW spr round 5 (radius: 10)
[05:22:20 -280304.179648] SLOW spr round 6 (radius: 5)
[05:24:20 -280303.620146] SLOW spr round 7 (radius: 5)
[05:26:14 -280303.619642] SLOW spr round 8 (radius: 10)
[05:28:15 -280303.619575] SLOW spr round 9 (radius: 15)
[05:31:49 -280300.602525] SLOW spr round 10 (radius: 5)
[05:33:53 -280300.481058] SLOW spr round 11 (radius: 5)
[05:35:49 -280300.480978] SLOW spr round 12 (radius: 10)
[05:37:54 -280300.480976] SLOW spr round 13 (radius: 15)
[05:41:25 -280300.480975] SLOW spr round 14 (radius: 20)
[05:46:03 -280300.480975] SLOW spr round 15 (radius: 25)
[05:51:28 -280300.480974] Model parameter optimization (eps = 0.100000)

[05:51:33] ML tree search #4, logLikelihood: -280300.441046

[05:51:33 -778517.861226] Initial branch length optimization
[05:51:35 -643559.473319] Model parameter optimization (eps = 10.000000)
[05:52:09 -640484.762806] AUTODETECT spr round 1 (radius: 5)
[05:53:52 -480320.304413] AUTODETECT spr round 2 (radius: 10)
[05:55:41 -388219.973746] AUTODETECT spr round 3 (radius: 15)
[05:57:37 -340237.450407] AUTODETECT spr round 4 (radius: 20)
[05:59:52 -307840.335027] AUTODETECT spr round 5 (radius: 25)
[06:02:09 -301547.347948] SPR radius for FAST iterations: 25 (autodetect)
[06:02:09 -301547.347948] Model parameter optimization (eps = 3.000000)
[06:02:28 -301391.743369] FAST spr round 1 (radius: 25)
[06:05:20 -281711.607310] FAST spr round 2 (radius: 25)
[06:07:44 -280625.379299] FAST spr round 3 (radius: 25)
[06:09:46 -280410.232682] FAST spr round 4 (radius: 25)
[06:11:39 -280385.001398] FAST spr round 5 (radius: 25)
[06:13:23 -280372.107042] FAST spr round 6 (radius: 25)
[06:14:59 -280371.762185] FAST spr round 7 (radius: 25)
[06:16:32 -280371.760881] Model parameter optimization (eps = 1.000000)
[06:16:43 -280368.898438] SLOW spr round 1 (radius: 5)
[06:18:36 -280292.505698] SLOW spr round 2 (radius: 5)
[06:20:28 -280279.972415] SLOW spr round 3 (radius: 5)
[06:22:16 -280279.204087] SLOW spr round 4 (radius: 5)
[06:24:03 -280279.203695] SLOW spr round 5 (radius: 10)
[06:26:00 -280270.684917] SLOW spr round 6 (radius: 5)
[06:28:03 -280270.597502] SLOW spr round 7 (radius: 10)
[06:30:17 -280269.557158] SLOW spr round 8 (radius: 5)
[06:32:18 -280269.264948] SLOW spr round 9 (radius: 5)
[06:34:11 -280269.263918] SLOW spr round 10 (radius: 10)
[06:36:12 -280269.263860] SLOW spr round 11 (radius: 15)
[06:39:49 -280261.841424] SLOW spr round 12 (radius: 5)
[06:41:57 -280257.088130] SLOW spr round 13 (radius: 5)
[06:43:53 -280257.088015] SLOW spr round 14 (radius: 10)
[06:45:59 -280253.727282] SLOW spr round 15 (radius: 5)
[06:48:02 -280250.892019] SLOW spr round 16 (radius: 5)
[06:49:56 -280250.890812] SLOW spr round 17 (radius: 10)
[06:51:57 -280250.890748] SLOW spr round 18 (radius: 15)
[06:55:30 -280250.890735] SLOW spr round 19 (radius: 20)
[07:00:16 -280250.890728] SLOW spr round 20 (radius: 25)
[07:05:54 -280250.890723] Model parameter optimization (eps = 0.100000)

[07:06:01] ML tree search #5, logLikelihood: -280250.552466

[07:06:01 -772538.501183] Initial branch length optimization
[07:06:05 -638055.855101] Model parameter optimization (eps = 10.000000)
[07:06:33 -634877.474871] AUTODETECT spr round 1 (radius: 5)
[07:08:16 -474129.202442] AUTODETECT spr round 2 (radius: 10)
[07:10:07 -377886.792454] AUTODETECT spr round 3 (radius: 15)
[07:12:03 -338099.759908] AUTODETECT spr round 4 (radius: 20)
[07:14:11 -319905.970674] AUTODETECT spr round 5 (radius: 25)
[07:16:48 -302359.987590] SPR radius for FAST iterations: 25 (autodetect)
[07:16:48 -302359.987590] Model parameter optimization (eps = 3.000000)
[07:17:06 -302292.262346] FAST spr round 1 (radius: 25)
[07:20:06 -281462.680454] FAST spr round 2 (radius: 25)
[07:22:33 -280548.479158] FAST spr round 3 (radius: 25)
[07:24:38 -280444.209388] FAST spr round 4 (radius: 25)
[07:26:28 -280432.947424] FAST spr round 5 (radius: 25)
[07:28:10 -280431.346970] FAST spr round 6 (radius: 25)
[07:29:48 -280429.240366] FAST spr round 7 (radius: 25)
[07:31:23 -280429.239730] Model parameter optimization (eps = 1.000000)
[07:31:34 -280427.790380] SLOW spr round 1 (radius: 5)
[07:33:30 -280371.840136] SLOW spr round 2 (radius: 5)
[07:35:23 -280343.544151] SLOW spr round 3 (radius: 5)
[07:37:11 -280343.543803] SLOW spr round 4 (radius: 10)
[07:39:12 -280334.303717] SLOW spr round 5 (radius: 5)
[07:41:15 -280326.189775] SLOW spr round 6 (radius: 5)
[07:43:11 -280320.236180] SLOW spr round 7 (radius: 5)
[07:45:02 -280316.999460] SLOW spr round 8 (radius: 5)
[07:46:50 -280316.999435] SLOW spr round 9 (radius: 10)
[07:48:51 -280307.690296] SLOW spr round 10 (radius: 5)
[07:50:56 -280300.995716] SLOW spr round 11 (radius: 5)
[07:52:53 -280295.854834] SLOW spr round 12 (radius: 5)
[07:54:44 -280295.560794] SLOW spr round 13 (radius: 5)
[07:56:32 -280295.560270] SLOW spr round 14 (radius: 10)
[07:58:31 -280293.248157] SLOW spr round 15 (radius: 5)
[08:00:35 -280289.018872] SLOW spr round 16 (radius: 5)
[08:02:28 -280289.017405] SLOW spr round 17 (radius: 10)
[08:04:33 -280289.017230] SLOW spr round 18 (radius: 15)
[08:08:13 -280285.852876] SLOW spr round 19 (radius: 5)
[08:10:18 -280285.592392] SLOW spr round 20 (radius: 5)
[08:12:14 -280285.591631] SLOW spr round 21 (radius: 10)
[08:14:22 -280279.334905] SLOW spr round 22 (radius: 5)
[08:16:23 -280279.032637] SLOW spr round 23 (radius: 5)
[08:18:16 -280279.032216] SLOW spr round 24 (radius: 10)
[08:20:23 -280262.981618] SLOW spr round 25 (radius: 5)
[08:22:26 -280256.624262] SLOW spr round 26 (radius: 5)
[08:24:20 -280256.194261] SLOW spr round 27 (radius: 5)
[08:26:09 -280256.193922] SLOW spr round 28 (radius: 10)
[08:28:09 -280253.359468] SLOW spr round 29 (radius: 5)
[08:30:11 -280252.972336] SLOW spr round 30 (radius: 5)
[08:32:05 -280252.972127] SLOW spr round 31 (radius: 10)
[08:34:08 -280252.972104] SLOW spr round 32 (radius: 15)
[08:37:37 -280248.511838] SLOW spr round 33 (radius: 5)
[08:39:41 -280248.510267] SLOW spr round 34 (radius: 10)
[08:42:05 -280248.509995] SLOW spr round 35 (radius: 15)
[08:45:27 -280248.509939] SLOW spr round 36 (radius: 20)
[08:50:11 -280248.509927] SLOW spr round 37 (radius: 25)
[08:55:58 -280248.509924] Model parameter optimization (eps = 0.100000)

