RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jul-2021 20:52:10 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A0AV02/2_msa/A0AV02_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A0AV02/3_mltree/A0AV02 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A0AV02/2_msa/A0AV02_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 268 sites WARNING: Sequences tr_B4QR94_B4QR94_DROSI_7240 and tr_M9PI37_M9PI37_DROME_7227 are exactly identical! WARNING: Sequences tr_A0A1D5PMQ8_A0A1D5PMQ8_CHICK_9031 and tr_G1MYH0_G1MYH0_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PMQ8_A0A1D5PMQ8_CHICK_9031 and tr_U3I909_U3I909_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PMQ8_A0A1D5PMQ8_CHICK_9031 and tr_A0A0Q3ME41_A0A0Q3ME41_AMAAE_12930 are exactly identical! WARNING: Sequences tr_E1BTK6_E1BTK6_CHICK_9031 and tr_G1N4Z7_G1N4Z7_MELGA_9103 are exactly identical! WARNING: Sequences sp_P55012_S12A2_MOUSE_10090 and tr_F1P9W5_F1P9W5_CANLF_9615 are exactly identical! WARNING: Sequences sp_P55012_S12A2_MOUSE_10090 and tr_I3M1X8_I3M1X8_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P55012_S12A2_MOUSE_10090 and tr_G1LF65_G1LF65_AILME_9646 are exactly identical! WARNING: Sequences sp_P55012_S12A2_MOUSE_10090 and tr_A0A2I2UVN9_A0A2I2UVN9_FELCA_9685 are exactly identical! WARNING: Sequences sp_P55012_S12A2_MOUSE_10090 and tr_A0A2U3WV45_A0A2U3WV45_ODORO_9708 are exactly identical! WARNING: Sequences sp_P55012_S12A2_MOUSE_10090 and tr_A0A2Y9IKU8_A0A2Y9IKU8_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P55012_S12A2_MOUSE_10090 and tr_A0A2Y9PBX1_A0A2Y9PBX1_DELLE_9749 are exactly identical! WARNING: Sequences sp_P55012_S12A2_MOUSE_10090 and tr_A0A2Y9EIB9_A0A2Y9EIB9_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P55012_S12A2_MOUSE_10090 and tr_A0A384CR13_A0A384CR13_URSMA_29073 are exactly identical! WARNING: Sequences sp_P55012_S12A2_MOUSE_10090 and tr_A0A384AMU4_A0A384AMU4_BALAS_310752 are exactly identical! WARNING: Sequences sp_P55014_S12A1_MOUSE_10090 and tr_G3HRT6_G3HRT6_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P55014_S12A1_MOUSE_10090 and tr_A0A3Q0CN17_A0A3Q0CN17_MESAU_10036 are exactly identical! WARNING: Sequences tr_Q6P6P5_Q6P6P5_MOUSE_10090 and sp_Q924N4_S12A6_MOUSE_10090 are exactly identical! WARNING: Sequences tr_Q6P6P5_Q6P6P5_MOUSE_10090 and tr_A0A2I3HZ52_A0A2I3HZ52_NOMLE_61853 are exactly identical! WARNING: Sequences tr_Q6P6P5_Q6P6P5_MOUSE_10090 and tr_A0A2I2Z741_A0A2I2Z741_GORGO_9595 are exactly identical! WARNING: Sequences tr_Q6P6P5_Q6P6P5_MOUSE_10090 and tr_H2NMQ6_H2NMQ6_PONAB_9601 are exactly identical! WARNING: Sequences tr_Q6P6P5_Q6P6P5_MOUSE_10090 and tr_A0A2I3SQ36_A0A2I3SQ36_PANTR_9598 are exactly identical! WARNING: Sequences tr_Q6P6P5_Q6P6P5_MOUSE_10090 and tr_G3V6N7_G3V6N7_RAT_10116 are exactly identical! WARNING: Sequences tr_Q6P6P5_Q6P6P5_MOUSE_10090 and tr_H0WT14_H0WT14_OTOGA_30611 are exactly identical! WARNING: Sequences tr_Q6P6P5_Q6P6P5_MOUSE_10090 and tr_H0VB79_H0VB79_CAVPO_10141 are exactly identical! WARNING: Sequences tr_Q6P6P5_Q6P6P5_MOUSE_10090 and sp_Q9UHW9_S12A6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q6P6P5_Q6P6P5_MOUSE_10090 and tr_A0A1S3F222_A0A1S3F222_DIPOR_10020 are exactly