RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 06-Jul-2021 03:20:14 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A2A2Z9/2_msa/A2A2Z9_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A2A2Z9/3_mltree/A2A2Z9 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A2A2Z9/2_msa/A2A2Z9_trimmed_msa.fasta
[00:00:00] Loaded alignment with 927 taxa and 59 sites

WARNING: Sequences tr_A0A0J9YUH2_A0A0J9YUH2_MOUSE_10090 and tr_A0A0J9YUZ3_A0A0J9YUZ3_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A1B0GRY3_A0A1B0GRY3_MOUSE_10090 and tr_A5H0M4_A5H0M4_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A1D5RM70_A0A1D5RM70_MOUSE_10090 and tr_D3Z1P8_D3Z1P8_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A1D5RM70_A0A1D5RM70_MOUSE_10090 and tr_E9Q637_E9Q637_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A1D5RM70_A0A1D5RM70_MOUSE_10090 and tr_Q8C646_Q8C646_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_B6QKG3_B6QKG3_TALMQ_441960 and tr_A0A093UUF7_A0A093UUF7_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_A0A2I2YKX4_A0A2I2YKX4_GORGO_9595 and tr_A0A2I3TSF9_A0A2I3TSF9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QCY3_G3QCY3_GORGO_9595 and tr_H2R0V4_H2R0V4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QCY3_G3QCY3_GORGO_9595 and tr_G7PSM8_G7PSM8_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G3QCY3_G3QCY3_GORGO_9595 and tr_A0A2R9BFU1_A0A2R9BFU1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3SDY7_G3SDY7_GORGO_9595 and sp_Q9BXX2_AN30B_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3SF15_G3SF15_GORGO_9595 and tr_A0A2I3SVD9_A0A2I3SVD9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3SF15_G3SF15_GORGO_9595 and sp_Q92527_ANKR7_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3SF15_G3SF15_GORGO_9595 and tr_A0A2R8ZJB4_A0A2R8ZJB4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2NA10_H2NA10_PONAB_9601 and sp_Q9UPS8_ANR26_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2PUE5_H2PUE5_PONAB_9601 and sp_A6NI47_POTEM_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2PUE5_H2PUE5_PONAB_9601 and sp_Q6S545_POTEH_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2PUE5_H2PUE5_PONAB_9601 and sp_Q6S5H5_POTEG_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_B8N9D2_B8N9D2_ASPFN_332952 and tr_Q2UGY0_Q2UGY0_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B8N9D2_B8N9D2_ASPFN_332952 and tr_A0A1S9DZ77_A0A1S9DZ77_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_B8NAF0_B8NAF0_ASPFN_332952 and tr_A0A1S9DC68_A0A1S9DC68_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_B8NHI2_B8NHI2_ASPFN_332952 and tr_Q2UFD3_Q2UFD3_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B8NHI2_B8NHI2_ASPFN_332952 and tr_A0A1S9E0Y6_A0A1S9E0Y6_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_B8NLX6_B8NLX6_ASPFN_332952 and tr_Q2U5Y3_Q2U5Y3_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B8NLX6_B8NLX6_ASPFN_332952 and tr_A0A1S9D886_A0A1S9D886_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_B8NP47_B8NP47_ASPFN_332952 and tr_Q2UN28_Q2UN28_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B8NP47_B8NP47_ASPFN_332952 and tr_A0A1S9D6L7_A0A1S9D6L7_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_A0A2I3RTV5_A0A2I3RTV5_PANTR_9598 and sp_A6QL64_AN36A_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3RTV5_A0A2I3RTV5_PANTR_9598 and sp_Q8N2N9_AN36B_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3RV68_A0A2I3RV68_PANTR_9598 and tr_H2QXB0_H2QXB0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3RYB5_A0A2I3RYB5_PANTR_9598 and tr_H2QW47_H2QW47_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3RYB5_A0A2I3RYB5_PANTR_9598 and sp_A5A3E0_POTEF_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3RYB5_A0A2I3RYB5_PANTR_9598 and sp_Q6S8J3_POTEE_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3RYB5_A0A2I3RYB5_PANTR_9598 and tr_A0A2R9BFN4_A0A2R9BFN4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3TX65_A0A2I3TX65_PANTR_9598 and tr_A0A2R9B0Y1_A0A2R9B0Y1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2Q1R5_H2Q1R5_PANTR_9598 and tr_A0A2R9CCJ6_A0A2R9CCJ6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2Q1R9_H2Q1R9_PANTR_9598 and sp_Q9BXX3_AN30A_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2Q1R9_H2Q1R9_PANTR_9598 and tr_A0A2R8Z9E1_A0A2R8Z9E1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2Q911_H2Q911_PANTR_9598 and tr_H2R3T8_H2R3T8_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H2R2I9_H2R2I9_PANTR_9598 and sp_A0JP26_POTB3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2R2I9_H2R2I9_PANTR_9598 and sp_Q86YR6_POTED_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H9H6M8_H9H6M8_MONDO_13616 and tr_H9H7J5_H9H7J5_MONDO_13616 are exactly identical!
WARNING: Sequences tr_E9FBL7_E9FBL7_METRA_655844 and tr_A0A0B4GGJ3_A0A0B4GGJ3_METMF_1276143 are exactly identical!
WARNING: Sequences tr_E9FBL7_E9FBL7_METRA_655844 and tr_A0A0B4IJM0_A0A0B4IJM0_METMF_1276143 are exactly identical!
WARNING: Sequences sp_A0A0A6YYL3_POTEB_HUMAN_9606 and sp_H3BUK9_POTB2_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P0CG38_POTEI_HUMAN_9606 and sp_P0CG39_POTEJ_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q4UJ75_A20A4_HUMAN_9606 and sp_Q5SQ80_A20A2_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q4UJ75_A20A4_HUMAN_9606 and sp_Q5VUR7_A20A3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_Q2U8J9_Q2U8J9_ASPOR_510516 and tr_A0A1S9DAM5_A0A1S9DAM5_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_A1DK50_A1DK50_NEOFI_331117 and tr_A0A0S7DK54_A0A0S7DK54_9EURO_293939 are exactly identical!
WARNING: Sequences tr_A0A1D5QJP5_A0A1D5QJP5_MACMU_9544 and tr_A0A096MVX0_A0A096MVX0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5QJP5_A0A1D5QJP5_MACMU_9544 and tr_A0A0D9REH1_A0A0D9REH1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5QJP5_A0A1D5QJP5_MACMU_9544 and tr_A0A2K5KKK9_A0A2K5KKK9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5QJP5_A0A1D5QJP5_MACMU_9544 and tr_A0A2K6BGE0_A0A2K6BGE0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5R5T7_A0A1D5R5T7_MACMU_9544 and tr_A0A2K5L776_A0A2K5L776_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6YIC2_F6YIC2_MACMU_9544 and tr_G7PSS5_G7PSS5_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6YRT5_F6YRT5_MACMU_9544 and tr_A0A2K6BMD6_A0A2K6BMD6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7EQ89_F7EQ89_MACMU_9544 and tr_A0A2K6DX39_A0A2K6DX39_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7FM70_F7FM70_MACMU_9544 and tr_A0A2I3MUY7_A0A2I3MUY7_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7FM70_F7FM70_MACMU_9544 and tr_A0A0D9RFY7_A0A0D9RFY7_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7FM70_F7FM70_MACMU_9544 and tr_A0A2K6BC05_A0A2K6BC05_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G7XBG0_G7XBG0_ASPKW_1033177 and tr_A0A146FD03_A0A146FD03_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_G5BNP6_G5BNP6_HETGA_10181 and tr_G5C618_G5C618_HETGA_10181 are exactly identical!
WARNING: Sequences tr_H0YQS2_H0YQS2_TAEGU_59729 and tr_U3JLN1_U3JLN1_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0YQS2_H0YQS2_TAEGU_59729 and tr_A0A091F0K4_A0A091F0K4_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0YQS2_H0YQS2_TAEGU_59729 and tr_A0A218UNT5_A0A218UNT5_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F2SLZ7_F2SLZ7_TRIRC_559305 and tr_D4AWU4_D4AWU4_ARTBC_663331 are exactly identical!
WARNING: Sequences tr_F2SLZ7_F2SLZ7_TRIRC_559305 and tr_A0A178ER16_A0A178ER16_TRIRU_5551 are exactly identical!
WARNING: Sequences tr_G7PWC3_G7PWC3_MACFA_9541 and tr_A0A2K5MNE3_A0A2K5MNE3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G7PWC3_G7PWC3_MACFA_9541 and tr_A0A2K6C8C2_A0A2K6C8C2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G8F415_G8F415_MACFA_9541 and tr_A0A0D9RFQ1_A0A0D9RFQ1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M4DLK4_M4DLK4_BRARP_51351 and tr_A0A078I827_A0A078I827_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4DLK4_M4DLK4_BRARP_51351 and tr_A0A0D3E7P7_A0A0D3E7P7_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A096MSA4_A0A096MSA4_PAPAN_9555 and tr_A0A2I3M3J6_A0A2I3M3J6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A096MSA4_A0A096MSA4_PAPAN_9555 and tr_A0A2I3MBH0_A0A2I3MBH0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A096NU28_A0A096NU28_PAPAN_9555 and tr_A0A2K5YCK5_A0A2K5YCK5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I3LLQ6_A0A2I3LLQ6_PAPAN_9555 and tr_A0A0D9RHS0_A0A0D9RHS0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I3LPA8_A0A2I3LPA8_PAPAN_9555 and tr_A0A2K5MNQ1_A0A2K5MNQ1_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3LPA8_A0A2I3LPA8_PAPAN_9555 and tr_A0A2K5XAD7_A0A2K5XAD7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I3MZ42_A0A2I3MZ42_PAPAN_9555 and tr_A0A2K6DSZ1_A0A2K6DSZ1_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I3MZ42_A0A2I3MZ42_PAPAN_9555 and tr_A0A2K5XZW8_A0A2K5XZW8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I3ND06_A0A2I3ND06_PAPAN_9555 and tr_A0A2K5L7L9_A0A2K5L7L9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A0K8KZF7_A0A0K8KZF7_9EURO_91492 and tr_A0A229XAS4_A0A229XAS4_9EURO_1245748 are exactly identical!
WARNING: Sequences tr_A0A151N6H0_A0A151N6H0_ALLMI_8496 and tr_A0A1U8DQ04_A0A1U8DQ04_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151PHX2_A0A151PHX2_ALLMI_8496 and tr_A0A3Q0HNB7_A0A3Q0HNB7_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A194VNY9_A0A194VNY9_9PEZI_105487 and tr_A0A194VDK4_A0A194VDK4_9PEZI_694573 are exactly identical!
WARNING: Sequences tr_A0A1S3YNV5_A0A1S3YNV5_TOBAC_4097 and tr_A0A314KQE7_A0A314KQE7_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S4APP5_A0A1S4APP5_TOBAC_4097 and tr_A0A1U7VUI0_A0A1U7VUI0_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3KL71_A0A1S3KL71_SALSA_8030 and tr_A0A060X912_A0A060X912_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A2K5LSN6_A0A2K5LSN6_CERAT_9531 and tr_A0A2K5Y6T2_A0A2K5Y6T2_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2U3V8K6_A0A2U3V8K6_TURTR_9739 and tr_A0A2Y9PC31_A0A2Y9PC31_DELLE_9749 are exactly identical!
WARNING: Duplicate sequences found: 91

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A2A2Z9/3_mltree/A2A2Z9.raxml.reduced.phy

Alignment comprises 1 partitions and 59 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 59 / 59
Gaps: 6.31 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A2A2Z9/3_mltree/A2A2Z9.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 927 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 59 / 4720
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -98089.943939] Initial branch length optimization
[00:00:01 -82604.755201] Model parameter optimization (eps = 10.000000)
[00:00:26 -82415.755122] AUTODETECT spr round 1 (radius: 5)
[00:01:28 -67774.630740] AUTODETECT spr round 2 (radius: 10)
[00:02:39 -55937.496948] AUTODETECT spr round 3 (radius: 15)
[00:03:55 -49981.383164] AUTODETECT spr round 4 (radius: 20)
[00:05:24 -47095.082368] AUTODETECT spr round 5 (radius: 25)
[00:07:07 -46125.663423] SPR radius for FAST iterations: 25 (autodetect)
[00:07:07 -46125.663423] Model parameter optimization (eps = 3.000000)
[00:07:16 -46017.244810] FAST spr round 1 (radius: 25)
[00:08:57 -42864.056526] FAST spr round 2 (radius: 25)
[00:10:17 -42441.256628] FAST spr round 3 (radius: 25)
[00:11:24 -42397.358795] FAST spr round 4 (radius: 25)
[00:12:25 -42388.574049] FAST spr round 5 (radius: 25)
[00:13:23 -42378.481092] FAST spr round 6 (radius: 25)
[00:14:19 -42373.332165] FAST spr round 7 (radius: 25)
[00:15:14 -42373.034365] FAST spr round 8 (radius: 25)
[00:16:08 -42373.034150] Model parameter optimization (eps = 1.000000)
[00:16:14 -42371.260879] SLOW spr round 1 (radius: 5)
[00:17:23 -42357.258949] SLOW spr round 2 (radius: 5)
[00:18:30 -42356.865961] SLOW spr round 3 (radius: 5)
[00:19:34 -42356.865857] SLOW spr round 4 (radius: 10)
[00:20:43 -42352.374581] SLOW spr round 5 (radius: 5)
[00:22:02 -42348.070117] SLOW spr round 6 (radius: 5)
[00:23:14 -42347.379885] SLOW spr round 7 (radius: 5)
[00:24:23 -42347.367897] SLOW spr round 8 (radius: 10)
[00:25:34 -42339.891132] SLOW spr round 9 (radius: 5)
[00:26:53 -42338.552633] SLOW spr round 10 (radius: 5)
[00:28:05 -42337.966420] SLOW spr round 11 (radius: 5)
[00:29:13 -42337.964908] SLOW spr round 12 (radius: 10)
[00:30:20 -42337.964028] SLOW spr round 13 (radius: 15)
[00:32:07 -42335.256347] SLOW spr round 14 (radius: 5)
[00:33:25 -42335.248438] SLOW spr round 15 (radius: 10)
[00:34:41 -42335.247709] SLOW spr round 16 (radius: 15)
[00:36:20 -42334.572655] SLOW spr round 17 (radius: 5)
[00:37:40 -42333.862869] SLOW spr round 18 (radius: 5)
[00:38:52 -42333.861994] SLOW spr round 19 (radius: 10)
[00:40:01 -42333.861703] SLOW spr round 20 (radius: 15)
[00:41:44 -42333.458004] SLOW spr round 21 (radius: 5)
[00:43:02 -42333.457994] SLOW spr round 22 (radius: 10)
[00:44:17 -42333.457993] SLOW spr round 23 (radius: 15)
[00:45:55 -42333.457993] SLOW spr round 24 (radius: 20)
[00:47:54 -42329.018343] SLOW spr round 25 (radius: 5)
[00:49:15 -42325.047860] SLOW spr round 26 (radius: 5)
[00:50:28 -42323.416029] SLOW spr round 27 (radius: 5)
[00:51:35 -42323.415918] SLOW spr round 28 (radius: 10)
[00:52:43 -42321.656094] SLOW spr round 29 (radius: 5)
[00:54:00 -42318.728745] SLOW spr round 30 (radius: 5)
[00:55:11 -42318.728716] SLOW spr round 31 (radius: 10)
[00:56:20 -42318.728716] SLOW spr round 32 (radius: 15)
[00:58:03 -42318.728716] SLOW spr round 33 (radius: 20)
[01:00:01 -42318.728715] SLOW spr round 34 (radius: 25)
[01:01:56 -42318.580929] SLOW spr round 35 (radius: 5)
[01:03:17 -42318.580825] SLOW spr round 36 (radius: 10)
[01:04:36 -42318.580824] SLOW spr round 37 (radius: 15)
[01:06:14 -42318.419992] SLOW spr round 38 (radius: 5)
[01:07:34 -42317.080339] SLOW spr round 39 (radius: 5)
[01:08:46 -42317.078640] SLOW spr round 40 (radius: 10)
[01:09:56 -42317.078580] SLOW spr round 41 (radius: 15)
[01:11:38 -42314.865922] SLOW spr round 42 (radius: 5)
[01:12:57 -42314.865842] SLOW spr round 43 (radius: 10)
[01:14:13 -42314.865841] SLOW spr round 44 (radius: 15)
[01:15:52 -42314.865841] SLOW spr round 45 (radius: 20)
[01:17:51 -42314.865841] SLOW spr round 46 (radius: 25)
[01:19:47 -42314.865841] Model parameter optimization (eps = 0.100000)