[08:56:05] ML tree search #6, logLikelihood: -280248.345720

[08:56:05 -775302.793875] Initial branch length optimization
[08:56:08 -638676.472808] Model parameter optimization (eps = 10.000000)
[08:56:43 -635423.188911] AUTODETECT spr round 1 (radius: 5)
[08:58:27 -480533.178051] AUTODETECT spr round 2 (radius: 10)
[09:00:19 -374626.052235] AUTODETECT spr round 3 (radius: 15)
[09:02:11 -337260.075171] AUTODETECT spr round 4 (radius: 20)
[09:04:14 -307386.702349] AUTODETECT spr round 5 (radius: 25)
[09:06:30 -302100.417955] SPR radius for FAST iterations: 25 (autodetect)
[09:06:30 -302100.417955] Model parameter optimization (eps = 3.000000)
[09:06:50 -301941.403026] FAST spr round 1 (radius: 25)
[09:09:43 -282260.610857] FAST spr round 2 (radius: 25)
[09:12:12 -280761.164500] FAST spr round 3 (radius: 25)
[09:14:21 -280538.175633] FAST spr round 4 (radius: 25)
[09:16:17 -280489.972707] FAST spr round 5 (radius: 25)
[09:18:03 -280482.126320] FAST spr round 6 (radius: 25)
[09:19:43 -280474.729027] FAST spr round 7 (radius: 25)
[09:21:18 -280474.723952] Model parameter optimization (eps = 1.000000)
[09:21:29 -280473.531904] SLOW spr round 1 (radius: 5)
[09:23:24 -280394.468926] SLOW spr round 2 (radius: 5)
[09:25:16 -280387.536162] SLOW spr round 3 (radius: 5)
[09:27:08 -280384.077377] SLOW spr round 4 (radius: 5)
[09:28:57 -280375.761699] SLOW spr round 5 (radius: 5)
[09:30:44 -280375.761601] SLOW spr round 6 (radius: 10)
[09:32:41 -280369.203650] SLOW spr round 7 (radius: 5)
[09:34:43 -280368.304350] SLOW spr round 8 (radius: 5)
[09:36:38 -280368.304300] SLOW spr round 9 (radius: 10)
[09:38:40 -280368.304262] SLOW spr round 10 (radius: 15)
[09:42:09 -280363.132716] SLOW spr round 11 (radius: 5)
[09:44:18 -280351.694390] SLOW spr round 12 (radius: 5)
[09:46:17 -280344.159094] SLOW spr round 13 (radius: 5)
[09:48:11 -280338.116400] SLOW spr round 14 (radius: 5)
[09:49:58 -280338.115685] SLOW spr round 15 (radius: 10)
[09:51:54 -280329.727118] SLOW spr round 16 (radius: 5)
[09:53:57 -280328.848387] SLOW spr round 17 (radius: 5)
[09:55:51 -280328.825208] SLOW spr round 18 (radius: 10)
[09:57:52 -280326.183238] SLOW spr round 19 (radius: 5)
[09:59:52 -280325.890918] SLOW spr round 20 (radius: 5)
[10:01:45 -280325.778611] SLOW spr round 21 (radius: 5)
[10:03:35 -280325.521001] SLOW spr round 22 (radius: 5)
[10:05:23 -280325.520152] SLOW spr round 23 (radius: 10)
[10:07:15 -280325.520072] SLOW spr round 24 (radius: 15)
[10:10:48 -280324.048334] SLOW spr round 25 (radius: 5)
[10:12:53 -280322.700106] SLOW spr round 26 (radius: 5)
[10:14:48 -280322.697863] SLOW spr round 27 (radius: 10)
[10:16:50 -280322.697606] SLOW spr round 28 (radius: 15)
[10:20:15 -280322.697568] SLOW spr round 29 (radius: 20)
[10:25:00 -280322.697561] SLOW spr round 30 (radius: 25)
[10:30:37 -280322.640905] Model parameter optimization (eps = 0.100000)

[10:30:44] ML tree search #7, logLikelihood: -280322.556920

[10:30:44 -777596.025666] Initial branch length optimization
[10:30:47 -640762.795761] Model parameter optimization (eps = 10.000000)
[10:31:11 -637437.339992] AUTODETECT spr round 1 (radius: 5)
[10:32:55 -480216.993111] AUTODETECT spr round 2 (radius: 10)
[10:34:44 -379125.327857] AUTODETECT spr round 3 (radius: 15)
[10:36:41 -325485.067277] AUTODETECT spr round 4 (radius: 20)
[10:38:50 -302374.631228] AUTODETECT spr round 5 (radius: 25)
[10:41:09 -297391.757676] SPR radius for FAST iterations: 25 (autodetect)
[10:41:09 -297391.757676] Model parameter optimization (eps = 3.000000)
[10:41:24 -297242.520753] FAST spr round 1 (radius: 25)
[10:44:30 -281328.857037] FAST spr round 2 (radius: 25)
[10:47:01 -280531.539772] FAST spr round 3 (radius: 25)
[10:49:12 -280433.048362] FAST spr round 4 (radius: 25)
[10:51:10 -280402.222415] FAST spr round 5 (radius: 25)
[10:52:52 -280396.660209] FAST spr round 6 (radius: 25)
[10:54:30 -280396.631654] Model parameter optimization (eps = 1.000000)
[10:54:42 -280391.595709] SLOW spr round 1 (radius: 5)
[10:56:39 -280328.701524] SLOW spr round 2 (radius: 5)
[10:58:33 -280323.906852] SLOW spr round 3 (radius: 5)
[11:00:24 -280316.309892] SLOW spr round 4 (radius: 5)
[11:02:11 -280316.305276] SLOW spr round 5 (radius: 10)
[11:04:08 -280307.970805] SLOW spr round 6 (radius: 5)
[11:06:11 -280301.892635] SLOW spr round 7 (radius: 5)
[11:08:05 -280300.210770] SLOW spr round 8 (radius: 5)
[11:09:54 -280300.210705] SLOW spr round 9 (radius: 10)
[11:11:53 -280297.279858] SLOW spr round 10 (radius: 5)
[11:13:54 -280296.510168] SLOW spr round 11 (radius: 5)
[11:15:47 -280296.509815] SLOW spr round 12 (radius: 10)
[11:17:48 -280296.509778] SLOW spr round 13 (radius: 15)
[11:21:22 -280276.048236] SLOW spr round 14 (radius: 5)
[11:23:30 -280268.725232] SLOW spr round 15 (radius: 5)
[11:25:29 -280258.984814] SLOW spr round 16 (radius: 5)
[11:27:19 -280258.984052] SLOW spr round 17 (radius: 10)
[11:29:18 -280257.442202] SLOW spr round 18 (radius: 5)
[11:31:19 -280257.084671] SLOW spr round 19 (radius: 5)
[11:33:12 -280257.082639] SLOW spr round 20 (radius: 10)
[11:35:14 -280257.082182] SLOW spr round 21 (radius: 15)
[11:38:46 -280252.927832] SLOW spr round 22 (radius: 5)
[11:40:52 -280252.343588] SLOW spr round 23 (radius: 5)
[11:42:47 -280252.339978] SLOW spr round 24 (radius: 10)
[11:44:51 -280252.339511] SLOW spr round 25 (radius: 15)
[11:48:20 -280252.339452] SLOW spr round 26 (radius: 20)
[11:53:03 -280252.339440] SLOW spr round 27 (radius: 25)
[11:58:30 -280252.339438] Model parameter optimization (eps = 0.100000)