identical! WARNING: Sequences tr_Q6P6P5_Q6P6P5_MOUSE_10090 and tr_A0A1U7U4D2_A0A1U7U4D2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_C7F7M1_C7F7M1_MUSPF_9669 and tr_G1L5A2_G1L5A2_AILME_9646 are exactly identical! WARNING: Sequences tr_C7F7M1_C7F7M1_MUSPF_9669 and tr_A0A2Y9L8K0_A0A2Y9L8K0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_C7F7M1_C7F7M1_MUSPF_9669 and tr_A0A384DAT4_A0A384DAT4_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XYJ0_M3XYJ0_MUSPF_9669 and tr_A0A2Y9KCP8_A0A2Y9KCP8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y9D9_M3Y9D9_MUSPF_9669 and tr_W5QF60_W5QF60_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Y9D9_M3Y9D9_MUSPF_9669 and tr_F2Z5K1_F2Z5K1_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y9D9_M3Y9D9_MUSPF_9669 and tr_G1MBI3_G1MBI3_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y9D9_M3Y9D9_MUSPF_9669 and tr_F1N2X1_F1N2X1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y9D9_M3Y9D9_MUSPF_9669 and tr_A0A2I2UF14_A0A2I2UF14_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y9D9_M3Y9D9_MUSPF_9669 and tr_A0A2U3XGU3_A0A2U3XGU3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y9D9_M3Y9D9_MUSPF_9669 and tr_A0A2Y9KY32_A0A2Y9KY32_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y9D9_M3Y9D9_MUSPF_9669 and tr_A0A2Y9FNV2_A0A2Y9FNV2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Y9D9_M3Y9D9_MUSPF_9669 and tr_A0A384D177_A0A384D177_URSMA_29073 are exactly identical! WARNING: Sequences tr_G3HIG7_G3HIG7_CRIGR_10029 and tr_A0A1U8CAR5_A0A1U8CAR5_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3QGM4_G3QGM4_GORGO_9595 and tr_H2R4F1_H2R4F1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QGM4_G3QGM4_GORGO_9595 and sp_Q9BXP2_S12A9_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QGM4_G3QGM4_GORGO_9595 and tr_A0A2R9CKR1_A0A2R9CKR1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QRX2_G3QRX2_GORGO_9595 and tr_H2RD01_H2RD01_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2NN60_H2NN60_PONAB_9601 and sp_Q13621_S12A1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NN60_H2NN60_PONAB_9601 and tr_G7PV97_G7PV97_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2NN60_H2NN60_PONAB_9601 and tr_A0A0D9RDB4_A0A0D9RDB4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2NN60_H2NN60_PONAB_9601 and tr_A0A2K5NLQ3_A0A2K5NLQ3_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2NN60_H2NN60_PONAB_9601 and tr_A0A2K5YAV4_A0A2K5YAV4_MANLE_9568 are exactly identical! WARNING: Sequences tr_H2NN60_H2NN60_PONAB_9601 and tr_A0A2R8Z779_A0A2R8Z779_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0R3P3H9_A0A0R3P3H9_DROPS_46245 and tr_B4GRD7_B4GRD7_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q29IZ4_Q29IZ4_DROPS_46245 and tr_B4GTM9_B4GTM9_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2RRI1_E2RRI1_CANLF_9615 and tr_A0A2I2UGY0_A0A2I2UGY0_FELCA_9685 are exactly identical! WARNING: Sequences tr_Q5KU49_Q5KU49_CANLF_9615 and tr_F6PN25_F6PN25_HORSE_9796 are exactly identical! WARNING: Sequences tr_Q5KU49_Q5KU49_CANLF_9615 and tr_W5NZ86_W5NZ86_SHEEP_9940 are exactly identical! WARNING: Sequences tr_Q5KU49_Q5KU49_CANLF_9615 and tr_H0VJU6_H0VJU6_CAVPO_10141 are exactly identical! WARNING: Sequences