[01:19:52] ML tree search #1, logLikelihood: -42314.798812

[01:19:52 -98236.550279] Initial branch length optimization
[01:19:53 -82403.923370] Model parameter optimization (eps = 10.000000)
[01:20:07 -82283.882057] AUTODETECT spr round 1 (radius: 5)
[01:21:09 -68788.083076] AUTODETECT spr round 2 (radius: 10)
[01:22:21 -57079.519237] AUTODETECT spr round 3 (radius: 15)
[01:23:39 -51393.375728] AUTODETECT spr round 4 (radius: 20)
[01:24:56 -49568.790445] AUTODETECT spr round 5 (radius: 25)
[01:26:20 -48892.384053] SPR radius for FAST iterations: 25 (autodetect)
[01:26:20 -48892.384053] Model parameter optimization (eps = 3.000000)
[01:26:30 -48742.447287] FAST spr round 1 (radius: 25)
[01:28:04 -45073.824228] FAST spr round 2 (radius: 25)
[01:29:19 -44808.678817] FAST spr round 3 (radius: 25)
[01:30:27 -44706.007029] FAST spr round 4 (radius: 25)
[01:31:28 -44692.885168] FAST spr round 5 (radius: 25)
[01:32:26 -44685.331214] FAST spr round 6 (radius: 25)
[01:33:22 -44685.330382] Model parameter optimization (eps = 1.000000)
[01:33:27 -44681.699928] SLOW spr round 1 (radius: 5)
[01:34:38 -44670.545568] SLOW spr round 2 (radius: 5)
[01:35:47 -44668.877421] SLOW spr round 3 (radius: 5)
[01:36:53 -44668.876814] SLOW spr round 4 (radius: 10)
[01:38:02 -44661.747659] SLOW spr round 5 (radius: 5)
[01:39:20 -44652.874485] SLOW spr round 6 (radius: 5)
[01:40:32 -44649.440736] SLOW spr round 7 (radius: 5)
[01:41:40 -44649.440005] SLOW spr round 8 (radius: 10)
[01:42:47 -44648.540295] SLOW spr round 9 (radius: 5)
[01:44:03 -44648.411737] SLOW spr round 10 (radius: 5)
[01:45:12 -44648.411139] SLOW spr round 11 (radius: 10)
[01:46:20 -44647.913446] SLOW spr round 12 (radius: 5)
[01:47:35 -44647.913288] SLOW spr round 13 (radius: 10)
[01:48:46 -44646.641681] SLOW spr round 14 (radius: 5)
[01:50:02 -44643.275257] SLOW spr round 15 (radius: 5)
[01:51:13 -44633.451403] SLOW spr round 16 (radius: 5)
[01:52:21 -44632.429003] SLOW spr round 17 (radius: 5)
[01:53:27 -44631.278019] SLOW spr round 18 (radius: 5)
[01:54:32 -44629.444528] SLOW spr round 19 (radius: 5)
[01:55:37 -44627.474998] SLOW spr round 20 (radius: 5)
[01:56:42 -44627.474982] SLOW spr round 21 (radius: 10)
[01:57:47 -44625.492928] SLOW spr round 22 (radius: 5)
[01:59:06 -44624.338982] SLOW spr round 23 (radius: 5)
[02:00:17 -44624.338609] SLOW spr round 24 (radius: 10)
[02:01:25 -44623.457285] SLOW spr round 25 (radius: 5)
[02:02:41 -44623.245633] SLOW spr round 26 (radius: 5)
[02:03:51 -44622.636591] SLOW spr round 27 (radius: 5)
[02:04:58 -44622.634962] SLOW spr round 28 (radius: 10)
[02:06:04 -44622.302830] SLOW spr round 29 (radius: 5)
[02:07:20 -44622.302082] SLOW spr round 30 (radius: 10)
[02:08:31 -44620.800914] SLOW spr round 31 (radius: 5)
[02:09:46 -44620.638972] SLOW spr round 32 (radius: 5)
[02:10:55 -44620.638949] SLOW spr round 33 (radius: 10)
[02:12:02 -44620.611631] SLOW spr round 34 (radius: 15)
[02:13:35 -44608.018256] SLOW spr round 35 (radius: 5)
[02:14:54 -44605.865695] SLOW spr round 36 (radius: 5)
[02:16:05 -44605.865194] SLOW spr round 37 (radius: 10)
[02:17:13 -44605.865088] SLOW spr round 38 (radius: 15)
[02:18:45 -44604.077044] SLOW spr round 39 (radius: 5)
[02:20:03 -44603.922676] SLOW spr round 40 (radius: 5)
[02:21:14 -44602.623476] SLOW spr round 41 (radius: 5)
[02:22:21 -44602.623473] SLOW spr round 42 (radius: 10)
[02:23:27 -44602.623473] SLOW spr round 43 (radius: 15)
[02:24:59 -44602.623473] SLOW spr round 44 (radius: 20)
[02:26:46 -44596.139982] SLOW spr round 45 (radius: 5)
[02:28:05 -44596.139615] SLOW spr round 46 (radius: 10)
[02:29:21 -44594.959209] SLOW spr round 47 (radius: 5)
[02:30:37 -44594.463263] SLOW spr round 48 (radius: 5)
[02:31:47 -44594.462829] SLOW spr round 49 (radius: 10)
[02:32:54 -44593.889685] SLOW spr round 50 (radius: 5)
[02:34:11 -44593.430549] SLOW spr round 51 (radius: 5)
[02:35:21 -44593.430353] SLOW spr round 52 (radius: 10)
[02:36:28 -44593.430352] SLOW spr round 53 (radius: 15)
[02:38:00 -44591.319568] SLOW spr round 54 (radius: 5)
[02:39:18 -44588.198550] SLOW spr round 55 (radius: 5)
[02:40:29 -44588.198103] SLOW spr round 56 (radius: 10)
[02:41:37 -44588.061224] SLOW spr round 57 (radius: 5)
[02:42:52 -44588.061211] SLOW spr round 58 (radius: 10)
[02:44:02 -44587.961607] SLOW spr round 59 (radius: 15)
[02:45:30 -44587.961596] SLOW spr round 60 (radius: 20)
[02:47:15 -44587.687609] SLOW spr round 61 (radius: 5)
[02:48:33 -44587.687313] SLOW spr round 62 (radius: 10)
[02:49:47 -44585.913627] SLOW spr round 63 (radius: 5)
[02:51:02 -44585.736435] SLOW spr round 64 (radius: 5)
[02:52:10 -44585.736424] SLOW spr round 65 (radius: 10)
[02:53:16 -44585.736424] SLOW spr round 66 (radius: 15)
[02:54:47 -44585.736424] SLOW spr round 67 (radius: 20)
[02:56:31 -44585.736424] SLOW spr round 68 (radius: 25)
[02:58:24 -44584.970542] SLOW spr round 69 (radius: 5)
[02:59:43 -44583.389006] SLOW spr round 70 (radius: 5)
[03:00:54 -44583.388839] SLOW spr round 71 (radius: 10)
[03:02:01 -44583.388833] SLOW spr round 72 (radius: 15)
[03:03:30 -44583.388831] SLOW spr round 73 (radius: 20)
[03:05:13 -44583.388831] SLOW spr round 74 (radius: 25)
[03:07:06 -44583.388831] Model parameter optimization (eps = 0.100000)

[03:07:10] ML tree search #2, logLikelihood: -44583.118331

[03:07:10 -98172.135933] Initial branch length optimization
[03:07:11 -82710.423994] Model parameter optimization (eps = 10.000000)
[03:07:25 -82555.682604] AUTODETECT spr round 1 (radius: 5)
[03:08:26 -68465.214675] AUTODETECT spr round 2 (radius: 10)
[03:09:38 -55645.340196] AUTODETECT spr round 3 (radius: 15)
[03:10:59 -51199.942703] AUTODETECT spr round 4 (radius: 20)
[03:12:38 -49088.421346] AUTODETECT spr round 5 (radius: 25)
[03:14:25 -47603.320279] SPR radius for FAST iterations: 25 (autodetect)
[03:14:25 -47603.320279] Model parameter optimization (eps = 3.000000)
[03:14:37 -47478.295225] FAST spr round 1 (radius: 25)
[03:16:27 -42809.361682] FAST spr round 2 (radius: 25)
[03:17:51 -42458.957550] FAST spr round 3 (radius: 25)
[03:19:04 -42317.746827] FAST spr round 4 (radius: 25)
[03:20:13 -42302.191576] FAST spr round 5 (radius: 25)
[03:21:13 -42299.709779] FAST spr round 6 (radius: 25)
[03:22:10 -42299.707813] Model parameter optimization (eps = 1.000000)
[03:22:22 -42296.956934] SLOW spr round 1 (radius: 5)
[03:23:32 -42281.942517] SLOW spr round 2 (radius: 5)
[03:24:42 -42272.409117] SLOW spr round 3 (radius: 5)
[03:25:54 -42270.158678] SLOW spr round 4 (radius: 5)
[03:27:06 -42268.509030] SLOW spr round 5 (radius: 5)
[03:28:17 -42268.506933] SLOW spr round 6 (radius: 10)
[03:29:28 -42267.417260] SLOW spr round 7 (radius: 5)
[03:30:47 -42267.417116] SLOW spr round 8 (radius: 10)
[03:32:03 -42264.710644] SLOW spr round 9 (radius: 5)
[03:33:19 -42264.710057] SLOW spr round 10 (radius: 10)
[03:34:34 -42264.493898] SLOW spr round 11 (radius: 5)
[03:35:50 -42264.493339] SLOW spr round 12 (radius: 10)
[03:37:04 -42264.283393] SLOW spr round 13 (radius: 5)
[03:38:22 -42264.280875] SLOW spr round 14 (radius: 10)
[03:39:41 -42264.212818] SLOW spr round 15 (radius: 15)
[03:41:28 -42262.265816] SLOW spr round 16 (radius: 5)
[03:42:52 -42260.479895] SLOW spr round 17 (radius: 5)
[03:44:08 -42260.479291] SLOW spr round 18 (radius: 10)
[03:45:22 -42260.479246] SLOW spr round 19 (radius: 15)
[03:47:12 -42258.507790] SLOW spr round 20 (radius: 5)
[03:48:36 -42254.933251] SLOW spr round 21 (radius: 5)
[03:49:51 -42254.593207] SLOW spr round 22 (radius: 5)
[03:51:01 -42254.592255] SLOW spr round 23 (radius: 10)
[03:52:09 -42253.304570] SLOW spr round 24 (radius: 5)
[03:53:24 -42253.304387] SLOW spr round 25 (radius: 10)
[03:54:38 -42252.347923] SLOW spr round 26 (radius: 5)
[03:55:54 -42251.612138] SLOW spr round 27 (radius: 5)
[03:57:04 -42251.611977] SLOW spr round 28 (radius: 10)
[03:58:15 -42251.611976] SLOW spr round 29 (radius: 15)
[04:00:08 -42248.518973] SLOW spr round 30 (radius: 5)
[04:01:31 -42247.805645] SLOW spr round 31 (radius: 5)
[04:02:47 -42247.805628] SLOW spr round 32 (radius: 10)
[04:04:02 -42247.293715] SLOW spr round 33 (radius: 5)
[04:05:23 -42247.275532] SLOW spr round 34 (radius: 10)
[04:06:41 -42247.275155] SLOW spr round 35 (radius: 15)
[04:08:29 -42244.995779] SLOW spr round 36 (radius: 5)
[04:09:52 -42243.655867] SLOW spr round 37 (radius: 5)
[04:11:07 -42243.655842] SLOW spr round 38 (radius: 10)
[04:12:18 -42243.655840] SLOW spr round 39 (radius: 15)
[04:14:02 -42243.655839] SLOW spr round 40 (radius: 20)
[04:16:16 -42242.547751] SLOW spr round 41 (radius: 5)
[04:17:43 -42240.026839] SLOW spr round 42 (radius: 5)
[04:19:00 -42240.025981] SLOW spr round 43 (radius: 10)
[04:20:17 -42239.145438] SLOW spr round 44 (radius: 5)
[04:21:37 -42239.073909] SLOW spr round 45 (radius: 10)
[04:22:52 -42239.073909] SLOW spr round 46 (radius: 15)
[04:24:33 -42239.073909] SLOW spr round 47 (radius: 20)
[04:26:40 -42239.073909] SLOW spr round 48 (radius: 25)
[04:28:53 -42235.835920] SLOW spr round 49 (radius: 5)
[04:30:17 -42234.474290] SLOW spr round 50 (radius: 5)
[04:31:34 -42234.474265] SLOW spr round 51 (radius: 10)
[04:32:49 -42234.474263] SLOW spr round 52 (radius: 15)
[04:34:32 -42234.474263] SLOW spr round 53 (radius: 20)
[04:36:37 -42234.474263] SLOW spr round 54 (radius: 25)
[04:38:54 -42233.951855] SLOW spr round 55 (radius: 5)
[04:40:20 -42231.370492] SLOW spr round 56 (radius: 5)
[04:41:36 -42231.367944] SLOW spr round 57 (radius: 10)
[04:42:51 -42231.367602] SLOW spr round 58 (radius: 15)
[04:44:41 -42231.367563] SLOW spr round 59 (radius: 20)
[04:46:54 -42231.367558] SLOW spr round 60 (radius: 25)
[04:49:09 -42231.284412] Model parameter optimization (eps = 0.100000)

[04:49:14] ML tree search #3, logLikelihood: -42230.928536

[04:49:14 -97677.807180] Initial branch length optimization
[04:49:15 -82297.294158] Model parameter optimization (eps = 10.000000)
[04:49:27 -82164.590734] AUTODETECT spr round 1 (radius: 5)
[04:50:29 -68452.558706] AUTODETECT spr round 2 (radius: 10)
[04:51:45 -55408.473099] AUTODETECT spr round 3 (radius: 15)
[04:53:04 -50382.443331] AUTODETECT spr round 4 (radius: 20)
[04:54:42 -49078.042057] AUTODETECT spr round 5 (radius: 25)
[04:56:27 -47305.189856] SPR radius for FAST iterations: 25 (autodetect)
[04:56:27 -47305.189856] Model parameter optimization (eps = 3.000000)
[04:56:37 -47166.500189] FAST spr round 1 (radius: 25)
[04:58:32 -43125.508612] FAST spr round 2 (radius: 25)
[04:59:56 -42781.627441] FAST spr round 3 (radius: 25)
[05:01:09 -42618.752383] FAST spr round 4 (radius: 25)
[05:02:14 -42600.089430] FAST spr round 5 (radius: 25)
[05:03:17 -42591.022537] FAST spr round 6 (radius: 25)
[05:04:16 -42590.044242] FAST spr round 7 (radius: 25)
[05:05:14 -42590.044234] Model parameter optimization (eps = 1.000000)
[05:05:20 -42587.849991] SLOW spr round 1 (radius: 5)
[05:06:33 -42577.108258] SLOW spr round 2 (radius: 5)
[05:07:44 -42573.631750] SLOW spr round 3 (radius: 5)
[05:08:55 -42573.325825] SLOW spr round 4 (radius: 5)
[05:10:03 -42573.325262] SLOW spr round 5 (radius: 10)
[05:11:13 -42571.945020] SLOW spr round 6 (radius: 5)
[05:12:29 -42571.831517] SLOW spr round 7 (radius: 5)
[05:13:40 -42571.831501] SLOW spr round 8 (radius: 10)
[05:14:49 -42571.094440] SLOW spr round 9 (radius: 5)
[05:16:05 -42571.094437] SLOW spr round 10 (radius: 10)
[05:17:19 -42568.925567] SLOW spr round 11 (radius: 5)
[05:18:36 -42568.251078] SLOW spr round 12 (radius: 5)
[05:19:50 -42568.251022] SLOW spr round 13 (radius: 10)
[05:21:01 -42568.251019] SLOW spr round 14 (radius: 15)
[05:22:46 -42565.498416] SLOW spr round 15 (radius: 5)
[05:24:09 -42563.203922] SLOW spr round 16 (radius: 5)
[05:25:23 -42562.872196] SLOW spr round 17 (radius: 5)
[05:26:31 -42562.872125] SLOW spr round 18 (radius: 10)
[05:27:37 -42562.872123] SLOW spr round 19 (radius: 15)
[05:29:17 -42562.691294] SLOW spr round 20 (radius: 5)
[05:30:35 -42562.691243] SLOW spr round 21 (radius: 10)
[05:31:54 -42562.691239] SLOW spr round 22 (radius: 15)
[05:33:33 -42562.649705] SLOW spr round 23 (radius: 20)
[05:35:38 -42551.083274] SLOW spr round 24 (radius: 5)
[05:37:00 -42547.836623] SLOW spr round 25 (radius: 5)
[05:38:16 -42541.927524] SLOW spr round 26 (radius: 5)
[05:39:26 -42541.503176] SLOW spr round 27 (radius: 5)
[05:40:32 -42541.263004] SLOW spr round 28 (radius: 5)
[05:41:38 -42541.261677] SLOW spr round 29 (radius: 10)
[05:42:43 -42541.261497] SLOW spr round 30 (radius: 15)
[05:44:31 -42541.261466] SLOW spr round 31 (radius: 20)
[05:46:33 -42540.651484] SLOW spr round 32 (radius: 5)
[05:47:56 -42540.596694] SLOW spr round 33 (radius: 10)
[05:49:17 -42540.596391] SLOW spr round 34 (radius: 15)
[05:50:56 -42540.596378] SLOW spr round 35 (radius: 20)
[05:52:59 -42540.038918] SLOW spr round 36 (radius: 5)
[05:54:21 -42540.004579] SLOW spr round 37 (radius: 10)
[05:55:42 -42540.003001] SLOW spr round 38 (radius: 15)
[05:57:17 -42540.002951] SLOW spr round 39 (radius: 20)
[05:59:13 -42443.361641] SLOW spr round 40 (radius: 5)
[06:00:31 -42443.360439] SLOW spr round 41 (radius: 10)
[06:01:50 -42443.360419] SLOW spr round 42 (radius: 15)
[06:03:30 -42443.360415] SLOW spr round 43 (radius: 20)
[06:05:31 -42443.360412] SLOW spr round 44 (radius: 25)
[06:07:32 -42443.308050] Model parameter optimization (eps = 0.100000)