[11:58:33] ML tree search #8, logLikelihood: -280252.336106

[11:58:33 -772163.016102] Initial branch length optimization
[11:58:36 -639969.088895] Model parameter optimization (eps = 10.000000)
[11:59:03 -636711.500993] AUTODETECT spr round 1 (radius: 5)
[12:00:46 -484445.499472] AUTODETECT spr round 2 (radius: 10)
[12:02:36 -378733.713046] AUTODETECT spr round 3 (radius: 15)
[12:04:34 -329930.557561] AUTODETECT spr round 4 (radius: 20)
[12:06:44 -306328.216570] AUTODETECT spr round 5 (radius: 25)
[12:09:16 -298796.043208] SPR radius for FAST iterations: 25 (autodetect)
[12:09:16 -298796.043208] Model parameter optimization (eps = 3.000000)
[12:09:31 -298594.171186] FAST spr round 1 (radius: 25)
[12:12:40 -281916.699393] FAST spr round 2 (radius: 25)
[12:15:17 -280577.801169] FAST spr round 3 (radius: 25)
[12:17:30 -280462.793473] FAST spr round 4 (radius: 25)
[12:19:28 -280434.803804] FAST spr round 5 (radius: 25)
[12:21:12 -280425.396115] FAST spr round 6 (radius: 25)
[12:22:50 -280416.938535] FAST spr round 7 (radius: 25)
[12:24:26 -280408.524226] FAST spr round 8 (radius: 25)
[12:26:01 -280393.089608] FAST spr round 9 (radius: 25)
[12:27:32 -280391.454305] FAST spr round 10 (radius: 25)
[12:29:02 -280391.453768] Model parameter optimization (eps = 1.000000)
[12:29:12 -280388.100599] SLOW spr round 1 (radius: 5)
[12:31:08 -280335.274199] SLOW spr round 2 (radius: 5)
[12:32:59 -280328.044196] SLOW spr round 3 (radius: 5)
[12:34:50 -280317.674125] SLOW spr round 4 (radius: 5)
[12:36:40 -280315.887590] SLOW spr round 5 (radius: 5)
[12:38:31 -280313.320026] SLOW spr round 6 (radius: 5)
[12:40:20 -280311.298052] SLOW spr round 7 (radius: 5)
[12:42:08 -280311.297290] SLOW spr round 8 (radius: 10)
[12:44:07 -280301.460769] SLOW spr round 9 (radius: 5)
[12:46:12 -280298.389080] SLOW spr round 10 (radius: 5)
[12:48:06 -280297.943759] SLOW spr round 11 (radius: 5)
[12:49:57 -280297.943723] SLOW spr round 12 (radius: 10)
[12:51:57 -280296.410553] SLOW spr round 13 (radius: 5)
[12:53:58 -280296.213910] SLOW spr round 14 (radius: 5)
[12:55:51 -280296.213820] SLOW spr round 15 (radius: 10)
[12:57:55 -280296.213818] SLOW spr round 16 (radius: 15)
[13:01:40 -280275.095574] SLOW spr round 17 (radius: 5)
[13:03:49 -280271.999509] SLOW spr round 18 (radius: 5)
[13:05:46 -280271.533425] SLOW spr round 19 (radius: 5)
[13:07:36 -280271.533264] SLOW spr round 20 (radius: 10)
[13:09:35 -280271.533262] SLOW spr round 21 (radius: 15)
[13:13:14 -280269.925025] SLOW spr round 22 (radius: 5)
[13:15:20 -280269.877806] SLOW spr round 23 (radius: 10)
[13:17:44 -280266.704296] SLOW spr round 24 (radius: 5)
[13:19:48 -280257.773957] SLOW spr round 25 (radius: 5)
[13:21:43 -280252.125395] SLOW spr round 26 (radius: 5)
[13:23:32 -280252.124687] SLOW spr round 27 (radius: 10)
[13:25:30 -280248.470771] SLOW spr round 28 (radius: 5)
[13:27:32 -280247.940484] SLOW spr round 29 (radius: 5)
[13:29:25 -280247.940221] SLOW spr round 30 (radius: 10)
[13:31:26 -280247.940213] SLOW spr round 31 (radius: 15)
[13:34:52 -280247.940213] SLOW spr round 32 (radius: 20)
[13:39:33 -280245.788278] SLOW spr round 33 (radius: 5)
[13:41:43 -280244.135709] SLOW spr round 34 (radius: 5)
[13:43:40 -280244.135266] SLOW spr round 35 (radius: 10)
[13:45:48 -280244.135240] SLOW spr round 36 (radius: 15)
[13:49:13 -280241.613682] SLOW spr round 37 (radius: 5)
[13:51:20 -280240.652505] SLOW spr round 38 (radius: 5)
[13:53:15 -280240.651712] SLOW spr round 39 (radius: 10)
[13:55:21 -280240.651685] SLOW spr round 40 (radius: 15)
[13:58:48 -280240.651677] SLOW spr round 41 (radius: 20)
[14:03:30 -280240.651676] SLOW spr round 42 (radius: 25)
[14:09:01 -280240.651676] Model parameter optimization (eps = 0.100000)