[06:07:36] ML tree search #4, logLikelihood: -42443.062679

[06:07:36 -98143.766319] Initial branch length optimization
[06:07:37 -82450.453532] Model parameter optimization (eps = 10.000000)
[06:07:52 -82313.086506] AUTODETECT spr round 1 (radius: 5)
[06:08:54 -67078.221464] AUTODETECT spr round 2 (radius: 10)
[06:10:08 -56021.251495] AUTODETECT spr round 3 (radius: 15)
[06:11:30 -49114.514096] AUTODETECT spr round 4 (radius: 20)
[06:12:55 -46963.735978] AUTODETECT spr round 5 (radius: 25)
[06:14:27 -46515.041521] SPR radius for FAST iterations: 25 (autodetect)
[06:14:27 -46515.041521] Model parameter optimization (eps = 3.000000)
[06:14:35 -46408.074386] FAST spr round 1 (radius: 25)
[06:16:19 -43192.106500] FAST spr round 2 (radius: 25)
[06:17:40 -42862.581758] FAST spr round 3 (radius: 25)
[06:18:48 -42817.151210] FAST spr round 4 (radius: 25)
[06:19:52 -42804.436728] FAST spr round 5 (radius: 25)
[06:20:52 -42801.894418] FAST spr round 6 (radius: 25)
[06:21:49 -42801.894055] Model parameter optimization (eps = 1.000000)
[06:21:55 -42795.623177] SLOW spr round 1 (radius: 5)
[06:23:09 -42786.552672] SLOW spr round 2 (radius: 5)
[06:24:21 -42783.921667] SLOW spr round 3 (radius: 5)
[06:25:31 -42783.921447] SLOW spr round 4 (radius: 10)
[06:26:40 -42782.031080] SLOW spr round 5 (radius: 5)
[06:28:01 -42780.086485] SLOW spr round 6 (radius: 5)
[06:29:15 -42780.086479] SLOW spr round 7 (radius: 10)
[06:30:29 -42780.086474] SLOW spr round 8 (radius: 15)
[06:32:21 -42774.161771] SLOW spr round 9 (radius: 5)
[06:33:47 -42767.711133] SLOW spr round 10 (radius: 5)
[06:35:04 -42767.266094] SLOW spr round 11 (radius: 5)
[06:36:15 -42767.265648] SLOW spr round 12 (radius: 10)
[06:37:24 -42767.265637] SLOW spr round 13 (radius: 15)
[06:39:15 -42763.228209] SLOW spr round 14 (radius: 5)
[06:40:37 -42759.748552] SLOW spr round 15 (radius: 5)
[06:41:51 -42759.345177] SLOW spr round 16 (radius: 5)
[06:43:02 -42757.092152] SLOW spr round 17 (radius: 5)
[06:44:09 -42757.090827] SLOW spr round 18 (radius: 10)
[06:45:17 -42757.090494] SLOW spr round 19 (radius: 15)
[06:47:08 -42756.304951] SLOW spr round 20 (radius: 5)
[06:48:28 -42753.254968] SLOW spr round 21 (radius: 5)
[06:49:40 -42753.252943] SLOW spr round 22 (radius: 10)
[06:50:50 -42753.252632] SLOW spr round 23 (radius: 15)
[06:52:40 -42752.364895] SLOW spr round 24 (radius: 5)
[06:54:03 -42752.163528] SLOW spr round 25 (radius: 5)
[06:55:19 -42752.163186] SLOW spr round 26 (radius: 10)
[06:56:32 -42752.163142] SLOW spr round 27 (radius: 15)
[06:58:23 -42751.578246] SLOW spr round 28 (radius: 5)
[06:59:46 -42751.577746] SLOW spr round 29 (radius: 10)
[07:01:04 -42751.577737] SLOW spr round 30 (radius: 15)
[07:02:47 -42750.472901] SLOW spr round 31 (radius: 5)
[07:04:11 -42747.114989] SLOW spr round 32 (radius: 5)
[07:05:27 -42745.926738] SLOW spr round 33 (radius: 5)
[07:06:39 -42745.731634] SLOW spr round 34 (radius: 5)
[07:07:48 -42745.731348] SLOW spr round 35 (radius: 10)
[07:08:55 -42744.635239] SLOW spr round 36 (radius: 5)
[07:10:12 -42744.634797] SLOW spr round 37 (radius: 10)
[07:11:28 -42743.511054] SLOW spr round 38 (radius: 5)
[07:12:44 -42743.510981] SLOW spr round 39 (radius: 10)
[07:13:57 -42742.334336] SLOW spr round 40 (radius: 5)
[07:15:15 -42739.130006] SLOW spr round 41 (radius: 5)
[07:16:27 -42738.825256] SLOW spr round 42 (radius: 5)
[07:17:35 -42738.824055] SLOW spr round 43 (radius: 10)
[07:18:41 -42738.824017] SLOW spr round 44 (radius: 15)
[07:20:32 -42738.713793] SLOW spr round 45 (radius: 5)
[07:21:52 -42738.713770] SLOW spr round 46 (radius: 10)
[07:23:11 -42738.713770] SLOW spr round 47 (radius: 15)
[07:24:58 -42738.713770] SLOW spr round 48 (radius: 20)
[07:26:59 -42734.880766] SLOW spr round 49 (radius: 5)
[07:28:19 -42733.699767] SLOW spr round 50 (radius: 5)
[07:29:33 -42733.699483] SLOW spr round 51 (radius: 10)
[07:30:44 -42733.699459] SLOW spr round 52 (radius: 15)
[07:32:31 -42732.650945] SLOW spr round 53 (radius: 5)
[07:33:51 -42732.606053] SLOW spr round 54 (radius: 10)
[07:35:12 -42732.606046] SLOW spr round 55 (radius: 15)
[07:36:58 -42732.606046] SLOW spr round 56 (radius: 20)
[07:39:00 -42732.321434] SLOW spr round 57 (radius: 5)
[07:40:21 -42731.706052] SLOW spr round 58 (radius: 5)
[07:41:37 -42731.706039] SLOW spr round 59 (radius: 10)
[07:42:50 -42731.706039] SLOW spr round 60 (radius: 15)
[07:44:38 -42731.075588] SLOW spr round 61 (radius: 5)
[07:45:59 -42730.523949] SLOW spr round 62 (radius: 5)
[07:47:12 -42730.523433] SLOW spr round 63 (radius: 10)
[07:48:22 -42730.523351] SLOW spr round 64 (radius: 15)
[07:50:09 -42730.035702] SLOW spr round 65 (radius: 5)
[07:51:31 -42728.276958] SLOW spr round 66 (radius: 5)
[07:52:46 -42728.276916] SLOW spr round 67 (radius: 10)
[07:54:02 -42724.153772] SLOW spr round 68 (radius: 5)
[07:55:24 -42722.618744] SLOW spr round 69 (radius: 5)
[07:56:38 -42722.617169] SLOW spr round 70 (radius: 10)
[07:57:52 -42722.617129] SLOW spr round 71 (radius: 15)
[07:59:45 -42721.735901] SLOW spr round 72 (radius: 5)
[08:01:08 -42721.735785] SLOW spr round 73 (radius: 10)
[08:02:29 -42721.735785] SLOW spr round 74 (radius: 15)
[08:04:14 -42721.735785] SLOW spr round 75 (radius: 20)
[08:06:16 -42721.543306] SLOW spr round 76 (radius: 5)
[08:07:36 -42721.543291] SLOW spr round 77 (radius: 10)
[08:08:55 -42720.722616] SLOW spr round 78 (radius: 5)
[08:10:11 -42719.880811] SLOW spr round 79 (radius: 5)
[08:11:22 -42719.879865] SLOW spr round 80 (radius: 10)
[08:12:34 -42719.879762] SLOW spr round 81 (radius: 15)
[08:14:29 -42719.879752] SLOW spr round 82 (radius: 20)
[08:16:31 -42719.828025] SLOW spr round 83 (radius: 25)
[08:18:36 -42719.160084] SLOW spr round 84 (radius: 5)
[08:19:59 -42718.494190] SLOW spr round 85 (radius: 5)
[08:21:13 -42718.494186] SLOW spr round 86 (radius: 10)
[08:22:26 -42715.146527] SLOW spr round 87 (radius: 5)
[08:23:43 -42714.728557] SLOW spr round 88 (radius: 5)
[08:24:53 -42714.728531] SLOW spr round 89 (radius: 10)
[08:26:03 -42714.728531] SLOW spr round 90 (radius: 15)
[08:27:59 -42714.728531] SLOW spr round 91 (radius: 20)
[08:30:09 -42714.728531] SLOW spr round 92 (radius: 25)
[08:32:20 -42694.167876] SLOW spr round 93 (radius: 5)
[08:33:48 -42602.171527] SLOW spr round 94 (radius: 5)
[08:35:06 -42597.976488] SLOW spr round 95 (radius: 5)
[08:36:19 -42597.976436] SLOW spr round 96 (radius: 10)
[08:37:31 -42597.976436] SLOW spr round 97 (radius: 15)
[08:39:28 -42597.976436] SLOW spr round 98 (radius: 20)
[08:41:36 -42597.976436] SLOW spr round 99 (radius: 25)
[08:43:40 -42597.231201] SLOW spr round 100 (radius: 5)
[08:45:02 -42594.406731] SLOW spr round 101 (radius: 5)
[08:46:19 -42594.406721] SLOW spr round 102 (radius: 10)
[08:47:36 -42594.406721] SLOW spr round 103 (radius: 15)
[08:49:30 -42594.406721] SLOW spr round 104 (radius: 20)
[08:51:39 -42594.406721] SLOW spr round 105 (radius: 25)
[08:53:46 -42594.406721] Model parameter optimization (eps = 0.100000)

[08:53:51] ML tree search #5, logLikelihood: -42594.200880

[08:53:51 -98173.944685] Initial branch length optimization
[08:53:52 -82419.939841] Model parameter optimization (eps = 10.000000)
[08:54:05 -82244.591950] AUTODETECT spr round 1 (radius: 5)
[08:55:10 -67690.939234] AUTODETECT spr round 2 (radius: 10)
[08:56:27 -55043.412540] AUTODETECT spr round 3 (radius: 15)
[08:57:48 -49023.088364] AUTODETECT spr round 4 (radius: 20)
[08:59:25 -47768.538235] AUTODETECT spr round 5 (radius: 25)
[09:01:05 -46852.040923] SPR radius for FAST iterations: 25 (autodetect)
[09:01:05 -46852.040923] Model parameter optimization (eps = 3.000000)
[09:01:15 -46711.519600] FAST spr round 1 (radius: 25)
[09:03:03 -43304.065017] FAST spr round 2 (radius: 25)
[09:04:30 -42651.883338] FAST spr round 3 (radius: 25)
[09:05:43 -42508.956171] FAST spr round 4 (radius: 25)
[09:06:47 -42454.199011] FAST spr round 5 (radius: 25)
[09:07:47 -42408.659079] FAST spr round 6 (radius: 25)
[09:08:45 -42408.002717] FAST spr round 7 (radius: 25)
[09:09:42 -42408.002123] Model parameter optimization (eps = 1.000000)
[09:09:48 -42405.293472] SLOW spr round 1 (radius: 5)
[09:11:04 -42396.545241] SLOW spr round 2 (radius: 5)
[09:12:18 -42392.784388] SLOW spr round 3 (radius: 5)
[09:13:31 -42391.424864] SLOW spr round 4 (radius: 5)
[09:14:44 -42390.020897] SLOW spr round 5 (radius: 5)
[09:15:55 -42390.020859] SLOW spr round 6 (radius: 10)
[09:17:07 -42389.131213] SLOW spr round 7 (radius: 5)
[09:18:31 -42389.131196] SLOW spr round 8 (radius: 10)
[09:19:54 -42388.229953] SLOW spr round 9 (radius: 5)
[09:21:17 -42388.229946] SLOW spr round 10 (radius: 10)
[09:22:37 -42388.229938] SLOW spr round 11 (radius: 15)
[09:24:26 -42383.829646] SLOW spr round 12 (radius: 5)
[09:25:49 -42381.077884] SLOW spr round 13 (radius: 5)
[09:27:06 -42379.617641] SLOW spr round 14 (radius: 5)
[09:28:19 -42379.617457] SLOW spr round 15 (radius: 10)
[09:29:33 -42378.119560] SLOW spr round 16 (radius: 5)
[09:30:57 -42377.815738] SLOW spr round 17 (radius: 5)
[09:32:15 -42377.143040] SLOW spr round 18 (radius: 5)
[09:33:27 -42375.717142] SLOW spr round 19 (radius: 5)
[09:34:40 -42374.434674] SLOW spr round 20 (radius: 5)
[09:35:50 -42373.274553] SLOW spr round 21 (radius: 5)
[09:37:01 -42372.419832] SLOW spr round 22 (radius: 5)
[09:38:11 -42371.787256] SLOW spr round 23 (radius: 5)
[09:39:20 -42371.785904] SLOW spr round 24 (radius: 10)
[09:40:31 -42371.785815] SLOW spr round 25 (radius: 15)
[09:42:30 -42371.785804] SLOW spr round 26 (radius: 20)
[09:44:41 -42368.163168] SLOW spr round 27 (radius: 5)
[09:46:08 -42364.035795] SLOW spr round 28 (radius: 5)
[09:47:26 -42363.404489] SLOW spr round 29 (radius: 5)
[09:48:38 -42363.404290] SLOW spr round 30 (radius: 10)
[09:49:50 -42363.404257] SLOW spr round 31 (radius: 15)
[09:51:45 -42363.404246] SLOW spr round 32 (radius: 20)
[09:53:52 -42363.048287] SLOW spr round 33 (radius: 5)
[09:55:17 -42361.957681] SLOW spr round 34 (radius: 5)
[09:56:34 -42361.957674] SLOW spr round 35 (radius: 10)
[09:57:48 -42361.957667] SLOW spr round 36 (radius: 15)
[09:59:39 -42361.957660] SLOW spr round 37 (radius: 20)
[10:01:48 -42361.957653] SLOW spr round 38 (radius: 25)
[10:04:11 -42358.513169] SLOW spr round 39 (radius: 5)
[10:05:35 -42357.925457] SLOW spr round 40 (radius: 5)
[10:06:52 -42357.925424] SLOW spr round 41 (radius: 10)
[10:08:07 -42357.925417] SLOW spr round 42 (radius: 15)
[10:09:59 -42356.723529] SLOW spr round 43 (radius: 5)
[10:11:23 -42356.333115] SLOW spr round 44 (radius: 5)
[10:12:38 -42356.332774] SLOW spr round 45 (radius: 10)
[10:13:53 -42356.298290] SLOW spr round 46 (radius: 15)
[10:15:45 -42354.246596] SLOW spr round 47 (radius: 5)
[10:17:05 -42354.246447] SLOW spr round 48 (radius: 10)
[10:18:27 -42352.999264] SLOW spr round 49 (radius: 5)
[10:19:47 -42352.999228] SLOW spr round 50 (radius: 10)
[10:21:05 -42352.999223] SLOW spr round 51 (radius: 15)
[10:22:56 -42351.815076] SLOW spr round 52 (radius: 5)
[10:24:19 -42351.783007] SLOW spr round 53 (radius: 10)
[10:25:37 -42351.782449] SLOW spr round 54 (radius: 15)
[10:27:19 -42351.782441] SLOW spr round 55 (radius: 20)
[10:29:31 -42351.782441] SLOW spr round 56 (radius: 25)
[10:31:57 -42350.401458] SLOW spr round 57 (radius: 5)
[10:33:15 -42350.401330] SLOW spr round 58 (radius: 10)
[10:34:36 -42350.401329] SLOW spr round 59 (radius: 15)
[10:36:16 -42350.401329] SLOW spr round 60 (radius: 20)
[10:38:27 -42350.401329] SLOW spr round 61 (radius: 25)
[10:40:44 -42350.401329] Model parameter optimization (eps = 0.100000)

[10:40:49] ML tree search #6, logLikelihood: -42349.693862

[10:40:49 -98604.007449] Initial branch length optimization
[10:40:50 -82705.576960] Model parameter optimization (eps = 10.000000)
[10:41:04 -82544.227294] AUTODETECT spr round 1 (radius: 5)
[10:42:04 -68197.088040] AUTODETECT spr round 2 (radius: 10)
[10:43:15 -57467.080690] AUTODETECT spr round 3 (radius: 15)
[10:44:32 -51943.981104] AUTODETECT spr round 4 (radius: 20)
[10:45:51 -49712.172491] AUTODETECT spr round 5 (radius: 25)
[10:47:21 -48702.319148] SPR radius for FAST iterations: 25 (autodetect)
[10:47:21 -48702.319148] Model parameter optimization (eps = 3.000000)
[10:47:24 -48701.922090] FAST spr round 1 (radius: 25)
[10:49:11 -43409.841902] FAST spr round 2 (radius: 25)
[10:50:35 -42821.680198] FAST spr round 3 (radius: 25)
[10:51:46 -42700.273368] FAST spr round 4 (radius: 25)
[10:52:49 -42675.789802] FAST spr round 5 (radius: 25)
[10:53:49 -42657.115783] FAST spr round 6 (radius: 25)
[10:54:45 -42655.077036] FAST spr round 7 (radius: 25)
[10:55:40 -42654.889444] FAST spr round 8 (radius: 25)
[10:56:34 -42654.889042] Model parameter optimization (eps = 1.000000)
[10:56:41 -42551.794056] SLOW spr round 1 (radius: 5)
[10:57:51 -42532.986094] SLOW spr round 2 (radius: 5)
[10:59:03 -42529.302252] SLOW spr round 3 (radius: 5)
[11:00:16 -42528.946129] SLOW spr round 4 (radius: 5)
[11:01:28 -42528.667679] SLOW spr round 5 (radius: 5)
[11:02:39 -42528.667614] SLOW spr round 6 (radius: 10)
[11:03:54 -42517.338472] SLOW spr round 7 (radius: 5)
[11:05:21 -42510.347396] SLOW spr round 8 (radius: 5)
[11:06:40 -42510.148939] SLOW spr round 9 (radius: 5)
[11:07:54 -42510.147861] SLOW spr round 10 (radius: 10)
[11:09:09 -42506.577027] SLOW spr round 11 (radius: 5)
[11:10:35 -42504.940236] SLOW spr round 12 (radius: 5)
[11:11:56 -42503.537748] SLOW spr round 13 (radius: 5)
[11:13:11 -42503.536034] SLOW spr round 14 (radius: 10)
[11:14:27 -42499.847321] SLOW spr round 15 (radius: 5)
[11:15:55 -42497.157204] SLOW spr round 16 (radius: 5)
[11:17:13 -42496.860090] SLOW spr round 17 (radius: 5)
[11:18:29 -42496.860032] SLOW spr round 18 (radius: 10)
[11:19:45 -42494.030096] SLOW spr round 19 (radius: 5)
[11:21:10 -42493.956027] SLOW spr round 20 (radius: 10)
[11:22:33 -42492.507180] SLOW spr round 21 (radius: 5)
[11:23:59 -42491.434578] SLOW spr round 22 (radius: 5)
[11:25:16 -42491.376901] SLOW spr round 23 (radius: 10)
[11:26:32 -42489.836484] SLOW spr round 24 (radius: 5)
[11:27:54 -42489.836088] SLOW spr round 25 (radius: 10)
[11:29:16 -42489.836082] SLOW spr round 26 (radius: 15)
[11:31:18 -42477.178934] SLOW spr round 27 (radius: 5)
[11:32:47 -42475.363881] SLOW spr round 28 (radius: 5)
[11:34:08 -42475.328726] SLOW spr round 29 (radius: 10)
[11:35:26 -42471.890785] SLOW spr round 30 (radius: 5)
[11:36:50 -42471.889142] SLOW spr round 31 (radius: 10)
[11:38:13 -42471.153859] SLOW spr round 32 (radius: 5)
[11:39:37 -42469.437986] SLOW spr round 33 (radius: 5)
[11:40:56 -42467.093735] SLOW spr round 34 (radius: 5)
[11:42:10 -42467.092726] SLOW spr round 35 (radius: 10)
[11:43:24 -42465.459582] SLOW spr round 36 (radius: 5)
[11:44:52 -42463.298585] SLOW spr round 37 (radius: 5)
[11:46:10 -42463.298451] SLOW spr round 38 (radius: 10)
[11:47:27 -42463.298449] SLOW spr round 39 (radius: 15)
[11:49:32 -42454.014948] SLOW spr round 40 (radius: 5)
[11:51:01 -42384.943926] SLOW spr round 41 (radius: 5)
[11:52:22 -42383.642907] SLOW spr round 42 (radius: 5)
[11:53:37 -42382.261497] SLOW spr round 43 (radius: 5)
[11:54:49 -42382.260091] SLOW spr round 44 (radius: 10)
[11:56:03 -42380.485729] SLOW spr round 45 (radius: 5)
[11:57:28 -42379.795549] SLOW spr round 46 (radius: 5)
[11:58:45 -42379.795546] SLOW spr round 47 (radius: 10)
[12:00:01 -42379.795546] SLOW spr round 48 (radius: 15)
[12:02:03 -42379.384383] SLOW spr round 49 (radius: 5)
[12:03:30 -42378.222454] SLOW spr round 50 (radius: 5)
[12:04:50 -42376.768278] SLOW spr round 51 (radius: 5)
[12:06:04 -42376.746970] SLOW spr round 52 (radius: 10)
[12:07:19 -42376.745767] SLOW spr round 53 (radius: 15)
[12:09:27 -42376.672493] SLOW spr round 54 (radius: 20)
[12:11:55 -42371.054516] SLOW spr round 55 (radius: 5)
[12:13:24 -42369.611657] SLOW spr round 56 (radius: 5)
[12:14:46 -42368.770908] SLOW spr round 57 (radius: 5)
[12:16:02 -42368.770671] SLOW spr round 58 (radius: 10)
[12:17:16 -42367.789216] SLOW spr round 59 (radius: 5)
[12:18:42 -42364.467566] SLOW spr round 60 (radius: 5)
[12:20:00 -42364.467556] SLOW spr round 61 (radius: 10)
[12:21:17 -42364.467556] SLOW spr round 62 (radius: 15)
[12:23:23 -42364.132308] SLOW spr round 63 (radius: 5)
[12:24:53 -42364.071778] SLOW spr round 64 (radius: 10)
[12:26:19 -42364.070876] SLOW spr round 65 (radius: 15)
[12:28:21 -42364.070811] SLOW spr round 66 (radius: 20)
[12:30:54 -42364.070806] SLOW spr round 67 (radius: 25)
[12:33:47 -42363.146324] SLOW spr round 68 (radius: 5)
[12:35:18 -42363.146138] SLOW spr round 69 (radius: 10)
[12:36:49 -42363.146136] SLOW spr round 70 (radius: 15)
[12:38:49 -42363.146135] SLOW spr round 71 (radius: 20)
[12:41:21 -42363.146135] SLOW spr round 72 (radius: 25)
[12:44:10 -42363.146135] Model parameter optimization (eps = 0.100000)

[12:44:15] ML tree search #7, logLikelihood: -42362.290906

[12:44:16 -98108.260328] Initial branch length optimization
[12:44:17 -82426.390098] Model parameter optimization (eps = 10.000000)
[12:44:32 -82266.141798] AUTODETECT spr round 1 (radius: 5)
[12:45:39 -67342.039833] AUTODETECT spr round 2 (radius: 10)
[12:46:54 -56029.911913] AUTODETECT spr round 3 (radius: 15)
[12:48:19 -51113.014259] AUTODETECT spr round 4 (radius: 20)
[12:49:55 -48185.278113] AUTODETECT spr round 5 (radius: 25)
[12:51:37 -47230.213349] SPR radius for FAST iterations: 25 (autodetect)
[12:51:37 -47230.213349] Model parameter optimization (eps = 3.000000)
[12:51:48 -47090.199251] FAST spr round 1 (radius: 25)
[12:53:41 -42939.371584] FAST spr round 2 (radius: 25)
[12:55:02 -42629.272946] FAST spr round 3 (radius: 25)
[12:56:10 -42567.473681] FAST spr round 4 (radius: 25)
[12:57:11 -42542.131351] FAST spr round 5 (radius: 25)
[12:58:09 -42467.520943] FAST spr round 6 (radius: 25)
[12:59:03 -42466.913168] FAST spr round 7 (radius: 25)
[12:59:56 -42462.871830] FAST spr round 8 (radius: 25)
[13:00:49 -42461.765675] FAST spr round 9 (radius: 25)
[13:01:42 -42461.765271] Model parameter optimization (eps = 1.000000)
[13:01:49 -42457.832957] SLOW spr round 1 (radius: 5)
[13:02:57 -42449.181485] SLOW spr round 2 (radius: 5)
[13:04:03 -42448.875742] SLOW spr round 3 (radius: 5)
[13:05:07 -42448.875640] SLOW spr round 4 (radius: 10)
[13:06:14 -42442.989892] SLOW spr round 5 (radius: 5)
[13:07:30 -42442.989853] SLOW spr round 6 (radius: 10)
[13:08:44 -42442.989848] SLOW spr round 7 (radius: 15)
[13:10:28 -42436.608496] SLOW spr round 8 (radius: 5)
[13:11:47 -42436.607760] SLOW spr round 9 (radius: 10)
[13:13:09 -42434.227042] SLOW spr round 10 (radius: 5)
[13:14:24 -42433.383709] SLOW spr round 11 (radius: 5)
[13:15:35 -42429.677808] SLOW spr round 12 (radius: 5)
[13:16:41 -42429.649458] SLOW spr round 13 (radius: 10)
[13:17:48 -42429.649424] SLOW spr round 14 (radius: 15)
[13:19:37 -42427.936851] SLOW spr round 15 (radius: 5)
[13:20:56 -42427.923052] SLOW spr round 16 (radius: 10)
[13:22:14 -42427.922898] SLOW spr round 17 (radius: 15)
[13:23:59 -42427.922882] SLOW spr round 18 (radius: 20)
[13:26:05 -42424.132479] SLOW spr round 19 (radius: 5)
[13:27:26 -42420.961575] SLOW spr round 20 (radius: 5)
[13:28:38 -42420.085448] SLOW spr round 21 (radius: 5)
[13:29:45 -42420.085365] SLOW spr round 22 (radius: 10)
[13:30:52 -42420.085361] SLOW spr round 23 (radius: 15)
[13:32:39 -42419.609892] SLOW spr round 24 (radius: 5)
[13:33:57 -42419.609243] SLOW spr round 25 (radius: 10)
[13:35:12 -42419.609151] SLOW spr round 26 (radius: 15)
[13:36:53 -42419.609138] SLOW spr round 27 (radius: 20)
[13:38:53 -42418.647181] SLOW spr round 28 (radius: 5)
[13:40:10 -42416.787257] SLOW spr round 29 (radius: 5)
[13:41:20 -42416.787154] SLOW spr round 30 (radius: 10)
[13:42:29 -42416.787151] SLOW spr round 31 (radius: 15)
[13:44:12 -42416.787149] SLOW spr round 32 (radius: 20)
[13:46:13 -42415.622264] SLOW spr round 33 (radius: 5)
[13:47:29 -42415.622139] SLOW spr round 34 (radius: 10)
[13:48:48 -42415.622136] SLOW spr round 35 (radius: 15)
[13:50:29 -42415.622133] SLOW spr round 36 (radius: 20)
[13:52:33 -42415.598068] SLOW spr round 37 (radius: 25)
[13:54:50 -42413.764911] SLOW spr round 38 (radius: 5)
[13:56:05 -42413.609602] SLOW spr round 39 (radius: 5)
[13:57:16 -42413.607636] SLOW spr round 40 (radius: 10)
[13:58:26 -42413.607192] SLOW spr round 41 (radius: 15)
[14:00:12 -42413.607057] SLOW spr round 42 (radius: 20)
[14:02:17 -42412.351284] SLOW spr round 43 (radius: 5)
[14:03:40 -42412.349165] SLOW spr round 44 (radius: 10)
[14:04:56 -42412.349155] SLOW spr round 45 (radius: 15)
[14:06:36 -42412.349154] SLOW spr round 46 (radius: 20)
[14:08:36 -42412.349154] SLOW spr round 47 (radius: 25)
[14:10:49 -42412.349154] Model parameter optimization (eps = 0.100000)

[14:10:54] ML tree search #8, logLikelihood: -42412.051699

[14:10:54 -98767.823604] Initial branch length optimization
[14:10:55 -82732.363894] Model parameter optimization (eps = 10.000000)
[14:11:07 -82573.354908] AUTODETECT spr round 1 (radius: 5)
[14:12:08 -68446.756863] AUTODETECT spr round 2 (radius: 10)
[14:13:19 -56833.141428] AUTODETECT spr round 3 (radius: 15)
[14:14:39 -49926.589517] AUTODETECT spr round 4 (radius: 20)
[14:16:01 -47965.027986] AUTODETECT spr round 5 (radius: 25)
[14:17:35 -47277.700979] SPR radius for FAST iterations: 25 (autodetect)
[14:17:35 -47277.700979] Model parameter optimization (eps = 3.000000)
[14:17:47 -47171.496496] FAST spr round 1 (radius: 25)
[14:19:31 -43687.251233] FAST spr round 2 (radius: 25)
[14:20:49 -43365.014263] FAST spr round 3 (radius: 25)
[14:21:54 -43325.400383] FAST spr round 4 (radius: 25)
[14:22:56 -43315.308085] FAST spr round 5 (radius: 25)
[14:23:53 -43314.798439] FAST spr round 6 (radius: 25)
[14:24:49 -43314.797629] Model parameter optimization (eps = 1.000000)
[14:24:55 -43313.117485] SLOW spr round 1 (radius: 5)
[14:26:04 -43305.191845] SLOW spr round 2 (radius: 5)
[14:27:11 -43302.216051] SLOW spr round 3 (radius: 5)
[14:28:16 -43302.214920] SLOW spr round 4 (radius: 10)
[14:29:25 -43299.935461] SLOW spr round 5 (radius: 5)
[14:30:42 -43298.685130] SLOW spr round 6 (radius: 5)
[14:31:53 -43298.684230] SLOW spr round 7 (radius: 10)
[14:33:04 -43298.684073] SLOW spr round 8 (radius: 15)
[14:34:47 -43295.167381] SLOW spr round 9 (radius: 5)
[14:36:10 -43294.095713] SLOW spr round 10 (radius: 5)
[14:37:21 -43294.094822] SLOW spr round 11 (radius: 10)
[14:38:31 -43293.361348] SLOW spr round 12 (radius: 5)
[14:39:49 -43290.385508] SLOW spr round 13 (radius: 5)
[14:41:00 -43289.449496] SLOW spr round 14 (radius: 5)
[14:42:08 -43289.447512] SLOW spr round 15 (radius: 10)
[14:43:15 -43289.446789] SLOW spr round 16 (radius: 15)
[14:44:58 -43289.368469] SLOW spr round 17 (radius: 20)
[14:46:50 -43285.412394] SLOW spr round 18 (radius: 5)
[14:48:14 -43283.711564] SLOW spr round 19 (radius: 5)
[14:49:30 -43282.241981] SLOW spr round 20 (radius: 5)
[14:50:41 -43282.241741] SLOW spr round 21 (radius: 10)
[14:51:52 -43282.241604] SLOW spr round 22 (radius: 15)
[14:53:35 -43279.155312] SLOW spr round 23 (radius: 5)
[14:54:56 -43274.600475] SLOW spr round 24 (radius: 5)
[14:56:09 -43273.243370] SLOW spr round 25 (radius: 5)
[14:57:16 -43273.242758] SLOW spr round 26 (radius: 10)
[14:58:24 -43273.242646] SLOW spr round 27 (radius: 15)
[15:00:08 -43270.744478] SLOW spr round 28 (radius: 5)
[15:01:26 -43270.744311] SLOW spr round 29 (radius: 10)
[15:02:45 -43270.744246] SLOW spr round 30 (radius: 15)
[15:04:25 -43269.809849] SLOW spr round 31 (radius: 5)
[15:05:46 -43269.809779] SLOW spr round 32 (radius: 10)
[15:07:07 -43269.809720] SLOW spr round 33 (radius: 15)
[15:08:49 -43269.809662] SLOW spr round 34 (radius: 20)
[15:10:44 -43269.622748] SLOW spr round 35 (radius: 5)
[15:12:05 -43266.840751] SLOW spr round 36 (radius: 5)
[15:13:20 -43266.302343] SLOW spr round 37 (radius: 5)
[15:14:29 -43266.302235] SLOW spr round 38 (radius: 10)
[15:15:40 -43266.302185] SLOW spr round 39 (radius: 15)
[15:17:27 -43265.287277] SLOW spr round 40 (radius: 5)
[15:18:45 -43264.506832] SLOW spr round 41 (radius: 5)
[15:19:58 -43264.506536] SLOW spr round 42 (radius: 10)
[15:21:09 -43264.506490] SLOW spr round 43 (radius: 15)
[15:22:53 -43264.506445] SLOW spr round 44 (radius: 20)
[15:24:46 -43264.475841] SLOW spr round 45 (radius: 25)
[15:26:45 -43264.049800] SLOW spr round 46 (radius: 5)
[15:28:04 -43263.932358] SLOW spr round 47 (radius: 5)
[15:29:16 -43263.931819] SLOW spr round 48 (radius: 10)
[15:30:27 -43263.931670] SLOW spr round 49 (radius: 15)
[15:32:14 -43263.931606] SLOW spr round 50 (radius: 20)
[15:34:12 -43263.931561] SLOW spr round 51 (radius: 25)
[15:36:14 -43262.453290] SLOW spr round 52 (radius: 5)
[15:37:43 -43261.950970] SLOW spr round 53 (radius: 5)
[15:39:02 -43261.948113] SLOW spr round 54 (radius: 10)
[15:40:19 -43261.946992] SLOW spr round 55 (radius: 15)
[15:42:03 -43261.946533] SLOW spr round 56 (radius: 20)
[15:44:01 -43261.946329] SLOW spr round 57 (radius: 25)
[15:46:00 -43261.657880] SLOW spr round 58 (radius: 5)
[15:47:27 -43261.657628] SLOW spr round 59 (radius: 10)
[15:48:55 -43261.657586] SLOW spr round 60 (radius: 15)
[15:50:39 -43261.657547] SLOW spr round 61 (radius: 20)
[15:52:39 -43261.657509] SLOW spr round 62 (radius: 25)
[15:54:41 -43260.767359] SLOW spr round 63 (radius: 5)
[15:56:08 -43260.767093] SLOW spr round 64 (radius: 10)
[15:57:37 -43258.460428] SLOW spr round 65 (radius: 5)
[15:59:02 -43258.460086] SLOW spr round 66 (radius: 10)
[16:00:28 -43258.460043] SLOW spr round 67 (radius: 15)
[16:02:16 -43258.460006] SLOW spr round 68 (radius: 20)
[16:04:15 -43258.459971] SLOW spr round 69 (radius: 25)
[16:06:21 -43258.459935] Model parameter optimization (eps = 0.100000)

[16:06:25] ML tree search #9, logLikelihood: -43258.410730

[16:06:25 -98236.627782] Initial branch length optimization
[16:06:26 -82327.748094] Model parameter optimization (eps = 10.000000)
[16:06:39 -82172.507474] AUTODETECT spr round 1 (radius: 5)
[16:07:44 -68089.957993] AUTODETECT spr round 2 (radius: 10)
[16:09:03 -55854.466726] AUTODETECT spr round 3 (radius: 15)
[16:10:35 -49613.326860] AUTODETECT spr round 4 (radius: 20)
[16:12:14 -47753.073068] AUTODETECT spr round 5 (radius: 25)
[16:13:51 -46851.830087] SPR radius for FAST iterations: 25 (autodetect)
[16:13:51 -46851.830087] Model parameter optimization (eps = 3.000000)
[16:14:03 -46727.988937] FAST spr round 1 (radius: 25)
[16:15:56 -42997.800155] FAST spr round 2 (radius: 25)
[16:17:24 -42736.872263] FAST spr round 3 (radius: 25)
[16:18:38 -42695.135365] FAST spr round 4 (radius: 25)
[16:19:46 -42682.329728] FAST spr round 5 (radius: 25)
[16:20:50 -42681.890030] FAST spr round 6 (radius: 25)
[16:21:52 -42680.089195] FAST spr round 7 (radius: 25)
[16:22:54 -42678.289148] FAST spr round 8 (radius: 25)
[16:23:56 -42676.600059] FAST spr round 9 (radius: 25)
[16:24:57 -42676.600053] Model parameter optimization (eps = 1.000000)
[16:25:05 -42672.241261] SLOW spr round 1 (radius: 5)
[16:26:18 -42661.306458] SLOW spr round 2 (radius: 5)
[16:27:32 -42653.985735] SLOW spr round 3 (radius: 5)
[16:28:45 -42652.770043] SLOW spr round 4 (radius: 5)
[16:29:58 -42652.769908] SLOW spr round 5 (radius: 10)
[16:31:14 -42643.153279] SLOW spr round 6 (radius: 5)
[16:32:39 -42643.109600] SLOW spr round 7 (radius: 10)
[16:34:03 -42642.804964] SLOW spr round 8 (radius: 5)
[16:35:30 -42642.804559] SLOW spr round 9 (radius: 10)
[16:36:51 -42641.878792] SLOW spr round 10 (radius: 5)
[16:38:14 -42641.242871] SLOW spr round 11 (radius: 5)
[16:39:31 -42641.237013] SLOW spr round 12 (radius: 10)
[16:40:46 -42639.913234] SLOW spr round 13 (radius: 5)
[16:42:12 -42639.246792] SLOW spr round 14 (radius: 5)
[16:43:28 -42639.246198] SLOW spr round 15 (radius: 10)
[16:44:42 -42639.246178] SLOW spr round 16 (radius: 15)
[16:46:43 -42625.733684] SLOW spr round 17 (radius: 5)
[16:48:12 -42622.668654] SLOW spr round 18 (radius: 5)
[16:49:29 -42622.668514] SLOW spr round 19 (radius: 10)
[16:50:46 -42622.668507] SLOW spr round 20 (radius: 15)
[16:52:42 -42620.926937] SLOW spr round 21 (radius: 5)
[16:54:05 -42620.639995] SLOW spr round 22 (radius: 5)
[16:55:23 -42620.615571] SLOW spr round 23 (radius: 10)
[16:56:38 -42620.615081] SLOW spr round 24 (radius: 15)
[16:58:34 -42620.230532] SLOW spr round 25 (radius: 5)
[17:00:04 -42620.230375] SLOW spr round 26 (radius: 10)
[17:01:28 -42620.230374] SLOW spr round 27 (radius: 15)
[17:03:21 -42619.996873] SLOW spr round 28 (radius: 5)
[17:04:47 -42619.996744] SLOW spr round 29 (radius: 10)
[17:06:11 -42619.996741] SLOW spr round 30 (radius: 15)
[17:08:03 -42619.996741] SLOW spr round 31 (radius: 20)
[17:10:26 -42619.752164] SLOW spr round 32 (radius: 5)
[17:11:56 -42619.752164] SLOW spr round 33 (radius: 10)
[17:13:20 -42619.752164] SLOW spr round 34 (radius: 15)
[17:15:12 -42619.752164] SLOW spr round 35 (radius: 20)
[17:17:33 -42619.630897] SLOW spr round 36 (radius: 5)
[17:18:55 -42619.610239] SLOW spr round 37 (radius: 10)
[17:20:18 -42619.610231] SLOW spr round 38 (radius: 15)
[17:22:08 -42619.058085] SLOW spr round 39 (radius: 5)
[17:23:33 -42617.990235] SLOW spr round 40 (radius: 5)
[17:24:51 -42617.989955] SLOW spr round 41 (radius: 10)
[17:26:07 -42617.266573] SLOW spr round 42 (radius: 5)
[17:27:25 -42617.266561] SLOW spr round 43 (radius: 10)
[17:28:43 -42617.266561] SLOW spr round 44 (radius: 15)
[17:30:33 -42617.266561] SLOW spr round 45 (radius: 20)
[17:32:49 -42617.220548] SLOW spr round 46 (radius: 25)
[17:35:10 -42617.099701] SLOW spr round 47 (radius: 5)
[17:36:34 -42617.099289] SLOW spr round 48 (radius: 10)
[17:37:58 -42617.099271] SLOW spr round 49 (radius: 15)
[17:39:46 -42616.710532] SLOW spr round 50 (radius: 5)
[17:41:08 -42616.710417] SLOW spr round 51 (radius: 10)
[17:42:29 -42616.710414] SLOW spr round 52 (radius: 15)
[17:44:19 -42616.710414] SLOW spr round 53 (radius: 20)
[17:46:33 -42616.710414] SLOW spr round 54 (radius: 25)
[17:48:53 -42616.649571] Model parameter optimization (eps = 0.100000)