[14:09:07] ML tree search #9, logLikelihood: -280240.453250

[14:09:08 -776041.265242] Initial branch length optimization
[14:09:10 -645054.074013] Model parameter optimization (eps = 10.000000)
[14:09:44 -642102.989976] AUTODETECT spr round 1 (radius: 5)
[14:11:28 -480350.806872] AUTODETECT spr round 2 (radius: 10)
[14:13:22 -365331.945193] AUTODETECT spr round 3 (radius: 15)
[14:15:15 -320647.544775] AUTODETECT spr round 4 (radius: 20)
[14:17:14 -307248.585415] AUTODETECT spr round 5 (radius: 25)
[14:19:35 -301652.454515] SPR radius for FAST iterations: 25 (autodetect)
[14:19:35 -301652.454515] Model parameter optimization (eps = 3.000000)
[14:19:51 -301597.367727] FAST spr round 1 (radius: 25)
[14:22:38 -282359.370456] FAST spr round 2 (radius: 25)
[14:25:05 -281108.062420] FAST spr round 3 (radius: 25)
[14:27:09 -280785.939720] FAST spr round 4 (radius: 25)
[14:29:02 -280456.168313] FAST spr round 5 (radius: 25)
[14:30:45 -280445.417367] FAST spr round 6 (radius: 25)
[14:32:24 -280436.896775] FAST spr round 7 (radius: 25)
[14:33:59 -280433.912950] FAST spr round 8 (radius: 25)
[14:35:30 -280433.912700] Model parameter optimization (eps = 1.000000)
[14:35:49 -280430.705478] SLOW spr round 1 (radius: 5)
[14:37:43 -280380.148926] SLOW spr round 2 (radius: 5)
[14:39:35 -280368.545955] SLOW spr round 3 (radius: 5)
[14:41:26 -280368.296157] SLOW spr round 4 (radius: 5)
[14:43:14 -280368.295715] SLOW spr round 5 (radius: 10)
[14:45:18 -280352.953225] SLOW spr round 6 (radius: 5)
[14:47:23 -280345.716743] SLOW spr round 7 (radius: 5)
[14:49:21 -280340.856494] SLOW spr round 8 (radius: 5)
[14:51:15 -280333.572445] SLOW spr round 9 (radius: 5)
[14:53:04 -280333.570917] SLOW spr round 10 (radius: 10)
[14:55:03 -280330.136382] SLOW spr round 11 (radius: 5)
[14:57:04 -280330.136215] SLOW spr round 12 (radius: 10)
[14:59:21 -280330.136190] SLOW spr round 13 (radius: 15)
[15:02:46 -280315.646615] SLOW spr round 14 (radius: 5)
[15:04:53 -280315.452603] SLOW spr round 15 (radius: 5)
[15:06:50 -280315.452065] SLOW spr round 16 (radius: 10)
[15:08:57 -280315.452022] SLOW spr round 17 (radius: 15)
[15:12:24 -280315.452000] SLOW spr round 18 (radius: 20)
[15:17:01 -280315.451980] SLOW spr round 19 (radius: 25)
[15:22:38 -280315.451960] Model parameter optimization (eps = 0.100000)

[15:22:45] ML tree search #10, logLikelihood: -280315.274913

[15:22:45 -774069.514773] Initial branch length optimization
[15:22:51 -641204.739539] Model parameter optimization (eps = 10.000000)
[15:23:18 -638221.474512] AUTODETECT spr round 1 (radius: 5)
[15:25:02 -475376.428265] AUTODETECT spr round 2 (radius: 10)
[15:26:54 -377135.313320] AUTODETECT spr round 3 (radius: 15)
[15:28:50 -329191.255030] AUTODETECT spr round 4 (radius: 20)
[15:30:56 -306055.158177] AUTODETECT spr round 5 (radius: 25)
[15:33:42 -299411.580335] SPR radius for FAST iterations: 25 (autodetect)
[15:33:42 -299411.580335] Model parameter optimization (eps = 3.000000)
[15:33:57 -299268.058967] FAST spr round 1 (radius: 25)
[15:37:05 -281396.631739] FAST spr round 2 (radius: 25)
[15:39:42 -280521.424000] FAST spr round 3 (radius: 25)
[15:41:52 -280389.547195] FAST spr round 4 (radius: 25)
[15:43:45 -280367.720059] FAST spr round 5 (radius: 25)
[15:45:29 -280361.162366] FAST spr round 6 (radius: 25)
[15:47:06 -280361.162206] Model parameter optimization (eps = 1.000000)
[15:47:14 -280358.766946] SLOW spr round 1 (radius: 5)
[15:49:11 -280326.674599] SLOW spr round 2 (radius: 5)
[15:51:04 -280316.788187] SLOW spr round 3 (radius: 5)
[15:52:53 -280312.536826] SLOW spr round 4 (radius: 5)
[15:54:39 -280312.536434] SLOW spr round 5 (radius: 10)
[15:56:38 -280303.624304] SLOW spr round 6 (radius: 5)
[15:58:42 -280298.114009] SLOW spr round 7 (radius: 5)
[16:00:36 -280297.544321] SLOW spr round 8 (radius: 5)
[16:02:26 -280297.543327] SLOW spr round 9 (radius: 10)
[16:04:27 -280297.543232] SLOW spr round 10 (radius: 15)
[16:08:17 -280297.543209] SLOW spr round 11 (radius: 20)
[16:13:11 -280297.363349] SLOW spr round 12 (radius: 5)
[16:15:19 -280297.363323] SLOW spr round 13 (radius: 10)
[16:17:54 -280296.855659] SLOW spr round 14 (radius: 5)
[16:19:54 -280296.855639] SLOW spr round 15 (radius: 10)
[16:22:10 -280296.855634] SLOW spr round 16 (radius: 15)
[16:25:52 -280296.855592] SLOW spr round 17 (radius: 20)
[16:30:48 -280296.855587] SLOW spr round 18 (radius: 25)
[16:36:26 -280296.855583] Model parameter optimization (eps = 0.100000)

[16:36:31] ML tree search #11, logLikelihood: -280296.810574

[16:36:31 -774855.387732] Initial branch length optimization
[16:36:34 -642202.455849] Model parameter optimization (eps = 10.000000)
[16:37:04 -639135.530332] AUTODETECT spr round 1 (radius: 5)
[16:38:50 -477761.987359] AUTODETECT spr round 2 (radius: 10)
[16:40:41 -378606.351895] AUTODETECT spr round 3 (radius: 15)
[16:42:34 -331461.595723] AUTODETECT spr round 4 (radius: 20)
[16:44:29 -315997.639212] AUTODETECT spr round 5 (radius: 25)
[16:46:51 -301685.708216] SPR radius for FAST iterations: 25 (autodetect)
[16:46:51 -301685.708216] Model parameter optimization (eps = 3.000000)
[16:47:08 -301439.683233] FAST spr round 1 (radius: 25)
[16:50:15 -281672.977910] FAST spr round 2 (radius: 25)
[16:52:47 -280546.699404] FAST spr round 3 (radius: 25)
[16:54:56 -280390.400931] FAST spr round 4 (radius: 25)
[16:56:49 -280366.680447] FAST spr round 5 (radius: 25)
[16:58:31 -280365.111586] FAST spr round 6 (radius: 25)
[17:00:08 -280365.110044] Model parameter optimization (eps = 1.000000)
[17:00:17 -280362.534724] SLOW spr round 1 (radius: 5)
[17:02:17 -280328.879993] SLOW spr round 2 (radius: 5)
[17:04:10 -280326.125608] SLOW spr round 3 (radius: 5)
[17:05:58 -280326.125167] SLOW spr round 4 (radius: 10)
[17:07:58 -280319.472480] SLOW spr round 5 (radius: 5)
[17:10:03 -280314.175757] SLOW spr round 6 (radius: 5)
[17:11:58 -280312.792244] SLOW spr round 7 (radius: 5)
[17:13:50 -280311.807249] SLOW spr round 8 (radius: 5)
[17:15:41 -280311.157323] SLOW spr round 9 (radius: 5)
[17:17:30 -280311.156890] SLOW spr round 10 (radius: 10)
[17:19:27 -280306.793902] SLOW spr round 11 (radius: 5)
[17:21:31 -280304.848642] SLOW spr round 12 (radius: 5)
[17:23:28 -280300.729251] SLOW spr round 13 (radius: 5)
[17:25:19 -280300.728805] SLOW spr round 14 (radius: 10)
[17:27:17 -280297.372195] SLOW spr round 15 (radius: 5)
[17:29:19 -280296.385417] SLOW spr round 16 (radius: 5)
[17:31:14 -280295.609048] SLOW spr round 17 (radius: 5)
[17:33:05 -280295.216681] SLOW spr round 18 (radius: 5)
[17:34:53 -280295.214847] SLOW spr round 19 (radius: 10)
[17:36:49 -280295.214723] SLOW spr round 20 (radius: 15)
[17:40:23 -280286.363099] SLOW spr round 21 (radius: 5)
[17:42:30 -280279.259177] SLOW spr round 22 (radius: 5)
[17:44:28 -280276.213155] SLOW spr round 23 (radius: 5)
[17:46:19 -280276.211907] SLOW spr round 24 (radius: 10)
[17:48:19 -280271.699725] SLOW spr round 25 (radius: 5)
[17:50:21 -280270.614943] SLOW spr round 26 (radius: 5)
[17:52:16 -280269.874443] SLOW spr round 27 (radius: 5)
[17:54:06 -280269.874308] SLOW spr round 28 (radius: 10)
[17:56:04 -280269.874282] SLOW spr round 29 (radius: 15)
[17:59:38 -280269.874276] SLOW spr round 30 (radius: 20)
[18:04:32 -280269.874274] SLOW spr round 31 (radius: 25)
[18:10:01 -280269.874273] Model parameter optimization (eps = 0.100000)