[17:48:57] ML tree search #10, logLikelihood: -42616.554519

[17:48:57 -98601.668104] Initial branch length optimization
[17:48:58 -82658.154800] Model parameter optimization (eps = 10.000000)
[17:49:10 -82521.543101] AUTODETECT spr round 1 (radius: 5)
[17:50:14 -67956.308813] AUTODETECT spr round 2 (radius: 10)
[17:51:31 -55693.706514] AUTODETECT spr round 3 (radius: 15)
[17:52:52 -49897.634854] AUTODETECT spr round 4 (radius: 20)
[17:54:30 -47332.615091] AUTODETECT spr round 5 (radius: 25)
[17:56:30 -46848.881600] SPR radius for FAST iterations: 25 (autodetect)
[17:56:30 -46848.881600] Model parameter optimization (eps = 3.000000)
[17:56:40 -46674.713106] FAST spr round 1 (radius: 25)
[17:58:24 -42898.511699] FAST spr round 2 (radius: 25)
[17:59:42 -42613.329097] FAST spr round 3 (radius: 25)
[18:00:50 -42568.433514] FAST spr round 4 (radius: 25)
[18:01:53 -42554.776132] FAST spr round 5 (radius: 25)
[18:02:51 -42553.472286] FAST spr round 6 (radius: 25)
[18:03:47 -42551.932679] FAST spr round 7 (radius: 25)
[18:04:43 -42551.931486] Model parameter optimization (eps = 1.000000)
[18:04:53 -42547.179706] SLOW spr round 1 (radius: 5)
[18:06:04 -42538.885723] SLOW spr round 2 (radius: 5)
[18:07:13 -42537.442832] SLOW spr round 3 (radius: 5)
[18:08:20 -42537.234485] SLOW spr round 4 (radius: 5)
[18:09:26 -42537.234028] SLOW spr round 5 (radius: 10)
[18:10:36 -42531.216195] SLOW spr round 6 (radius: 5)
[18:12:00 -42529.938564] SLOW spr round 7 (radius: 5)
[18:13:16 -42529.938465] SLOW spr round 8 (radius: 10)
[18:14:32 -42529.112322] SLOW spr round 9 (radius: 5)
[18:15:53 -42529.111038] SLOW spr round 10 (radius: 10)
[18:17:13 -42529.110941] SLOW spr round 11 (radius: 15)
[18:19:08 -42525.509866] SLOW spr round 12 (radius: 5)
[18:20:35 -42523.233236] SLOW spr round 13 (radius: 5)
[18:21:53 -42521.139252] SLOW spr round 14 (radius: 5)
[18:23:06 -42518.682445] SLOW spr round 15 (radius: 5)
[18:24:18 -42518.682375] SLOW spr round 16 (radius: 10)
[18:25:30 -42518.682375] SLOW spr round 17 (radius: 15)
[18:27:34 -42518.475343] SLOW spr round 18 (radius: 5)
[18:28:59 -42518.474623] SLOW spr round 19 (radius: 10)
[18:30:23 -42517.854838] SLOW spr round 20 (radius: 5)
[18:31:47 -42517.832055] SLOW spr round 21 (radius: 10)
[18:33:08 -42517.399644] SLOW spr round 22 (radius: 5)
[18:34:31 -42517.399550] SLOW spr round 23 (radius: 10)
[18:35:50 -42517.399549] SLOW spr round 24 (radius: 15)
[18:37:44 -42517.307523] SLOW spr round 25 (radius: 20)
[18:40:03 -42511.686349] SLOW spr round 26 (radius: 5)
[18:41:28 -42509.517747] SLOW spr round 27 (radius: 5)
[18:42:44 -42509.516730] SLOW spr round 28 (radius: 10)
[18:43:56 -42509.476991] SLOW spr round 29 (radius: 15)
[18:45:48 -42509.364104] SLOW spr round 30 (radius: 5)
[18:47:09 -42509.364068] SLOW spr round 31 (radius: 10)
[18:48:29 -42509.364067] SLOW spr round 32 (radius: 15)
[18:50:16 -42509.364067] SLOW spr round 33 (radius: 20)
[18:52:31 -42509.029395] SLOW spr round 34 (radius: 5)
[18:53:56 -42508.446644] SLOW spr round 35 (radius: 5)
[18:55:13 -42508.446559] SLOW spr round 36 (radius: 10)
[18:56:28 -42508.446559] SLOW spr round 37 (radius: 15)
[18:58:20 -42508.446559] SLOW spr round 38 (radius: 20)
[19:00:32 -42508.219467] SLOW spr round 39 (radius: 5)
[19:01:54 -42508.198846] SLOW spr round 40 (radius: 10)
[19:03:16 -42508.198728] SLOW spr round 41 (radius: 15)
[19:05:04 -42508.198723] SLOW spr round 42 (radius: 20)
[19:07:20 -42508.185008] SLOW spr round 43 (radius: 25)
[19:09:36 -42505.007334] SLOW spr round 44 (radius: 5)
[19:11:04 -42504.465417] SLOW spr round 45 (radius: 5)
[19:12:23 -42504.464914] SLOW spr round 46 (radius: 10)
[19:13:40 -42503.958545] SLOW spr round 47 (radius: 5)
[19:15:03 -42503.945769] SLOW spr round 48 (radius: 10)
[19:16:22 -42503.945702] SLOW spr round 49 (radius: 15)
[19:18:13 -42503.317983] SLOW spr round 50 (radius: 5)
[19:19:39 -42502.606358] SLOW spr round 51 (radius: 5)
[19:20:56 -42502.606299] SLOW spr round 52 (radius: 10)
[19:22:11 -42502.606294] SLOW spr round 53 (radius: 15)
[19:24:03 -42502.125272] SLOW spr round 54 (radius: 5)
[19:25:26 -42502.122814] SLOW spr round 55 (radius: 10)
[19:26:48 -42502.122642] SLOW spr round 56 (radius: 15)
[19:28:36 -42502.122628] SLOW spr round 57 (radius: 20)
[19:30:50 -42502.122627] SLOW spr round 58 (radius: 25)
[19:33:02 -42501.540647] SLOW spr round 59 (radius: 5)
[19:34:28 -42501.518382] SLOW spr round 60 (radius: 10)
[19:35:52 -42501.517842] SLOW spr round 61 (radius: 15)
[19:37:39 -42501.517637] SLOW spr round 62 (radius: 20)
[19:39:51 -42501.517557] SLOW spr round 63 (radius: 25)
[19:41:58 -42501.517526] Model parameter optimization (eps = 0.100000)

[19:42:03] ML tree search #11, logLikelihood: -42501.308754

[19:42:03 -98246.362159] Initial branch length optimization
[19:42:04 -82543.015068] Model parameter optimization (eps = 10.000000)
[19:42:19 -82380.442610] AUTODETECT spr round 1 (radius: 5)
[19:43:24 -68253.752927] AUTODETECT spr round 2 (radius: 10)
[19:44:41 -55893.549029] AUTODETECT spr round 3 (radius: 15)
[19:46:00 -50782.854693] AUTODETECT spr round 4 (radius: 20)
[19:47:27 -49111.524186] AUTODETECT spr round 5 (radius: 25)
[19:49:00 -48423.130511] SPR radius for FAST iterations: 25 (autodetect)
[19:49:01 -48423.130511] Model parameter optimization (eps = 3.000000)
[19:49:11 -48318.839017] FAST spr round 1 (radius: 25)
[19:51:11 -43747.204858] FAST spr round 2 (radius: 25)
[19:52:41 -43429.371305] FAST spr round 3 (radius: 25)
[19:53:58 -42621.571192] FAST spr round 4 (radius: 25)
[19:55:11 -42480.559128] FAST spr round 5 (radius: 25)
[19:56:19 -42404.590956] FAST spr round 6 (radius: 25)
[19:57:21 -42402.314208] FAST spr round 7 (radius: 25)
[19:58:22 -42400.054932] FAST spr round 8 (radius: 25)
[19:59:21 -42400.049863] Model parameter optimization (eps = 1.000000)
[19:59:28 -42396.722903] SLOW spr round 1 (radius: 5)
[20:00:44 -42383.069674] SLOW spr round 2 (radius: 5)
[20:01:59 -42382.812885] SLOW spr round 3 (radius: 5)
[20:03:11 -42382.810149] SLOW spr round 4 (radius: 10)
[20:04:28 -42375.012926] SLOW spr round 5 (radius: 5)
[20:05:55 -42372.428085] SLOW spr round 6 (radius: 5)
[20:07:14 -42372.270368] SLOW spr round 7 (radius: 5)
[20:08:28 -42372.269940] SLOW spr round 8 (radius: 10)
[20:09:43 -42369.014138] SLOW spr round 9 (radius: 5)
[20:11:08 -42367.234150] SLOW spr round 10 (radius: 5)
[20:12:25 -42366.967549] SLOW spr round 11 (radius: 5)
[20:13:36 -42366.967542] SLOW spr round 12 (radius: 10)
[20:14:47 -42366.967540] SLOW spr round 13 (radius: 15)
[20:16:39 -42364.691514] SLOW spr round 14 (radius: 5)
[20:18:03 -42364.268002] SLOW spr round 15 (radius: 5)
[20:19:19 -42363.738810] SLOW spr round 16 (radius: 5)
[20:20:31 -42363.738767] SLOW spr round 17 (radius: 10)
[20:21:42 -42361.426772] SLOW spr round 18 (radius: 5)
[20:23:06 -42360.779611] SLOW spr round 19 (radius: 5)
[20:24:22 -42360.779402] SLOW spr round 20 (radius: 10)
[20:25:37 -42360.779392] SLOW spr round 21 (radius: 15)
[20:27:29 -42360.709281] SLOW spr round 22 (radius: 20)
[20:29:46 -42358.784565] SLOW spr round 23 (radius: 5)
[20:31:13 -42355.994233] SLOW spr round 24 (radius: 5)
[20:32:31 -42355.493161] SLOW spr round 25 (radius: 5)
[20:33:46 -42355.492783] SLOW spr round 26 (radius: 10)
[20:35:01 -42355.492776] SLOW spr round 27 (radius: 15)
[20:36:58 -42354.904875] SLOW spr round 28 (radius: 5)
[20:38:25 -42354.288425] SLOW spr round 29 (radius: 5)
[20:39:43 -42354.288420] SLOW spr round 30 (radius: 10)
[20:40:58 -42354.288420] SLOW spr round 31 (radius: 15)
[20:42:51 -42354.288420] SLOW spr round 32 (radius: 20)
[20:45:08 -42354.030437] SLOW spr round 33 (radius: 5)
[20:46:31 -42354.030414] SLOW spr round 34 (radius: 10)
[20:47:52 -42354.030414] SLOW spr round 35 (radius: 15)
[20:49:36 -42354.030414] SLOW spr round 36 (radius: 20)
[20:51:50 -42353.986131] SLOW spr round 37 (radius: 25)
[20:54:12 -42348.448958] SLOW spr round 38 (radius: 5)
[20:55:36 -42346.240345] SLOW spr round 39 (radius: 5)
[20:56:52 -42346.237431] SLOW spr round 40 (radius: 10)
[20:58:05 -42346.237092] SLOW spr round 41 (radius: 15)
[20:59:54 -42346.237028] SLOW spr round 42 (radius: 20)
[21:02:09 -42346.237005] SLOW spr round 43 (radius: 25)
[21:04:32 -42346.201274] Model parameter optimization (eps = 0.100000)

[21:04:37] ML tree search #12, logLikelihood: -42346.064377

[21:04:37 -98057.313887] Initial branch length optimization
[21:04:38 -82463.862399] Model parameter optimization (eps = 10.000000)
[21:04:55 -82344.625812] AUTODETECT spr round 1 (radius: 5)
[21:05:59 -68193.534367] AUTODETECT spr round 2 (radius: 10)
[21:07:13 -56513.706449] AUTODETECT spr round 3 (radius: 15)
[21:08:35 -50194.492440] AUTODETECT spr round 4 (radius: 20)
[21:10:09 -47684.525130] AUTODETECT spr round 5 (radius: 25)
[21:11:44 -46710.191945] SPR radius for FAST iterations: 25 (autodetect)
[21:11:44 -46710.191945] Model parameter optimization (eps = 3.000000)
[21:11:54 -46579.382186] FAST spr round 1 (radius: 25)
[21:13:41 -43064.858694] FAST spr round 2 (radius: 25)
[21:15:04 -42718.556673] FAST spr round 3 (radius: 25)
[21:16:16 -42578.969132] FAST spr round 4 (radius: 25)
[21:17:22 -42540.586577] FAST spr round 5 (radius: 25)
[21:18:23 -42537.160278] FAST spr round 6 (radius: 25)
[21:19:21 -42537.160164] Model parameter optimization (eps = 1.000000)
[21:19:29 -42533.299744] SLOW spr round 1 (radius: 5)
[21:20:37 -42524.121668] SLOW spr round 2 (radius: 5)
[21:21:42 -42523.655993] SLOW spr round 3 (radius: 5)
[21:22:46 -42523.113343] SLOW spr round 4 (radius: 5)
[21:23:49 -42523.113340] SLOW spr round 5 (radius: 10)
[21:24:54 -42520.219854] SLOW spr round 6 (radius: 5)
[21:26:11 -42519.855874] SLOW spr round 7 (radius: 5)
[21:27:21 -42519.855322] SLOW spr round 8 (radius: 10)
[21:28:31 -42517.985317] SLOW spr round 9 (radius: 5)
[21:29:47 -42517.985203] SLOW spr round 10 (radius: 10)
[21:31:01 -42517.985200] SLOW spr round 11 (radius: 15)
[21:32:43 -42514.815294] SLOW spr round 12 (radius: 5)
[21:34:00 -42514.814356] SLOW spr round 13 (radius: 10)
[21:35:16 -42514.814213] SLOW spr round 14 (radius: 15)
[21:36:54 -42513.580292] SLOW spr round 15 (radius: 5)
[21:38:11 -42513.580271] SLOW spr round 16 (radius: 10)
[21:39:27 -42513.580271] SLOW spr round 17 (radius: 15)
[21:41:08 -42513.440602] SLOW spr round 18 (radius: 5)
[21:42:28 -42510.094386] SLOW spr round 19 (radius: 5)
[21:43:40 -42510.094307] SLOW spr round 20 (radius: 10)
[21:44:50 -42506.355629] SLOW spr round 21 (radius: 5)
[21:46:09 -42500.433463] SLOW spr round 22 (radius: 5)
[21:47:20 -42500.432453] SLOW spr round 23 (radius: 10)
[21:48:30 -42500.432441] SLOW spr round 24 (radius: 15)
[21:50:13 -42500.432440] SLOW spr round 25 (radius: 20)
[21:52:10 -42497.589895] SLOW spr round 26 (radius: 5)
[21:53:32 -42495.476559] SLOW spr round 27 (radius: 5)
[21:54:45 -42495.339981] SLOW spr round 28 (radius: 5)
[21:55:53 -42494.242777] SLOW spr round 29 (radius: 5)
[21:57:01 -42494.242538] SLOW spr round 30 (radius: 10)
[21:58:09 -42494.242535] SLOW spr round 31 (radius: 15)
[21:59:55 -42494.193871] SLOW spr round 32 (radius: 20)
[22:01:51 -42493.920482] SLOW spr round 33 (radius: 5)
[22:03:12 -42493.916528] SLOW spr round 34 (radius: 10)
[22:04:33 -42493.916413] SLOW spr round 35 (radius: 15)
[22:06:14 -42493.865489] SLOW spr round 36 (radius: 20)
[22:08:14 -42411.921691] SLOW spr round 37 (radius: 5)
[22:09:39 -42401.757935] SLOW spr round 38 (radius: 5)
[22:10:56 -42399.646919] SLOW spr round 39 (radius: 5)
[22:12:07 -42394.930413] SLOW spr round 40 (radius: 5)
[22:13:15 -42394.565029] SLOW spr round 41 (radius: 5)
[22:14:23 -42394.564829] SLOW spr round 42 (radius: 10)
[22:15:36 -42387.667467] SLOW spr round 43 (radius: 5)
[22:16:55 -42387.665600] SLOW spr round 44 (radius: 10)
[22:18:08 -42387.665443] SLOW spr round 45 (radius: 15)
[22:19:39 -42382.364000] SLOW spr round 46 (radius: 5)
[22:20:54 -42382.352203] SLOW spr round 47 (radius: 10)
[22:22:10 -42382.352152] SLOW spr round 48 (radius: 15)
[22:23:43 -42382.187706] SLOW spr round 49 (radius: 5)
[22:25:00 -42382.165387] SLOW spr round 50 (radius: 10)
[22:26:16 -42382.164713] SLOW spr round 51 (radius: 15)
[22:27:50 -42382.164529] SLOW spr round 52 (radius: 20)
[22:29:43 -42379.967428] SLOW spr round 53 (radius: 5)
[22:31:02 -42377.612846] SLOW spr round 54 (radius: 5)
[22:32:12 -42377.612791] SLOW spr round 55 (radius: 10)
[22:33:21 -42377.612791] SLOW spr round 56 (radius: 15)
[22:34:58 -42377.612791] SLOW spr round 57 (radius: 20)
[22:36:50 -42377.146975] SLOW spr round 58 (radius: 5)
[22:38:07 -42377.146932] SLOW spr round 59 (radius: 10)
[22:39:24 -42377.146932] SLOW spr round 60 (radius: 15)
[22:40:57 -42377.146932] SLOW spr round 61 (radius: 20)
[22:42:50 -42377.126160] SLOW spr round 62 (radius: 25)
[22:44:51 -42336.320444] SLOW spr round 63 (radius: 5)
[22:46:12 -42306.793723] SLOW spr round 64 (radius: 5)
[22:47:25 -42304.107982] SLOW spr round 65 (radius: 5)
[22:48:32 -42303.315701] SLOW spr round 66 (radius: 5)
[22:49:37 -42303.314411] SLOW spr round 67 (radius: 10)
[22:50:42 -42303.314374] SLOW spr round 68 (radius: 15)
[22:52:23 -42303.314372] SLOW spr round 69 (radius: 20)
[22:54:16 -42301.334220] SLOW spr round 70 (radius: 5)
[22:55:34 -42301.334215] SLOW spr round 71 (radius: 10)
[22:56:52 -42301.334215] SLOW spr round 72 (radius: 15)
[22:58:26 -42301.334215] SLOW spr round 73 (radius: 20)
[23:00:20 -42301.334215] SLOW spr round 74 (radius: 25)
[23:02:21 -42301.334215] Model parameter optimization (eps = 0.100000)