[18:10:08] ML tree search #12, logLikelihood: -280269.762909

[18:10:09 -771377.316014] Initial branch length optimization
[18:10:13 -642319.299495] Model parameter optimization (eps = 10.000000)
[18:10:40 -639308.966434] AUTODETECT spr round 1 (radius: 5)
[18:12:25 -474733.750380] AUTODETECT spr round 2 (radius: 10)
[18:14:17 -369860.317136] AUTODETECT spr round 3 (radius: 15)
[18:16:15 -316550.528468] AUTODETECT spr round 4 (radius: 20)
[18:18:22 -300477.800022] AUTODETECT spr round 5 (radius: 25)
[18:20:35 -296989.840512] SPR radius for FAST iterations: 25 (autodetect)
[18:20:35 -296989.840512] Model parameter optimization (eps = 3.000000)
[18:20:49 -296846.855551] FAST spr round 1 (radius: 25)
[18:23:40 -281712.868451] FAST spr round 2 (radius: 25)
[18:26:06 -280618.414931] FAST spr round 3 (radius: 25)
[18:28:14 -280436.357193] FAST spr round 4 (radius: 25)
[18:30:05 -280414.107400] FAST spr round 5 (radius: 25)
[18:31:48 -280401.868813] FAST spr round 6 (radius: 25)
[18:33:27 -280391.507565] FAST spr round 7 (radius: 25)
[18:35:02 -280388.888873] FAST spr round 8 (radius: 25)
[18:36:34 -280388.886988] Model parameter optimization (eps = 1.000000)
[18:36:45 -280387.046021] SLOW spr round 1 (radius: 5)
[18:38:40 -280320.456013] SLOW spr round 2 (radius: 5)
[18:40:32 -280305.437027] SLOW spr round 3 (radius: 5)
[18:42:24 -280303.260080] SLOW spr round 4 (radius: 5)
[18:44:13 -280303.181299] SLOW spr round 5 (radius: 10)
[18:46:11 -280299.475897] SLOW spr round 6 (radius: 5)
[18:48:13 -280299.413254] SLOW spr round 7 (radius: 10)
[18:50:29 -280299.412830] SLOW spr round 8 (radius: 15)
[18:53:52 -280299.412672] SLOW spr round 9 (radius: 20)
[18:58:28 -280299.412572] SLOW spr round 10 (radius: 25)
[19:04:12 -280299.412508] Model parameter optimization (eps = 0.100000)

[19:04:19] ML tree search #13, logLikelihood: -280299.043373

[19:04:19 -776217.976793] Initial branch length optimization
[19:04:22 -642133.681559] Model parameter optimization (eps = 10.000000)
[19:04:52 -639197.208286] AUTODETECT spr round 1 (radius: 5)
[19:06:36 -468707.555236] AUTODETECT spr round 2 (radius: 10)
[19:08:26 -366103.640927] AUTODETECT spr round 3 (radius: 15)
[19:10:26 -326544.182837] AUTODETECT spr round 4 (radius: 20)
[19:12:28 -309377.866701] AUTODETECT spr round 5 (radius: 25)
[19:14:48 -302091.560239] SPR radius for FAST iterations: 25 (autodetect)
[19:14:48 -302091.560239] Model parameter optimization (eps = 3.000000)
[19:15:06 -301979.036160] FAST spr round 1 (radius: 25)
[19:17:55 -281919.073014] FAST spr round 2 (radius: 25)
[19:20:17 -280643.214311] FAST spr round 3 (radius: 25)
[19:22:22 -280506.059149] FAST spr round 4 (radius: 25)
[19:24:15 -280481.749891] FAST spr round 5 (radius: 25)
[19:25:57 -280475.715162] FAST spr round 6 (radius: 25)
[19:27:36 -280472.893141] FAST spr round 7 (radius: 25)
[19:29:11 -280472.890842] Model parameter optimization (eps = 1.000000)
[19:29:21 -280470.883198] SLOW spr round 1 (radius: 5)
[19:31:17 -280406.620561] SLOW spr round 2 (radius: 5)
[19:33:11 -280384.572804] SLOW spr round 3 (radius: 5)
[19:35:02 -280383.050643] SLOW spr round 4 (radius: 5)
[19:36:49 -280383.048246] SLOW spr round 5 (radius: 10)
[19:38:52 -280366.345447] SLOW spr round 6 (radius: 5)
[19:40:56 -280339.485052] SLOW spr round 7 (radius: 5)
[19:42:54 -280335.939954] SLOW spr round 8 (radius: 5)
[19:44:47 -280332.037741] SLOW spr round 9 (radius: 5)
[19:46:40 -280326.925962] SLOW spr round 10 (radius: 5)
[19:48:28 -280326.647838] SLOW spr round 11 (radius: 5)
[19:50:15 -280326.646993] SLOW spr round 12 (radius: 10)
[19:52:14 -280319.294648] SLOW spr round 13 (radius: 5)
[19:54:16 -280319.006308] SLOW spr round 14 (radius: 5)
[19:56:09 -280319.003281] SLOW spr round 15 (radius: 10)
[19:58:13 -280319.002728] SLOW spr round 16 (radius: 15)
[20:01:47 -280307.465818] SLOW spr round 17 (radius: 5)
[20:03:55 -280303.822966] SLOW spr round 18 (radius: 5)
[20:05:50 -280303.822476] SLOW spr round 19 (radius: 10)
[20:07:57 -280303.284054] SLOW spr round 20 (radius: 5)
[20:09:58 -280303.283858] SLOW spr round 21 (radius: 10)
[20:12:12 -280303.283825] SLOW spr round 22 (radius: 15)
[20:15:43 -280303.283817] SLOW spr round 23 (radius: 20)
[20:20:46 -280301.650381] SLOW spr round 24 (radius: 5)
[20:22:57 -280297.892125] SLOW spr round 25 (radius: 5)
[20:24:55 -280297.305107] SLOW spr round 26 (radius: 5)
[20:26:48 -280295.617190] SLOW spr round 27 (radius: 5)
[20:28:36 -280295.616956] SLOW spr round 28 (radius: 10)
[20:30:36 -280291.420808] SLOW spr round 29 (radius: 5)
[20:32:40 -280287.355118] SLOW spr round 30 (radius: 5)
[20:34:34 -280287.040277] SLOW spr round 31 (radius: 5)
[20:36:27 -280281.964428] SLOW spr round 32 (radius: 5)
[20:38:14 -280281.962062] SLOW spr round 33 (radius: 10)
[20:40:11 -280279.433044] SLOW spr round 34 (radius: 5)
[20:42:12 -280279.383732] SLOW spr round 35 (radius: 10)
[20:44:29 -280279.383521] SLOW spr round 36 (radius: 15)
[20:47:56 -280275.178231] SLOW spr round 37 (radius: 5)
[20:50:03 -280271.946110] SLOW spr round 38 (radius: 5)
[20:51:58 -280271.946065] SLOW spr round 39 (radius: 10)
[20:54:04 -280271.946061] SLOW spr round 40 (radius: 15)
[20:57:36 -280270.381721] SLOW spr round 41 (radius: 5)
[20:59:43 -280268.762634] SLOW spr round 42 (radius: 5)
[21:01:39 -280268.592772] SLOW spr round 43 (radius: 5)
[21:03:29 -280268.591543] SLOW spr round 44 (radius: 10)
[21:05:28 -280268.591502] SLOW spr round 45 (radius: 15)
[21:09:04 -280268.591498] SLOW spr round 46 (radius: 20)
[21:14:01 -280268.591497] SLOW spr round 47 (radius: 25)
[21:19:34 -280268.591497] Model parameter optimization (eps = 0.100000)