[23:02:25] ML tree search #13, logLikelihood: -42301.104488

[23:02:25 -98514.809059] Initial branch length optimization
[23:02:26 -82803.074170] Model parameter optimization (eps = 10.000000)
[23:02:41 -82651.168330] AUTODETECT spr round 1 (radius: 5)
[23:03:41 -68065.753524] AUTODETECT spr round 2 (radius: 10)
[23:04:51 -55378.152631] AUTODETECT spr round 3 (radius: 15)
[23:06:08 -49943.957248] AUTODETECT spr round 4 (radius: 20)
[23:07:31 -48465.412662] AUTODETECT spr round 5 (radius: 25)
[23:09:01 -47981.286898] SPR radius for FAST iterations: 25 (autodetect)
[23:09:01 -47981.286898] Model parameter optimization (eps = 3.000000)
[23:09:14 -47839.181456] FAST spr round 1 (radius: 25)
[23:10:59 -43124.481577] FAST spr round 2 (radius: 25)
[23:12:19 -42633.479876] FAST spr round 3 (radius: 25)
[23:13:26 -42520.826986] FAST spr round 4 (radius: 25)
[23:14:28 -42447.076008] FAST spr round 5 (radius: 25)
[23:15:25 -42444.034837] FAST spr round 6 (radius: 25)
[23:16:20 -42443.052749] FAST spr round 7 (radius: 25)
[23:17:14 -42443.051841] Model parameter optimization (eps = 1.000000)
[23:17:20 -42439.087397] SLOW spr round 1 (radius: 5)
[23:18:28 -42422.081135] SLOW spr round 2 (radius: 5)
[23:19:35 -42418.199126] SLOW spr round 3 (radius: 5)
[23:20:40 -42416.441636] SLOW spr round 4 (radius: 5)
[23:21:44 -42414.683856] SLOW spr round 5 (radius: 5)
[23:22:48 -42414.682363] SLOW spr round 6 (radius: 10)
[23:23:56 -42410.217399] SLOW spr round 7 (radius: 5)
[23:25:12 -42409.763387] SLOW spr round 8 (radius: 5)
[23:26:22 -42409.760792] SLOW spr round 9 (radius: 10)
[23:27:33 -42404.902226] SLOW spr round 10 (radius: 5)
[23:28:48 -42402.998805] SLOW spr round 11 (radius: 5)
[23:29:57 -42402.805574] SLOW spr round 12 (radius: 5)
[23:31:03 -42402.805016] SLOW spr round 13 (radius: 10)
[23:32:12 -42401.684341] SLOW spr round 14 (radius: 5)
[23:33:27 -42401.563034] SLOW spr round 15 (radius: 5)
[23:34:37 -42401.562972] SLOW spr round 16 (radius: 10)
[23:35:44 -42401.562972] SLOW spr round 17 (radius: 15)
[23:37:30 -42398.931926] SLOW spr round 18 (radius: 5)
[23:38:47 -42391.974152] SLOW spr round 19 (radius: 5)
[23:39:59 -42389.190627] SLOW spr round 20 (radius: 5)
[23:41:06 -42387.575429] SLOW spr round 21 (radius: 5)
[23:42:11 -42387.573513] SLOW spr round 22 (radius: 10)
[23:43:17 -42385.832553] SLOW spr round 23 (radius: 5)
[23:44:33 -42383.672946] SLOW spr round 24 (radius: 5)
[23:45:41 -42383.672299] SLOW spr round 25 (radius: 10)
[23:46:50 -42382.458517] SLOW spr round 26 (radius: 5)
[23:48:06 -42377.722034] SLOW spr round 27 (radius: 5)
[23:49:16 -42374.453423] SLOW spr round 28 (radius: 5)
[23:50:23 -42374.007156] SLOW spr round 29 (radius: 5)
[23:51:29 -42373.546266] SLOW spr round 30 (radius: 5)
[23:52:33 -42373.545131] SLOW spr round 31 (radius: 10)
[23:53:39 -42371.396981] SLOW spr round 32 (radius: 5)
[23:54:54 -42371.284910] SLOW spr round 33 (radius: 5)
[23:56:02 -42371.284728] SLOW spr round 34 (radius: 10)
[23:57:09 -42371.284726] SLOW spr round 35 (radius: 15)
[23:58:54 -42367.119595] SLOW spr round 36 (radius: 5)
[24:00:09 -42366.043933] SLOW spr round 37 (radius: 5)
[24:01:18 -42365.860288] SLOW spr round 38 (radius: 5)
[24:02:24 -42365.859980] SLOW spr round 39 (radius: 10)
[24:03:29 -42365.857694] SLOW spr round 40 (radius: 15)
[24:05:17 -42364.425099] SLOW spr round 41 (radius: 5)
[24:06:34 -42359.436114] SLOW spr round 42 (radius: 5)
[24:07:43 -42359.419035] SLOW spr round 43 (radius: 10)
[24:08:50 -42359.418887] SLOW spr round 44 (radius: 15)
[24:10:36 -42359.277157] SLOW spr round 45 (radius: 5)
[24:11:52 -42358.795548] SLOW spr round 46 (radius: 5)
[24:12:59 -42358.794686] SLOW spr round 47 (radius: 10)
[24:14:06 -42355.828768] SLOW spr round 48 (radius: 5)
[24:15:18 -42355.828231] SLOW spr round 49 (radius: 10)
[24:16:30 -42355.827704] SLOW spr round 50 (radius: 15)
[24:18:11 -42355.288879] SLOW spr round 51 (radius: 5)
[24:19:27 -42354.329873] SLOW spr round 52 (radius: 5)
[24:20:39 -42353.609648] SLOW spr round 53 (radius: 5)
[24:21:45 -42353.609023] SLOW spr round 54 (radius: 10)
[24:22:51 -42353.608410] SLOW spr round 55 (radius: 15)
[24:24:38 -42352.269495] SLOW spr round 56 (radius: 5)
[24:25:53 -42351.886175] SLOW spr round 57 (radius: 5)
[24:27:03 -42351.885500] SLOW spr round 58 (radius: 10)
[24:28:11 -42349.914896] SLOW spr round 59 (radius: 5)
[24:29:25 -42349.913696] SLOW spr round 60 (radius: 10)
[24:30:37 -42349.913088] SLOW spr round 61 (radius: 15)
[24:32:18 -42349.420486] SLOW spr round 62 (radius: 5)
[24:33:34 -42347.784486] SLOW spr round 63 (radius: 5)
[24:34:44 -42347.765318] SLOW spr round 64 (radius: 10)
[24:35:52 -42345.006130] SLOW spr round 65 (radius: 5)
[24:37:06 -42341.903403] SLOW spr round 66 (radius: 5)
[24:38:14 -42339.786463] SLOW spr round 67 (radius: 5)
[24:39:19 -42339.785598] SLOW spr round 68 (radius: 10)
[24:40:25 -42339.225533] SLOW spr round 69 (radius: 5)
[24:41:40 -42339.224979] SLOW spr round 70 (radius: 10)
[24:42:53 -42339.224458] SLOW spr round 71 (radius: 15)
[24:44:35 -42339.223939] SLOW spr round 72 (radius: 20)
[24:46:43 -42338.106264] SLOW spr round 73 (radius: 5)
[24:48:01 -42338.101334] SLOW spr round 74 (radius: 10)
[24:49:18 -42338.100451] SLOW spr round 75 (radius: 15)
[24:50:58 -42337.877455] SLOW spr round 76 (radius: 5)
[24:52:14 -42337.007543] SLOW spr round 77 (radius: 5)
[24:53:25 -42336.966078] SLOW spr round 78 (radius: 10)
[24:54:34 -42335.702643] SLOW spr round 79 (radius: 5)
[24:55:49 -42335.497823] SLOW spr round 80 (radius: 5)
[24:56:57 -42335.497779] SLOW spr round 81 (radius: 10)
[24:58:03 -42335.497779] SLOW spr round 82 (radius: 15)
[24:59:49 -42335.497779] SLOW spr round 83 (radius: 20)
[25:01:57 -42335.497779] SLOW spr round 84 (radius: 25)
[25:04:07 -42333.412341] SLOW spr round 85 (radius: 5)
[25:05:24 -42333.412118] SLOW spr round 86 (radius: 10)
[25:06:42 -42333.412104] SLOW spr round 87 (radius: 15)
[25:08:21 -42333.412103] SLOW spr round 88 (radius: 20)
[25:10:27 -42333.412102] SLOW spr round 89 (radius: 25)
[25:12:36 -42333.016389] SLOW spr round 90 (radius: 5)
[25:13:57 -42333.015845] SLOW spr round 91 (radius: 10)
[25:15:18 -42332.595786] SLOW spr round 92 (radius: 5)
[25:16:34 -42332.595562] SLOW spr round 93 (radius: 10)
[25:17:47 -42331.705956] SLOW spr round 94 (radius: 5)
[25:19:03 -42331.705954] SLOW spr round 95 (radius: 10)
[25:20:17 -42327.449137] SLOW spr round 96 (radius: 5)
[25:21:33 -42327.448765] SLOW spr round 97 (radius: 10)
[25:22:47 -42327.448763] SLOW spr round 98 (radius: 15)
[25:24:33 -42327.088232] SLOW spr round 99 (radius: 5)
[25:25:51 -42327.088110] SLOW spr round 100 (radius: 10)
[25:27:08 -42327.088109] SLOW spr round 101 (radius: 15)
[25:28:52 -42327.088109] SLOW spr round 102 (radius: 20)
[25:31:04 -42325.302090] SLOW spr round 103 (radius: 5)
[25:32:24 -42323.761091] SLOW spr round 104 (radius: 5)
[25:33:36 -42323.761090] SLOW spr round 105 (radius: 10)
[25:34:47 -42323.761090] SLOW spr round 106 (radius: 15)
[25:36:36 -42323.761090] SLOW spr round 107 (radius: 20)
[25:38:45 -42323.761090] SLOW spr round 108 (radius: 25)
[25:40:59 -42323.761090] Model parameter optimization (eps = 0.100000)

[25:41:05] ML tree search #14, logLikelihood: -42323.549875

[25:41:05 -98434.559161] Initial branch length optimization
[25:41:06 -82654.422955] Model parameter optimization (eps = 10.000000)
[25:41:18 -82523.640261] AUTODETECT spr round 1 (radius: 5)
[25:42:20 -67808.964212] AUTODETECT spr round 2 (radius: 10)
[25:43:35 -55600.236506] AUTODETECT spr round 3 (radius: 15)
[25:44:53 -50968.194545] AUTODETECT spr round 4 (radius: 20)
[25:46:20 -47732.649736] AUTODETECT spr round 5 (radius: 25)
[25:48:01 -46489.060461] SPR radius for FAST iterations: 25 (autodetect)
[25:48:01 -46489.060461] Model parameter optimization (eps = 3.000000)
[25:48:11 -46336.660914] FAST spr round 1 (radius: 25)
[25:49:54 -42925.390995] FAST spr round 2 (radius: 25)
[25:51:11 -42597.208885] FAST spr round 3 (radius: 25)
[25:52:19 -42537.400446] FAST spr round 4 (radius: 25)
[25:53:23 -42523.934622] FAST spr round 5 (radius: 25)
[25:54:22 -42518.094234] FAST spr round 6 (radius: 25)
[25:55:19 -42518.093886] Model parameter optimization (eps = 1.000000)
[25:55:28 -42515.927072] SLOW spr round 1 (radius: 5)
[25:56:38 -42497.808688] SLOW spr round 2 (radius: 5)
[25:57:47 -42495.419764] SLOW spr round 3 (radius: 5)
[25:58:55 -42495.039108] SLOW spr round 4 (radius: 5)
[26:00:02 -42495.038577] SLOW spr round 5 (radius: 10)
[26:01:12 -42485.675334] SLOW spr round 6 (radius: 5)
[26:02:31 -42481.514860] SLOW spr round 7 (radius: 5)
[26:03:43 -42481.514558] SLOW spr round 8 (radius: 10)
[26:04:54 -42479.288602] SLOW spr round 9 (radius: 5)
[26:06:12 -42478.912750] SLOW spr round 10 (radius: 5)
[26:07:24 -42478.892254] SLOW spr round 11 (radius: 10)
[26:08:34 -42478.892174] SLOW spr round 12 (radius: 15)
[26:10:19 -42475.038076] SLOW spr round 13 (radius: 5)
[26:11:41 -42472.858530] SLOW spr round 14 (radius: 5)
[26:12:54 -42472.857627] SLOW spr round 15 (radius: 10)
[26:14:05 -42472.857194] SLOW spr round 16 (radius: 15)
[26:15:49 -42470.946572] SLOW spr round 17 (radius: 5)
[26:17:08 -42470.321078] SLOW spr round 18 (radius: 5)
[26:18:20 -42470.321029] SLOW spr round 19 (radius: 10)
[26:19:31 -42470.321025] SLOW spr round 20 (radius: 15)
[26:21:15 -42468.606132] SLOW spr round 21 (radius: 5)
[26:22:34 -42468.606086] SLOW spr round 22 (radius: 10)
[26:23:51 -42468.606083] SLOW spr round 23 (radius: 15)
[26:25:32 -42468.548742] SLOW spr round 24 (radius: 20)
[26:27:34 -42464.892412] SLOW spr round 25 (radius: 5)
[26:28:55 -42463.400959] SLOW spr round 26 (radius: 5)
[26:30:08 -42463.400882] SLOW spr round 27 (radius: 10)
[26:31:19 -42462.858306] SLOW spr round 28 (radius: 5)
[26:32:36 -42462.858289] SLOW spr round 29 (radius: 10)
[26:33:50 -42462.858286] SLOW spr round 30 (radius: 15)
[26:35:31 -42462.153949] SLOW spr round 31 (radius: 5)
[26:36:49 -42462.153944] SLOW spr round 32 (radius: 10)
[26:38:07 -42462.153941] SLOW spr round 33 (radius: 15)
[26:39:46 -42462.153938] SLOW spr round 34 (radius: 20)
[26:41:45 -42461.055173] SLOW spr round 35 (radius: 5)
[26:43:05 -42461.050158] SLOW spr round 36 (radius: 10)
[26:44:24 -42461.048966] SLOW spr round 37 (radius: 15)
[26:46:03 -42461.048664] SLOW spr round 38 (radius: 20)
[26:48:02 -42460.880719] SLOW spr round 39 (radius: 5)
[26:49:24 -42457.838568] SLOW spr round 40 (radius: 5)
[26:50:37 -42457.838515] SLOW spr round 41 (radius: 10)
[26:51:49 -42457.838511] SLOW spr round 42 (radius: 15)
[26:53:31 -42457.838508] SLOW spr round 43 (radius: 20)
[26:55:29 -42361.716148] SLOW spr round 44 (radius: 5)
[26:56:50 -42360.422087] SLOW spr round 45 (radius: 5)
[26:58:03 -42360.421579] SLOW spr round 46 (radius: 10)
[26:59:15 -42360.421567] SLOW spr round 47 (radius: 15)
[27:00:57 -42360.421562] SLOW spr round 48 (radius: 20)
[27:02:56 -42360.421559] SLOW spr round 49 (radius: 25)
[27:04:59 -42359.728744] SLOW spr round 50 (radius: 5)
[27:06:20 -42359.726855] SLOW spr round 51 (radius: 10)
[27:07:40 -42359.726830] SLOW spr round 52 (radius: 15)
[27:09:19 -42359.726827] SLOW spr round 53 (radius: 20)
[27:11:18 -42359.726818] SLOW spr round 54 (radius: 25)
[27:13:22 -42359.323391] SLOW spr round 55 (radius: 5)
[27:14:42 -42359.323331] SLOW spr round 56 (radius: 10)
[27:16:03 -42359.323322] SLOW spr round 57 (radius: 15)
[27:17:42 -42359.323317] SLOW spr round 58 (radius: 20)
[27:19:41 -42359.323314] SLOW spr round 59 (radius: 25)
[27:21:45 -42359.323311] Model parameter optimization (eps = 0.100000)

[27:21:49] ML tree search #15, logLikelihood: -42359.181122

[27:21:49 -98583.062463] Initial branch length optimization
[27:21:50 -82844.688480] Model parameter optimization (eps = 10.000000)
[27:22:05 -82687.699715] AUTODETECT spr round 1 (radius: 5)
[27:23:08 -69333.882507] AUTODETECT spr round 2 (radius: 10)
[27:24:23 -56154.267277] AUTODETECT spr round 3 (radius: 15)
[27:25:42 -52213.297782] AUTODETECT spr round 4 (radius: 20)
[27:27:05 -50019.169702] AUTODETECT spr round 5 (radius: 25)
[27:28:40 -47840.109712] SPR radius for FAST iterations: 25 (autodetect)
[27:28:40 -47840.109712] Model parameter optimization (eps = 3.000000)
[27:28:52 -47713.322594] FAST spr round 1 (radius: 25)
[27:30:39 -43133.039371] FAST spr round 2 (radius: 25)
[27:32:02 -42508.842242] FAST spr round 3 (radius: 25)
[27:33:12 -42419.154877] FAST spr round 4 (radius: 25)
[27:34:18 -42395.166700] FAST spr round 5 (radius: 25)
[27:35:19 -42390.484096] FAST spr round 6 (radius: 25)
[27:36:18 -42384.403635] FAST spr round 7 (radius: 25)
[27:37:15 -42384.345958] Model parameter optimization (eps = 1.000000)
[27:37:24 -42380.186424] SLOW spr round 1 (radius: 5)
[27:38:34 -42374.167672] SLOW spr round 2 (radius: 5)
[27:39:42 -42373.978629] SLOW spr round 3 (radius: 5)
[27:40:49 -42373.978302] SLOW spr round 4 (radius: 10)
[27:42:00 -42367.941080] SLOW spr round 5 (radius: 5)
[27:43:18 -42367.130191] SLOW spr round 6 (radius: 5)
[27:44:31 -42367.111831] SLOW spr round 7 (radius: 10)
[27:45:43 -42364.934261] SLOW spr round 8 (radius: 5)
[27:47:03 -42357.617749] SLOW spr round 9 (radius: 5)
[27:48:17 -42349.495287] SLOW spr round 10 (radius: 5)
[27:49:28 -42346.422538] SLOW spr round 11 (radius: 5)
[27:50:38 -42344.142102] SLOW spr round 12 (radius: 5)
[27:51:45 -42344.142044] SLOW spr round 13 (radius: 10)
[27:52:54 -42342.757677] SLOW spr round 14 (radius: 5)
[27:54:12 -42342.757645] SLOW spr round 15 (radius: 10)
[27:55:28 -42341.503836] SLOW spr round 16 (radius: 5)
[27:56:46 -42340.802563] SLOW spr round 17 (radius: 5)
[27:57:57 -42340.800639] SLOW spr round 18 (radius: 10)
[27:59:09 -42339.610800] SLOW spr round 19 (radius: 5)
[28:00:27 -42338.579431] SLOW spr round 20 (radius: 5)
[28:01:39 -42338.576922] SLOW spr round 21 (radius: 10)
[28:02:50 -42338.576508] SLOW spr round 22 (radius: 15)
[28:04:39 -42331.189210] SLOW spr round 23 (radius: 5)
[28:05:58 -42330.253951] SLOW spr round 24 (radius: 5)
[28:07:11 -42330.253892] SLOW spr round 25 (radius: 10)
[28:08:23 -42330.253886] SLOW spr round 26 (radius: 15)
[28:10:10 -42329.972158] SLOW spr round 27 (radius: 5)
[28:11:29 -42329.923967] SLOW spr round 28 (radius: 10)
[28:12:48 -42329.923438] SLOW spr round 29 (radius: 15)
[28:14:32 -42329.865896] SLOW spr round 30 (radius: 20)
[28:16:42 -42326.199575] SLOW spr round 31 (radius: 5)
[28:18:04 -42323.037977] SLOW spr round 32 (radius: 5)
[28:19:19 -42321.990699] SLOW spr round 33 (radius: 5)
[28:20:29 -42321.990619] SLOW spr round 34 (radius: 10)
[28:21:39 -42319.086299] SLOW spr round 35 (radius: 5)
[28:22:56 -42319.086279] SLOW spr round 36 (radius: 10)
[28:24:13 -42319.086276] SLOW spr round 37 (radius: 15)
[28:25:56 -42318.967799] SLOW spr round 38 (radius: 5)
[28:27:15 -42318.967606] SLOW spr round 39 (radius: 10)
[28:28:35 -42318.967598] SLOW spr round 40 (radius: 15)
[28:30:18 -42318.967595] SLOW spr round 41 (radius: 20)
[28:32:29 -42318.028782] SLOW spr round 42 (radius: 5)
[28:33:50 -42316.466500] SLOW spr round 43 (radius: 5)
[28:35:03 -42316.136500] SLOW spr round 44 (radius: 5)
[28:36:12 -42316.136470] SLOW spr round 45 (radius: 10)
[28:37:23 -42316.136469] SLOW spr round 46 (radius: 15)
[28:39:12 -42316.136469] SLOW spr round 47 (radius: 20)
[28:41:24 -42315.044386] SLOW spr round 48 (radius: 5)
[28:42:44 -42315.042885] SLOW spr round 49 (radius: 10)
[28:44:05 -42315.042745] SLOW spr round 50 (radius: 15)
[28:45:48 -42315.042732] SLOW spr round 51 (radius: 20)
[28:48:01 -42315.042726] SLOW spr round 52 (radius: 25)
[28:50:37 -42314.102471] SLOW spr round 53 (radius: 5)
[28:51:59 -42309.635434] SLOW spr round 54 (radius: 5)
[28:53:13 -42309.487977] SLOW spr round 55 (radius: 5)
[28:54:22 -42309.487647] SLOW spr round 56 (radius: 10)
[28:55:34 -42308.963881] SLOW spr round 57 (radius: 5)
[28:56:53 -42306.077346] SLOW spr round 58 (radius: 5)
[28:58:06 -42304.770264] SLOW spr round 59 (radius: 5)
[28:59:16 -42304.282563] SLOW spr round 60 (radius: 5)
[29:00:24 -42304.281203] SLOW spr round 61 (radius: 10)
[29:01:34 -42304.280859] SLOW spr round 62 (radius: 15)
[29:03:25 -42304.280755] SLOW spr round 63 (radius: 20)
[29:05:41 -42302.370268] SLOW spr round 64 (radius: 5)
[29:07:02 -42302.324163] SLOW spr round 65 (radius: 10)
[29:08:24 -42302.324122] SLOW spr round 66 (radius: 15)
[29:10:08 -42302.324118] SLOW spr round 67 (radius: 20)
[29:12:24 -42302.324117] SLOW spr round 68 (radius: 25)
[29:15:06 -42296.882320] SLOW spr round 69 (radius: 5)
[29:16:30 -42291.602362] SLOW spr round 70 (radius: 5)
[29:17:44 -42290.565572] SLOW spr round 71 (radius: 5)
[29:18:54 -42290.565136] SLOW spr round 72 (radius: 10)
[29:20:04 -42290.565110] SLOW spr round 73 (radius: 15)
[29:21:53 -42287.451874] SLOW spr round 74 (radius: 5)
[29:23:13 -42286.221709] SLOW spr round 75 (radius: 5)
[29:24:26 -42286.221275] SLOW spr round 76 (radius: 10)
[29:25:39 -42286.221054] SLOW spr round 77 (radius: 15)
[29:27:26 -42286.182041] SLOW spr round 78 (radius: 20)
[29:29:39 -42246.280841] SLOW spr round 79 (radius: 5)
[29:31:01 -42225.910312] SLOW spr round 80 (radius: 5)
[29:32:15 -42225.910006] SLOW spr round 81 (radius: 10)
[29:33:29 -42225.909999] SLOW spr round 82 (radius: 15)
[29:35:15 -42225.909999] SLOW spr round 83 (radius: 20)
[29:37:27 -42225.909999] SLOW spr round 84 (radius: 25)
[29:39:59 -42225.909999] Model parameter optimization (eps = 0.100000)

[29:40:02] ML tree search #16, logLikelihood: -42225.878630

[29:40:02 -98114.335251] Initial branch length optimization
[29:40:02 -82508.308576] Model parameter optimization (eps = 10.000000)
[29:40:21 -82336.401281] AUTODETECT spr round 1 (radius: 5)
[29:41:23 -67733.351710] AUTODETECT spr round 2 (radius: 10)
[29:42:38 -56084.036733] AUTODETECT spr round 3 (radius: 15)
[29:44:00 -49719.102063] AUTODETECT spr round 4 (radius: 20)
[29:45:28 -47834.808661] AUTODETECT spr round 5 (radius: 25)
[29:47:01 -47055.042128] SPR radius for FAST iterations: 25 (autodetect)
[29:47:01 -47055.042128] Model parameter optimization (eps = 3.000000)
[29:47:11 -46927.664730] FAST spr round 1 (radius: 25)
[29:48:59 -43163.373170] FAST spr round 2 (radius: 25)
[29:50:22 -42918.901154] FAST spr round 3 (radius: 25)
[29:51:34 -42779.814585] FAST spr round 4 (radius: 25)
[29:52:42 -42731.959275] FAST spr round 5 (radius: 25)
[29:53:42 -42731.492144] FAST spr round 6 (radius: 25)
[29:54:40 -42731.491910] Model parameter optimization (eps = 1.000000)
[29:54:48 -42728.376213] SLOW spr round 1 (radius: 5)
[29:56:00 -42711.201029] SLOW spr round 2 (radius: 5)
[29:57:11 -42706.140281] SLOW spr round 3 (radius: 5)
[29:58:21 -42705.488761] SLOW spr round 4 (radius: 5)
[29:59:29 -42705.488415] SLOW spr round 5 (radius: 10)
[30:00:40 -42703.107624] SLOW spr round 6 (radius: 5)
[30:02:00 -42702.414607] SLOW spr round 7 (radius: 5)
[30:03:13 -42702.414521] SLOW spr round 8 (radius: 10)
[30:04:25 -42702.414503] SLOW spr round 9 (radius: 15)
[30:06:16 -42698.529305] SLOW spr round 10 (radius: 5)
[30:07:37 -42698.347014] SLOW spr round 11 (radius: 5)
[30:08:51 -42698.346427] SLOW spr round 12 (radius: 10)
[30:10:04 -42697.097336] SLOW spr round 13 (radius: 5)
[30:11:23 -42697.057985] SLOW spr round 14 (radius: 10)
[30:12:40 -42696.883053] SLOW spr round 15 (radius: 5)
[30:13:58 -42696.882984] SLOW spr round 16 (radius: 10)
[30:15:15 -42696.882982] SLOW spr round 17 (radius: 15)
[30:17:04 -42693.305875] SLOW spr round 18 (radius: 5)
[30:18:27 -42692.778715] SLOW spr round 19 (radius: 5)
[30:19:41 -42692.778576] SLOW spr round 20 (radius: 10)
[30:20:55 -42692.778567] SLOW spr round 21 (radius: 15)
[30:22:47 -42691.873442] SLOW spr round 22 (radius: 5)
[30:24:09 -42689.817481] SLOW spr round 23 (radius: 5)
[30:25:23 -42689.763515] SLOW spr round 24 (radius: 10)
[30:26:36 -42689.675589] SLOW spr round 25 (radius: 15)
[30:28:28 -42689.191459] SLOW spr round 26 (radius: 5)
[30:29:50 -42688.139256] SLOW spr round 27 (radius: 5)
[30:31:03 -42688.138637] SLOW spr round 28 (radius: 10)
[30:32:16 -42688.138611] SLOW spr round 29 (radius: 15)
[30:34:06 -42687.513162] SLOW spr round 30 (radius: 5)
[30:35:27 -42687.512957] SLOW spr round 31 (radius: 10)
[30:36:46 -42685.371076] SLOW spr round 32 (radius: 5)
[30:38:03 -42685.371011] SLOW spr round 33 (radius: 10)
[30:39:18 -42685.371011] SLOW spr round 34 (radius: 15)
[30:41:05 -42685.371011] SLOW spr round 35 (radius: 20)
[30:43:09 -42684.360861] SLOW spr round 36 (radius: 5)
[30:44:31 -42684.103330] SLOW spr round 37 (radius: 5)
[30:45:44 -42684.103328] SLOW spr round 38 (radius: 10)
[30:46:57 -42684.103328] SLOW spr round 39 (radius: 15)
[30:48:45 -42683.211215] SLOW spr round 40 (radius: 5)
[30:50:04 -42683.211159] SLOW spr round 41 (radius: 10)
[30:51:23 -42683.211156] SLOW spr round 42 (radius: 15)
[30:53:08 -42683.211156] SLOW spr round 43 (radius: 20)
[30:55:10 -42683.211156] SLOW spr round 44 (radius: 25)
[30:57:18 -42683.089920] SLOW spr round 45 (radius: 5)
[30:58:41 -42681.330965] SLOW spr round 46 (radius: 5)
[30:59:56 -42681.330493] SLOW spr round 47 (radius: 10)
[31:01:09 -42681.330440] SLOW spr round 48 (radius: 15)
[31:02:57 -42681.330434] SLOW spr round 49 (radius: 20)
[31:04:59 -42679.628383] SLOW spr round 50 (radius: 5)
[31:06:21 -42679.327530] SLOW spr round 51 (radius: 5)
[31:07:35 -42679.327446] SLOW spr round 52 (radius: 10)
[31:08:47 -42679.327446] SLOW spr round 53 (radius: 15)
[31:10:35 -42679.327446] SLOW spr round 54 (radius: 20)
[31:12:37 -42679.327446] SLOW spr round 55 (radius: 25)
[31:14:44 -42678.937463] SLOW spr round 56 (radius: 5)
[31:16:05 -42678.909691] SLOW spr round 57 (radius: 10)
[31:17:28 -42678.909486] SLOW spr round 58 (radius: 15)
[31:19:13 -42678.909484] SLOW spr round 59 (radius: 20)
[31:21:16 -42678.847397] SLOW spr round 60 (radius: 25)
[31:23:22 -42678.847031] Model parameter optimization (eps = 0.100000)

[31:23:26] ML tree search #17, logLikelihood: -42678.816015

[31:23:26 -98428.478336] Initial branch length optimization
[31:23:27 -82658.126059] Model parameter optimization (eps = 10.000000)
[31:23:42 -82488.681014] AUTODETECT spr round 1 (radius: 5)
[31:24:45 -68904.057965] AUTODETECT spr round 2 (radius: 10)
[31:25:58 -55908.596189] AUTODETECT spr round 3 (radius: 15)
[31:27:14 -50630.308929] AUTODETECT spr round 4 (radius: 20)
[31:28:43 -46994.847226] AUTODETECT spr round 5 (radius: 25)
[31:30:22 -46121.923984] SPR radius for FAST iterations: 25 (autodetect)
[31:30:22 -46121.923984] Model parameter optimization (eps = 3.000000)
[31:30:31 -46006.519741] FAST spr round 1 (radius: 25)
[31:32:17 -42854.817137] FAST spr round 2 (radius: 25)
[31:33:40 -42530.488562] FAST spr round 3 (radius: 25)
[31:34:52 -42397.701780] FAST spr round 4 (radius: 25)
[31:35:58 -42372.270419] FAST spr round 5 (radius: 25)
[31:36:58 -42368.012868] FAST spr round 6 (radius: 25)
[31:37:56 -42368.012475] Model parameter optimization (eps = 1.000000)
[31:38:02 -42366.095576] SLOW spr round 1 (radius: 5)
[31:39:15 -42351.444811] SLOW spr round 2 (radius: 5)
[31:40:26 -42348.798546] SLOW spr round 3 (radius: 5)
[31:41:36 -42347.974660] SLOW spr round 4 (radius: 5)
[31:42:44 -42347.974631] SLOW spr round 5 (radius: 10)
[31:43:55 -42342.631996] SLOW spr round 6 (radius: 5)
[31:45:16 -42338.531129] SLOW spr round 7 (radius: 5)
[31:46:30 -42338.531094] SLOW spr round 8 (radius: 10)
[31:47:44 -42337.360224] SLOW spr round 9 (radius: 5)
[31:49:06 -42335.829868] SLOW spr round 10 (radius: 5)
[31:50:20 -42335.828038] SLOW spr round 11 (radius: 10)
[31:51:35 -42335.340523] SLOW spr round 12 (radius: 5)
[31:52:55 -42335.339932] SLOW spr round 13 (radius: 10)
[31:54:14 -42335.170222] SLOW spr round 14 (radius: 5)
[31:55:35 -42334.841070] SLOW spr round 15 (radius: 5)
[31:56:50 -42333.618952] SLOW spr round 16 (radius: 5)
[31:57:59 -42333.618940] SLOW spr round 17 (radius: 10)
[31:59:11 -42333.420924] SLOW spr round 18 (radius: 5)
[32:00:32 -42332.923252] SLOW spr round 19 (radius: 5)
[32:01:47 -42332.835760] SLOW spr round 20 (radius: 10)
[32:03:01 -42332.787660] SLOW spr round 21 (radius: 15)
[32:05:04 -42332.091062] SLOW spr round 22 (radius: 5)
[32:06:29 -42330.915315] SLOW spr round 23 (radius: 5)
[32:07:45 -42330.870529] SLOW spr round 24 (radius: 10)
[32:09:00 -42330.869945] SLOW spr round 25 (radius: 15)
[32:11:01 -42330.509249] SLOW spr round 26 (radius: 5)
[32:12:25 -42329.460454] SLOW spr round 27 (radius: 5)
[32:13:41 -42329.458091] SLOW spr round 28 (radius: 10)
[32:14:57 -42329.458090] SLOW spr round 29 (radius: 15)
[32:16:59 -42328.996310] SLOW spr round 30 (radius: 5)
[32:18:22 -42328.996192] SLOW spr round 31 (radius: 10)
[32:19:46 -42328.996189] SLOW spr round 32 (radius: 15)
[32:21:43 -42327.419694] SLOW spr round 33 (radius: 5)
[32:23:08 -42325.709045] SLOW spr round 34 (radius: 5)
[32:24:23 -42325.359610] SLOW spr round 35 (radius: 5)
[32:25:34 -42325.359604] SLOW spr round 36 (radius: 10)
[32:26:47 -42325.359603] SLOW spr round 37 (radius: 15)
[32:28:52 -42325.248273] SLOW spr round 38 (radius: 5)
[32:30:15 -42324.907553] SLOW spr round 39 (radius: 5)
[32:31:31 -42324.907238] SLOW spr round 40 (radius: 10)
[32:32:46 -42324.907225] SLOW spr round 41 (radius: 15)
[32:34:49 -42324.062793] SLOW spr round 42 (radius: 5)
[32:36:11 -42324.062757] SLOW spr round 43 (radius: 10)
[32:37:34 -42324.062756] SLOW spr round 44 (radius: 15)
[32:39:31 -42324.062755] SLOW spr round 45 (radius: 20)
[32:42:03 -42324.062753] SLOW spr round 46 (radius: 25)
[32:44:49 -42322.110047] SLOW spr round 47 (radius: 5)
[32:46:15 -42321.825018] SLOW spr round 48 (radius: 5)
[32:47:31 -42321.824995] SLOW spr round 49 (radius: 10)
[32:48:47 -42321.824993] SLOW spr round 50 (radius: 15)
[32:50:47 -42321.824992] SLOW spr round 51 (radius: 20)
[32:53:16 -42321.824991] SLOW spr round 52 (radius: 25)
[32:56:01 -42321.824990] Model parameter optimization (eps = 0.100000)