[21:19:41] ML tree search #14, logLikelihood: -280268.112836

[21:19:41 -778384.267155] Initial branch length optimization
[21:19:44 -645647.356142] Model parameter optimization (eps = 10.000000)
[21:20:12 -642686.529945] AUTODETECT spr round 1 (radius: 5)
[21:21:56 -483140.379490] AUTODETECT spr round 2 (radius: 10)
[21:23:45 -372785.836512] AUTODETECT spr round 3 (radius: 15)
[21:25:39 -325946.947845] AUTODETECT spr round 4 (radius: 20)
[21:27:37 -307622.691940] AUTODETECT spr round 5 (radius: 25)
[21:29:54 -303073.397008] SPR radius for FAST iterations: 25 (autodetect)
[21:29:54 -303073.397008] Model parameter optimization (eps = 3.000000)
[21:30:09 -302928.822378] FAST spr round 1 (radius: 25)
[21:33:18 -281505.983171] FAST spr round 2 (radius: 25)
[21:35:54 -280542.705876] FAST spr round 3 (radius: 25)
[21:38:01 -280385.071227] FAST spr round 4 (radius: 25)
[21:40:01 -280331.924310] FAST spr round 5 (radius: 25)
[21:41:49 -280305.186804] FAST spr round 6 (radius: 25)
[21:43:25 -280303.234111] FAST spr round 7 (radius: 25)
[21:44:57 -280303.232790] Model parameter optimization (eps = 1.000000)
[21:45:07 -280300.646033] SLOW spr round 1 (radius: 5)
[21:47:02 -280233.058549] SLOW spr round 2 (radius: 5)
[21:48:51 -280231.480228] SLOW spr round 3 (radius: 5)
[21:50:38 -280231.479387] SLOW spr round 4 (radius: 10)
[21:52:36 -280224.815980] SLOW spr round 5 (radius: 5)
[21:54:41 -280214.479010] SLOW spr round 6 (radius: 5)
[21:56:36 -280212.455943] SLOW spr round 7 (radius: 5)
[21:58:26 -280212.129067] SLOW spr round 8 (radius: 5)
[22:00:13 -280212.129039] SLOW spr round 9 (radius: 10)
[22:02:09 -280209.452881] SLOW spr round 10 (radius: 5)
[22:04:11 -280209.138927] SLOW spr round 11 (radius: 5)
[22:06:04 -280209.138317] SLOW spr round 12 (radius: 10)
[22:08:05 -280209.138289] SLOW spr round 13 (radius: 15)
[22:11:22 -280209.138255] SLOW spr round 14 (radius: 20)
[22:16:04 -280209.137991] SLOW spr round 15 (radius: 25)
[22:21:35 -280209.137991] Model parameter optimization (eps = 0.100000)

[22:21:39] ML tree search #15, logLikelihood: -280209.089495

[22:21:39 -775146.524485] Initial branch length optimization
[22:21:42 -645547.752375] Model parameter optimization (eps = 10.000000)
[22:22:11 -642653.005995] AUTODETECT spr round 1 (radius: 5)
[22:23:56 -468634.387508] AUTODETECT spr round 2 (radius: 10)
[22:25:48 -369112.565655] AUTODETECT spr round 3 (radius: 15)
[22:27:46 -321363.520568] AUTODETECT spr round 4 (radius: 20)
[22:30:04 -299265.093563] AUTODETECT spr round 5 (radius: 25)
[22:32:49 -295289.720586] SPR radius for FAST iterations: 25 (autodetect)
[22:32:49 -295289.720586] Model parameter optimization (eps = 3.000000)
[22:33:06 -295129.226951] FAST spr round 1 (radius: 25)
[22:36:01 -281422.275425] FAST spr round 2 (radius: 25)
[22:38:28 -280474.171189] FAST spr round 3 (radius: 25)
[22:40:34 -280356.184581] FAST spr round 4 (radius: 25)
[22:42:24 -280345.147745] FAST spr round 5 (radius: 25)
[22:44:04 -280345.147229] Model parameter optimization (eps = 1.000000)
[22:44:13 -280344.220665] SLOW spr round 1 (radius: 5)
[22:46:10 -280292.361900] SLOW spr round 2 (radius: 5)
[22:48:02 -280288.788017] SLOW spr round 3 (radius: 5)
[22:49:49 -280288.787777] SLOW spr round 4 (radius: 10)
[22:51:46 -280277.683202] SLOW spr round 5 (radius: 5)
[22:53:50 -280270.403033] SLOW spr round 6 (radius: 5)
[22:55:45 -280270.251464] SLOW spr round 7 (radius: 5)
[22:57:34 -280270.250819] SLOW spr round 8 (radius: 10)
[22:59:31 -280270.250793] SLOW spr round 9 (radius: 15)
[23:03:01 -280264.730536] SLOW spr round 10 (radius: 5)
[23:05:06 -280263.540738] SLOW spr round 11 (radius: 5)
[23:07:01 -280263.540205] SLOW spr round 12 (radius: 10)
[23:09:06 -280261.960685] SLOW spr round 13 (radius: 5)
[23:11:09 -280258.642814] SLOW spr round 14 (radius: 5)
[23:13:04 -280258.591168] SLOW spr round 15 (radius: 10)
[23:15:04 -280258.590605] SLOW spr round 16 (radius: 15)
[23:18:33 -280257.150693] SLOW spr round 17 (radius: 5)
[23:20:37 -280257.099526] SLOW spr round 18 (radius: 10)
[23:22:56 -280257.097669] SLOW spr round 19 (radius: 15)
[23:26:17 -280257.097510] SLOW spr round 20 (radius: 20)
[23:31:04 -280257.097491] SLOW spr round 21 (radius: 25)
[23:36:20 -280257.097488] Model parameter optimization (eps = 0.100000)

[23:36:27] ML tree search #16, logLikelihood: -280256.985775

[23:36:27 -773377.406744] Initial branch length optimization
[23:36:30 -638866.853032] Model parameter optimization (eps = 10.000000)
[23:36:55 -635999.518386] AUTODETECT spr round 1 (radius: 5)
[23:38:40 -481348.787974] AUTODETECT spr round 2 (radius: 10)
[23:40:30 -379810.182604] AUTODETECT spr round 3 (radius: 15)
[23:42:28 -324082.043923] AUTODETECT spr round 4 (radius: 20)
[23:44:31 -304816.325506] AUTODETECT spr round 5 (radius: 25)
[23:46:47 -300969.183574] SPR radius for FAST iterations: 25 (autodetect)
[23:46:47 -300969.183574] Model parameter optimization (eps = 3.000000)
[23:47:04 -300840.240044] FAST spr round 1 (radius: 25)
[23:49:58 -281706.246597] FAST spr round 2 (radius: 25)
[23:52:20 -280711.410200] FAST spr round 3 (radius: 25)
[23:54:28 -280474.035940] FAST spr round 4 (radius: 25)
[23:56:26 -280434.919126] FAST spr round 5 (radius: 25)
[23:58:12 -280426.748336] FAST spr round 6 (radius: 25)
[23:59:51 -280422.440648] FAST spr round 7 (radius: 25)
[24:01:30 -280416.104934] FAST spr round 8 (radius: 25)
[24:03:02 -280415.562044] FAST spr round 9 (radius: 25)
[24:04:34 -280415.562020] Model parameter optimization (eps = 1.000000)
[24:04:45 -280412.716527] SLOW spr round 1 (radius: 5)
[24:06:39 -280335.850009] SLOW spr round 2 (radius: 5)
[24:08:31 -280328.837129] SLOW spr round 3 (radius: 5)
[24:10:18 -280328.046323] SLOW spr round 4 (radius: 5)
[24:12:04 -280328.045754] SLOW spr round 5 (radius: 10)
[24:14:03 -280325.169968] SLOW spr round 6 (radius: 5)
[24:16:04 -280324.529696] SLOW spr round 7 (radius: 5)
[24:17:57 -280324.528968] SLOW spr round 8 (radius: 10)
[24:20:02 -280324.528684] SLOW spr round 9 (radius: 15)
[24:23:35 -280321.972418] SLOW spr round 10 (radius: 5)
[24:25:42 -280320.435644] SLOW spr round 11 (radius: 5)
[24:27:37 -280320.434994] SLOW spr round 12 (radius: 10)
[24:29:46 -280320.434921] SLOW spr round 13 (radius: 15)
[24:33:14 -280320.434892] SLOW spr round 14 (radius: 20)
[24:38:10 -280320.434870] SLOW spr round 15 (radius: 25)
[24:44:02 -280320.434850] Model parameter optimization (eps = 0.100000)

[24:44:07] ML tree search #17, logLikelihood: -280320.359556

[24:44:07 -773418.544333] Initial branch length optimization
[24:44:09 -639953.053052] Model parameter optimization (eps = 10.000000)
[24:44:36 -636839.482331] AUTODETECT spr round 1 (radius: 5)
[24:46:21 -473221.424165] AUTODETECT spr round 2 (radius: 10)
[24:48:11 -373088.671425] AUTODETECT spr round 3 (radius: 15)
[24:50:06 -326782.843569] AUTODETECT spr round 4 (radius: 20)
[24:52:16 -303893.359502] AUTODETECT spr round 5 (radius: 25)
[24:54:31 -296858.634416] SPR radius for FAST iterations: 25 (autodetect)
[24:54:31 -296858.634416] Model parameter optimization (eps = 3.000000)
[24:54:49 -296737.223598] FAST spr round 1 (radius: 25)
[24:57:42 -281396.585235] FAST spr round 2 (radius: 25)
[25:00:10 -280575.556591] FAST spr round 3 (radius: 25)
[25:02:13 -280438.728046] FAST spr round 4 (radius: 25)
[25:04:07 -280380.695083] FAST spr round 5 (radius: 25)
[25:05:50 -280371.490759] FAST spr round 6 (radius: 25)
[25:07:26 -280371.490008] Model parameter optimization (eps = 1.000000)
[25:07:35 -280369.759017] SLOW spr round 1 (radius: 5)
[25:09:32 -280298.162400] SLOW spr round 2 (radius: 5)
[25:11:26 -280289.766592] SLOW spr round 3 (radius: 5)
[25:13:19 -280285.822145] SLOW spr round 4 (radius: 5)
[25:15:08 -280285.556581] SLOW spr round 5 (radius: 5)
[25:16:56 -280285.556241] SLOW spr round 6 (radius: 10)
[25:18:57 -280270.726993] SLOW spr round 7 (radius: 5)
[25:21:02 -280260.676147] SLOW spr round 8 (radius: 5)
[25:22:58 -280259.995684] SLOW spr round 9 (radius: 5)
[25:24:48 -280259.922310] SLOW spr round 10 (radius: 10)
[25:26:49 -280258.405996] SLOW spr round 11 (radius: 5)
[25:28:51 -280258.358430] SLOW spr round 12 (radius: 10)
[25:31:05 -280258.358050] SLOW spr round 13 (radius: 15)
[25:34:33 -280243.427115] SLOW spr round 14 (radius: 5)
[25:36:41 -280240.189831] SLOW spr round 15 (radius: 5)
[25:38:37 -280240.111511] SLOW spr round 16 (radius: 10)
[25:40:43 -280240.111350] SLOW spr round 17 (radius: 15)
[25:44:08 -280239.039093] SLOW spr round 18 (radius: 5)
[25:46:12 -280239.037473] SLOW spr round 19 (radius: 10)
[25:48:34 -280239.037015] SLOW spr round 20 (radius: 15)
[25:51:55 -280239.036887] SLOW spr round 21 (radius: 20)
[25:56:47 -280239.036852] SLOW spr round 22 (radius: 25)
[26:02:30 -280239.036842] Model parameter optimization (eps = 0.100000)