[32:56:09] ML tree search #18, logLikelihood: -42321.693236

[32:56:09 -98296.825754] Initial branch length optimization
[32:56:10 -82676.480199] Model parameter optimization (eps = 10.000000)
[32:56:34 -82518.959656] AUTODETECT spr round 1 (radius: 5)
[32:57:38 -68117.665537] AUTODETECT spr round 2 (radius: 10)
[32:58:52 -55669.477373] AUTODETECT spr round 3 (radius: 15)
[33:00:11 -50747.065571] AUTODETECT spr round 4 (radius: 20)
[33:01:37 -48685.441075] AUTODETECT spr round 5 (radius: 25)
[33:03:09 -47506.360947] SPR radius for FAST iterations: 25 (autodetect)
[33:03:09 -47506.360947] Model parameter optimization (eps = 3.000000)
[33:03:19 -47407.818165] FAST spr round 1 (radius: 25)
[33:05:05 -43322.576882] FAST spr round 2 (radius: 25)
[33:06:27 -42751.404754] FAST spr round 3 (radius: 25)
[33:07:38 -42565.645887] FAST spr round 4 (radius: 25)
[33:08:44 -42499.425874] FAST spr round 5 (radius: 25)
[33:09:46 -42476.801419] FAST spr round 6 (radius: 25)
[33:10:45 -42473.094754] FAST spr round 7 (radius: 25)
[33:11:42 -42472.414609] FAST spr round 8 (radius: 25)
[33:12:39 -42472.413972] Model parameter optimization (eps = 1.000000)
[33:12:45 -42468.538385] SLOW spr round 1 (radius: 5)
[33:13:57 -42460.020668] SLOW spr round 2 (radius: 5)
[33:15:08 -42456.057330] SLOW spr round 3 (radius: 5)
[33:16:17 -42455.994184] SLOW spr round 4 (radius: 10)
[33:17:28 -42454.578960] SLOW spr round 5 (radius: 5)
[33:18:48 -42454.578451] SLOW spr round 6 (radius: 10)
[33:20:06 -42454.554584] SLOW spr round 7 (radius: 15)
[33:21:58 -42450.647379] SLOW spr round 8 (radius: 5)
[33:23:21 -42450.184058] SLOW spr round 9 (radius: 5)
[33:24:36 -42450.139414] SLOW spr round 10 (radius: 10)
[33:25:49 -42450.137411] SLOW spr round 11 (radius: 15)
[33:27:42 -42448.673620] SLOW spr round 12 (radius: 5)
[33:29:04 -42448.214437] SLOW spr round 13 (radius: 5)
[33:30:18 -42448.214352] SLOW spr round 14 (radius: 10)
[33:31:31 -42448.214319] SLOW spr round 15 (radius: 15)
[33:33:25 -42447.898351] SLOW spr round 16 (radius: 5)
[33:34:47 -42447.898185] SLOW spr round 17 (radius: 10)
[33:36:07 -42447.783632] SLOW spr round 18 (radius: 5)
[33:37:25 -42447.783387] SLOW spr round 19 (radius: 10)
[33:38:41 -42447.783384] SLOW spr round 20 (radius: 15)
[33:40:34 -42444.659171] SLOW spr round 21 (radius: 5)
[33:41:57 -42443.566917] SLOW spr round 22 (radius: 5)
[33:43:11 -42443.566716] SLOW spr round 23 (radius: 10)
[33:44:24 -42443.566711] SLOW spr round 24 (radius: 15)
[33:46:20 -42443.424489] SLOW spr round 25 (radius: 5)
[33:47:41 -42443.407490] SLOW spr round 26 (radius: 10)
[33:49:01 -42443.406419] SLOW spr round 27 (radius: 15)
[33:50:51 -42443.406152] SLOW spr round 28 (radius: 20)
[33:53:11 -42440.378907] SLOW spr round 29 (radius: 5)
[33:54:35 -42436.989772] SLOW spr round 30 (radius: 5)
[33:55:50 -42436.989163] SLOW spr round 31 (radius: 10)
[33:57:05 -42433.809450] SLOW spr round 32 (radius: 5)
[33:58:24 -42433.809179] SLOW spr round 33 (radius: 10)
[33:59:44 -42415.744552] SLOW spr round 34 (radius: 5)
[34:01:05 -42372.630316] SLOW spr round 35 (radius: 5)
[34:02:18 -42372.626891] SLOW spr round 36 (radius: 10)
[34:03:29 -42372.626111] SLOW spr round 37 (radius: 15)
[34:05:25 -42372.198885] SLOW spr round 38 (radius: 5)
[34:06:45 -42372.198856] SLOW spr round 39 (radius: 10)
[34:08:05 -42372.198849] SLOW spr round 40 (radius: 15)
[34:09:54 -42372.198847] SLOW spr round 41 (radius: 20)
[34:12:13 -42370.588595] SLOW spr round 42 (radius: 5)
[34:13:35 -42370.585562] SLOW spr round 43 (radius: 10)
[34:14:57 -42369.808933] SLOW spr round 44 (radius: 5)
[34:16:15 -42369.808884] SLOW spr round 45 (radius: 10)
[34:17:30 -42369.808879] SLOW spr round 46 (radius: 15)
[34:19:22 -42369.808878] SLOW spr round 47 (radius: 20)
[34:21:41 -42368.952184] SLOW spr round 48 (radius: 5)
[34:23:04 -42368.784235] SLOW spr round 49 (radius: 5)
[34:24:26 -42368.268468] SLOW spr round 50 (radius: 5)
[34:25:41 -42368.268070] SLOW spr round 51 (radius: 10)
[34:26:57 -42365.423435] SLOW spr round 52 (radius: 5)
[34:28:22 -42362.913531] SLOW spr round 53 (radius: 5)
[34:29:40 -42362.371543] SLOW spr round 54 (radius: 5)
[34:30:53 -42362.371490] SLOW spr round 55 (radius: 10)
[34:32:07 -42362.371486] SLOW spr round 56 (radius: 15)
[34:34:12 -42362.345657] SLOW spr round 57 (radius: 20)
[34:36:34 -42360.080392] SLOW spr round 58 (radius: 5)
[34:38:02 -42359.759030] SLOW spr round 59 (radius: 5)
[34:39:22 -42359.737156] SLOW spr round 60 (radius: 10)
[34:40:39 -42359.737107] SLOW spr round 61 (radius: 15)
[34:42:42 -42358.413329] SLOW spr round 62 (radius: 5)
[34:44:10 -42357.370989] SLOW spr round 63 (radius: 5)
[34:45:31 -42357.177354] SLOW spr round 64 (radius: 5)
[34:46:46 -42357.176776] SLOW spr round 65 (radius: 10)
[34:48:02 -42357.176635] SLOW spr round 66 (radius: 15)
[34:50:03 -42356.564461] SLOW spr round 67 (radius: 5)
[34:51:25 -42356.235656] SLOW spr round 68 (radius: 5)
[34:52:39 -42356.235310] SLOW spr round 69 (radius: 10)
[34:53:51 -42356.235211] SLOW spr round 70 (radius: 15)
[34:55:50 -42356.235180] SLOW spr round 71 (radius: 20)
[34:58:30 -42354.959273] SLOW spr round 72 (radius: 5)
[35:00:07 -42354.959109] SLOW spr round 73 (radius: 10)
[35:01:30 -42354.959074] SLOW spr round 74 (radius: 15)
[35:03:23 -42354.959064] SLOW spr round 75 (radius: 20)
[35:05:38 -42353.508132] SLOW spr round 76 (radius: 5)
[35:07:02 -42353.023473] SLOW spr round 77 (radius: 5)
[35:08:17 -42353.022820] SLOW spr round 78 (radius: 10)
[35:09:30 -42352.390946] SLOW spr round 79 (radius: 5)
[35:10:49 -42352.390359] SLOW spr round 80 (radius: 10)
[35:12:06 -42352.390279] SLOW spr round 81 (radius: 15)
[35:14:01 -42351.730865] SLOW spr round 82 (radius: 5)
[35:15:21 -42351.728861] SLOW spr round 83 (radius: 10)
[35:16:41 -42351.728327] SLOW spr round 84 (radius: 15)
[35:18:34 -42351.728191] SLOW spr round 85 (radius: 20)
[35:20:51 -42351.484585] SLOW spr round 86 (radius: 5)
[35:22:14 -42351.414389] SLOW spr round 87 (radius: 10)
[35:23:37 -42351.414359] SLOW spr round 88 (radius: 15)
[35:25:29 -42351.414357] SLOW spr round 89 (radius: 20)
[35:27:45 -42351.180309] SLOW spr round 90 (radius: 5)
[35:29:08 -42351.178845] SLOW spr round 91 (radius: 10)
[35:30:30 -42351.178513] SLOW spr round 92 (radius: 15)
[35:32:22 -42351.178421] SLOW spr round 93 (radius: 20)
[35:34:37 -42351.178394] SLOW spr round 94 (radius: 25)
[35:37:00 -42351.086165] Model parameter optimization (eps = 0.100000)

[35:37:04] ML tree search #19, logLikelihood: -42351.057416

[35:37:04 -98735.585426] Initial branch length optimization
[35:37:05 -82763.685486] Model parameter optimization (eps = 10.000000)
[35:37:20 -82590.389439] AUTODETECT spr round 1 (radius: 5)
[35:38:22 -68867.387223] AUTODETECT spr round 2 (radius: 10)
[35:39:35 -56359.815225] AUTODETECT spr round 3 (radius: 15)
[35:40:54 -51173.979683] AUTODETECT spr round 4 (radius: 20)
[35:42:26 -48347.988021] AUTODETECT spr round 5 (radius: 25)
[35:43:56 -47658.757898] SPR radius for FAST iterations: 25 (autodetect)
[35:43:56 -47658.757898] Model parameter optimization (eps = 3.000000)
[35:44:07 -47492.446275] FAST spr round 1 (radius: 25)
[35:45:49 -42895.145949] FAST spr round 2 (radius: 25)
[35:47:10 -42558.372677] FAST spr round 3 (radius: 25)
[35:48:21 -42508.277275] FAST spr round 4 (radius: 25)
[35:49:25 -42474.327276] FAST spr round 5 (radius: 25)
[35:50:25 -42474.326903] Model parameter optimization (eps = 1.000000)
[35:50:31 -42470.603324] SLOW spr round 1 (radius: 5)
[35:51:43 -42458.261807] SLOW spr round 2 (radius: 5)
[35:52:53 -42455.495854] SLOW spr round 3 (radius: 5)
[35:53:59 -42455.494475] SLOW spr round 4 (radius: 10)
[35:55:08 -42452.445446] SLOW spr round 5 (radius: 5)
[35:56:27 -42450.450316] SLOW spr round 6 (radius: 5)
[35:57:39 -42450.449931] SLOW spr round 7 (radius: 10)
[35:58:49 -42450.061506] SLOW spr round 8 (radius: 5)
[36:00:05 -42450.034341] SLOW spr round 9 (radius: 10)
[36:01:20 -42449.517410] SLOW spr round 10 (radius: 5)
[36:02:36 -42448.988142] SLOW spr round 11 (radius: 5)
[36:03:46 -42448.988008] SLOW spr round 12 (radius: 10)
[36:04:56 -42448.987894] SLOW spr round 13 (radius: 15)
[36:06:44 -42444.976976] SLOW spr round 14 (radius: 5)
[36:08:03 -42444.975423] SLOW spr round 15 (radius: 10)
[36:09:21 -42443.753839] SLOW spr round 16 (radius: 5)
[36:10:39 -42443.434346] SLOW spr round 17 (radius: 5)
[36:11:50 -42443.432661] SLOW spr round 18 (radius: 10)
[36:13:00 -42443.250384] SLOW spr round 19 (radius: 5)
[36:14:16 -42443.250219] SLOW spr round 20 (radius: 10)
[36:15:31 -42443.250077] SLOW spr round 21 (radius: 15)
[36:17:13 -42442.393829] SLOW spr round 22 (radius: 5)
[36:18:32 -42440.877849] SLOW spr round 23 (radius: 5)
[36:19:44 -42440.877356] SLOW spr round 24 (radius: 10)
[36:20:55 -42440.877226] SLOW spr round 25 (radius: 15)
[36:22:39 -42440.096602] SLOW spr round 26 (radius: 5)
[36:23:58 -42439.009637] SLOW spr round 27 (radius: 5)
[36:25:11 -42439.009582] SLOW spr round 28 (radius: 10)
[36:26:23 -42437.304683] SLOW spr round 29 (radius: 5)
[36:27:39 -42437.304624] SLOW spr round 30 (radius: 10)
[36:28:54 -42437.304624] SLOW spr round 31 (radius: 15)
[36:30:36 -42436.675401] SLOW spr round 32 (radius: 5)
[36:31:55 -42436.675238] SLOW spr round 33 (radius: 10)
[36:33:12 -42436.675237] SLOW spr round 34 (radius: 15)
[36:34:53 -42436.675237] SLOW spr round 35 (radius: 20)
[36:36:54 -42429.766564] SLOW spr round 36 (radius: 5)
[36:38:15 -42429.004058] SLOW spr round 37 (radius: 5)
[36:39:28 -42429.004034] SLOW spr round 38 (radius: 10)
[36:40:39 -42428.744204] SLOW spr round 39 (radius: 5)
[36:41:56 -42428.741708] SLOW spr round 40 (radius: 10)
[36:43:11 -42428.741595] SLOW spr round 41 (radius: 15)
[36:44:54 -42428.741588] SLOW spr round 42 (radius: 20)
[36:46:54 -42427.786870] SLOW spr round 43 (radius: 5)
[36:48:15 -42427.635558] SLOW spr round 44 (radius: 5)
[36:49:29 -42427.632520] SLOW spr round 45 (radius: 10)
[36:50:42 -42422.568716] SLOW spr round 46 (radius: 5)
[36:52:00 -42417.787289] SLOW spr round 47 (radius: 5)
[36:53:12 -42417.725424] SLOW spr round 48 (radius: 10)
[36:54:22 -42417.694321] SLOW spr round 49 (radius: 15)
[36:56:08 -42417.674483] SLOW spr round 50 (radius: 20)
[36:58:07 -42417.674468] SLOW spr round 51 (radius: 25)
[37:00:12 -42417.524982] SLOW spr round 52 (radius: 5)
[37:01:35 -42417.027371] SLOW spr round 53 (radius: 5)
[37:02:48 -42417.026734] SLOW spr round 54 (radius: 10)
[37:03:59 -42416.979728] SLOW spr round 55 (radius: 15)
[37:05:44 -42415.741198] SLOW spr round 56 (radius: 5)
[37:07:03 -42413.711617] SLOW spr round 57 (radius: 5)
[37:08:15 -42413.711117] SLOW spr round 58 (radius: 10)
[37:09:26 -42413.165238] SLOW spr round 59 (radius: 5)
[37:10:42 -42412.988896] SLOW spr round 60 (radius: 5)
[37:11:54 -42412.806960] SLOW spr round 61 (radius: 5)
[37:13:02 -42412.806707] SLOW spr round 62 (radius: 10)
[37:14:10 -42412.806695] SLOW spr round 63 (radius: 15)
[37:15:59 -42412.806694] SLOW spr round 64 (radius: 20)
[37:17:57 -42412.603878] SLOW spr round 65 (radius: 5)
[37:19:17 -42412.321670] SLOW spr round 66 (radius: 5)
[37:20:30 -42412.321554] SLOW spr round 67 (radius: 10)
[37:21:42 -42412.321549] SLOW spr round 68 (radius: 15)
[37:23:27 -42412.321548] SLOW spr round 69 (radius: 20)
[37:25:25 -42412.321548] SLOW spr round 70 (radius: 25)
[37:27:29 -42412.321548] Model parameter optimization (eps = 0.100000)

[37:27:34] ML tree search #20, logLikelihood: -42411.725738


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.203438,0.384746) (0.254230,0.490229) (0.305045,1.235790) (0.237287,1.770538) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -42225.878630

AIC score: 88165.757261 / AICc score: 6988777.757261 / BIC score: 92023.744294
Free parameters (model + branch lengths): 1857

WARNING: Number of free parameters (K=1857) is larger than alignment size (n=59).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 193 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A2A2Z9/3_mltree/A2A2Z9.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A2A2Z9/3_mltree/A2A2Z9.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A2A2Z9/3_mltree/A2A2Z9.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A2A2Z9/3_mltree/A2A2Z9.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A2A2Z9/3_mltree/A2A2Z9.raxml.log

Analysis started: 06-Jul-2021 03:20:14 / finished: 07-Jul-2021 16:47:50

Elapsed time: 134855.099 seconds

Consumed energy: 10643.635 Wh (= 53 km in an electric car, or 266 km with an e-scooter!)