[26:02:40] ML tree search #18, logLikelihood: -280238.841863

[26:02:40 -777121.684197] Initial branch length optimization
[26:02:44 -647860.210991] Model parameter optimization (eps = 10.000000)
[26:03:15 -644834.616147] AUTODETECT spr round 1 (radius: 5)
[26:04:59 -486761.432084] AUTODETECT spr round 2 (radius: 10)
[26:06:50 -373077.354895] AUTODETECT spr round 3 (radius: 15)
[26:08:44 -331099.264805] AUTODETECT spr round 4 (radius: 20)
[26:10:50 -311263.778609] AUTODETECT spr round 5 (radius: 25)
[26:13:29 -303510.340905] SPR radius for FAST iterations: 25 (autodetect)
[26:13:29 -303510.340905] Model parameter optimization (eps = 3.000000)
[26:13:46 -303372.156543] FAST spr round 1 (radius: 25)
[26:16:54 -281947.272025] FAST spr round 2 (radius: 25)
[26:19:25 -280574.729894] FAST spr round 3 (radius: 25)
[26:21:34 -280463.278173] FAST spr round 4 (radius: 25)
[26:23:29 -280419.558002] FAST spr round 5 (radius: 25)
[26:25:12 -280396.305379] FAST spr round 6 (radius: 25)
[26:26:50 -280387.443655] FAST spr round 7 (radius: 25)
[26:28:23 -280387.443201] Model parameter optimization (eps = 1.000000)
[26:28:37 -280382.615229] SLOW spr round 1 (radius: 5)
[26:30:34 -280329.527369] SLOW spr round 2 (radius: 5)
[26:32:29 -280316.321758] SLOW spr round 3 (radius: 5)
[26:34:16 -280316.321351] SLOW spr round 4 (radius: 10)
[26:36:13 -280310.813986] SLOW spr round 5 (radius: 5)
[26:38:17 -280296.434437] SLOW spr round 6 (radius: 5)
[26:40:09 -280296.433962] SLOW spr round 7 (radius: 10)
[26:42:10 -280290.193720] SLOW spr round 8 (radius: 5)
[26:44:10 -280285.202017] SLOW spr round 9 (radius: 5)
[26:46:03 -280284.581270] SLOW spr round 10 (radius: 5)
[26:47:51 -280284.581261] SLOW spr round 11 (radius: 10)
[26:49:47 -280284.581260] SLOW spr round 12 (radius: 15)
[26:53:18 -280280.058444] SLOW spr round 13 (radius: 5)
[26:55:22 -280279.478156] SLOW spr round 14 (radius: 5)
[26:57:16 -280279.477791] SLOW spr round 15 (radius: 10)
[26:59:20 -280278.995144] SLOW spr round 16 (radius: 5)
[27:01:19 -280278.809027] SLOW spr round 17 (radius: 5)
[27:03:11 -280278.808339] SLOW spr round 18 (radius: 10)
[27:05:12 -280278.808321] SLOW spr round 19 (radius: 15)
[27:08:42 -280277.557735] SLOW spr round 20 (radius: 5)
[27:10:46 -280276.908483] SLOW spr round 21 (radius: 5)
[27:12:40 -280276.907681] SLOW spr round 22 (radius: 10)
[27:14:43 -280276.907507] SLOW spr round 23 (radius: 15)
[27:18:10 -280276.472564] SLOW spr round 24 (radius: 5)
[27:20:13 -280276.266364] SLOW spr round 25 (radius: 5)
[27:22:07 -280276.266310] SLOW spr round 26 (radius: 10)
[27:24:12 -280274.133152] SLOW spr round 27 (radius: 5)
[27:26:16 -280260.154357] SLOW spr round 28 (radius: 5)
[27:28:12 -280252.070293] SLOW spr round 29 (radius: 5)
[27:30:03 -280251.290436] SLOW spr round 30 (radius: 5)
[27:31:50 -280251.256992] SLOW spr round 31 (radius: 10)
[27:33:46 -280249.897257] SLOW spr round 32 (radius: 5)
[27:35:48 -280248.887446] SLOW spr round 33 (radius: 5)
[27:37:44 -280245.630256] SLOW spr round 34 (radius: 5)
[27:39:32 -280245.630035] SLOW spr round 35 (radius: 10)
[27:41:29 -280245.630024] SLOW spr round 36 (radius: 15)
[27:45:00 -280240.802963] SLOW spr round 37 (radius: 5)
[27:47:04 -280239.629375] SLOW spr round 38 (radius: 5)
[27:48:58 -280239.627708] SLOW spr round 39 (radius: 10)
[27:51:00 -280239.627635] SLOW spr round 40 (radius: 15)
[27:54:25 -280239.627630] SLOW spr round 41 (radius: 20)
[27:59:13 -280239.627629] SLOW spr round 42 (radius: 25)
[28:05:00 -280238.721129] SLOW spr round 43 (radius: 5)
[28:07:07 -280237.290944] SLOW spr round 44 (radius: 5)
[28:09:03 -280237.290930] SLOW spr round 45 (radius: 10)
[28:11:08 -280237.290929] SLOW spr round 46 (radius: 15)
[28:14:32 -280237.290929] SLOW spr round 47 (radius: 20)
[28:19:20 -280237.290928] SLOW spr round 48 (radius: 25)
[28:25:10 -280237.290928] Model parameter optimization (eps = 0.100000)

[28:25:14] ML tree search #19, logLikelihood: -280237.233079

[28:25:15 -773829.119671] Initial branch length optimization
[28:25:17 -640586.578434] Model parameter optimization (eps = 10.000000)
[28:25:42 -637587.651314] AUTODETECT spr round 1 (radius: 5)
[28:27:25 -478068.366372] AUTODETECT spr round 2 (radius: 10)
[28:29:14 -387651.424249] AUTODETECT spr round 3 (radius: 15)
[28:31:08 -338724.014919] AUTODETECT spr round 4 (radius: 20)
[28:33:10 -311670.636095] AUTODETECT spr round 5 (radius: 25)
[28:35:43 -304310.585479] SPR radius for FAST iterations: 25 (autodetect)
[28:35:43 -304310.585479] Model parameter optimization (eps = 3.000000)
[28:36:00 -304221.436974] FAST spr round 1 (radius: 25)
[28:38:58 -281860.626107] FAST spr round 2 (radius: 25)
[28:41:28 -280657.680442] FAST spr round 3 (radius: 25)
[28:43:34 -280473.925581] FAST spr round 4 (radius: 25)
[28:45:31 -280437.731907] FAST spr round 5 (radius: 25)
[28:47:11 -280435.702030] FAST spr round 6 (radius: 25)
[28:48:46 -280435.702014] Model parameter optimization (eps = 1.000000)
[28:48:57 -280424.168783] SLOW spr round 1 (radius: 5)
[28:50:52 -280376.433556] SLOW spr round 2 (radius: 5)
[28:52:43 -280371.544402] SLOW spr round 3 (radius: 5)
[28:54:29 -280371.445808] SLOW spr round 4 (radius: 10)
[28:56:24 -280359.695471] SLOW spr round 5 (radius: 5)
[28:58:27 -280337.015702] SLOW spr round 6 (radius: 5)
[29:00:21 -280333.628558] SLOW spr round 7 (radius: 5)
[29:02:12 -280328.229913] SLOW spr round 8 (radius: 5)
[29:04:00 -280325.278154] SLOW spr round 9 (radius: 5)
[29:05:46 -280320.550600] SLOW spr round 10 (radius: 5)
[29:07:31 -280320.550484] SLOW spr round 11 (radius: 10)
[29:09:23 -280313.839950] SLOW spr round 12 (radius: 5)
[29:11:24 -280311.477599] SLOW spr round 13 (radius: 5)
[29:13:17 -280311.206086] SLOW spr round 14 (radius: 5)
[29:15:04 -280311.202750] SLOW spr round 15 (radius: 10)
[29:16:59 -280310.128469] SLOW spr round 16 (radius: 5)
[29:18:59 -280306.690726] SLOW spr round 17 (radius: 5)
[29:20:51 -280305.114727] SLOW spr round 18 (radius: 5)
[29:22:40 -280304.983191] SLOW spr round 19 (radius: 5)
[29:24:26 -280304.982646] SLOW spr round 20 (radius: 10)
[29:26:19 -280304.982639] SLOW spr round 21 (radius: 15)
[29:29:52 -280299.347406] SLOW spr round 22 (radius: 5)
[29:31:59 -280296.281130] SLOW spr round 23 (radius: 5)
[29:33:55 -280295.329274] SLOW spr round 24 (radius: 5)
[29:35:45 -280293.016600] SLOW spr round 25 (radius: 5)
[29:37:32 -280293.015135] SLOW spr round 26 (radius: 10)
[29:39:26 -280293.014990] SLOW spr round 27 (radius: 15)
[29:42:59 -280293.014961] SLOW spr round 28 (radius: 20)
[29:47:44 -280293.014954] SLOW spr round 29 (radius: 25)
[29:53:21 -280293.014952] Model parameter optimization (eps = 0.100000)

[29:53:30] ML tree search #20, logLikelihood: -280292.843806


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.121452,0.437456) (0.134883,0.492038) (0.439943,0.894614) (0.303723,1.603185) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -280209.089495

AIC score: 564428.178991 / AICc score: 8608488.178991 / BIC score: 572817.397517
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=485).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NGH8/3_mltree/A6NGH8.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NGH8/3_mltree/A6NGH8.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NGH8/3_mltree/A6NGH8.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A6NGH8/3_mltree/A6NGH8.raxml.log

Analysis started: 02-Jul-2021 12:40:18 / finished: 03-Jul-2021 18:33:49

Elapsed time: 107610.917 seconds