tr_Q5KU49_Q5KU49_CANLF_9615 and tr_G1MH07_G1MH07_AILME_9646 are exactly identical! WARNING: Sequences tr_Q5KU49_Q5KU49_CANLF_9615 and tr_A0A2I2UHF3_A0A2I2UHF3_FELCA_9685 are exactly identical! WARNING: Sequences tr_Q5KU49_Q5KU49_CANLF_9615 and tr_A0A2U3ZQC0_A0A2U3ZQC0_ODORO_9708 are exactly identical! WARNING: Sequences tr_Q5KU49_Q5KU49_CANLF_9615 and tr_A0A2Y9K252_A0A2Y9K252_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q5KU49_Q5KU49_CANLF_9615 and tr_A0A2Y9ST10_A0A2Y9ST10_PHYCD_9755 are exactly identical! WARNING: Sequences tr_Q5KU49_Q5KU49_CANLF_9615 and tr_A0A384D0T1_A0A384D0T1_URSMA_29073 are exactly identical! WARNING: Sequences tr_H2QRF1_H2QRF1_PANTR_9598 and tr_A0A2R8ZXR2_A0A2R8ZXR2_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5Q867_W5Q867_SHEEP_9940 and tr_A0A287AEN4_A0A287AEN4_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A087ZPC6_A0A087ZPC6_APIME_7460 and tr_A0A2A3EI84_A0A2A3EI84_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158N9Y7_A0A158N9Y7_ATTCE_12957 and tr_A0A195BIX6_A0A195BIX6_9HYME_520822 are exactly identical! WARNING: Sequences sp_P55011_S12A2_HUMAN_9606 and tr_H9FYQ0_H9FYQ0_MACMU_9544 are exactly identical! WARNING: Sequences sp_P55011_S12A2_HUMAN_9606 and tr_G7P864_G7P864_MACFA_9541 are exactly identical! WARNING: Sequences sp_P55011_S12A2_HUMAN_9606 and tr_A0A0D9RPL1_A0A0D9RPL1_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P55011_S12A2_HUMAN_9606 and tr_A0A2K5L5J1_A0A2K5L5J1_CERAT_9531 are exactly identical! WARNING: Sequences sp_P55011_S12A2_HUMAN_9606 and tr_A0A2K6BHT7_A0A2K6BHT7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A158PYX2_A0A158PYX2_BRUMA_6279 and tr_A0A0R3QNV2_A0A0R3QNV2_9BILA_42155 are exactly identical! WARNING: Sequences tr_F6QQS8_F6QQS8_MACMU_9544 and tr_G7Q167_G7Q167_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6QQS8_F6QQS8_MACMU_9544 and tr_A0A2K6E315_A0A2K6E315_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6RH99_F6RH99_MACMU_9544 and tr_G7NYE6_G7NYE6_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6RH99_F6RH99_MACMU_9544 and tr_A0A2I3MJ08_A0A2I3MJ08_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6RH99_F6RH99_MACMU_9544 and tr_A0A2K5NJK4_A0A2K5NJK4_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6RH99_F6RH99_MACMU_9544 and tr_A0A2K5Y2R8_A0A2K5Y2R8_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7H2L4_F7H2L4_MACMU_9544 and tr_G7PAP2_G7PAP2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H2L4_F7H2L4_MACMU_9544 and tr_A0A096NTA1_A0A096NTA1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7H2L4_F7H2L4_MACMU_9544 and tr_A0A0D9R431_A0A0D9R431_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7H2L4_F7H2L4_MACMU_9544 and tr_A0A2K5MS19_A0A2K5MS19_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7H2L4_F7H2L4_MACMU_9544 and tr_A0A2K6BU07_A0A2K6BU07_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H2L4_F7H2L4_MACMU_9544 and tr_A0A2K6AAQ5_A0A2K6AAQ5_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HPK4_F7HPK4_MACMU_9544 and tr_A0A0D9RZG9_A0A0D9RZG9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HPK4_F7HPK4_MACMU_9544 and tr_A0A2K5MBC3_A0A2K5MBC3_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HPK4_F7HPK4_MACMU_9544 and tr_A0A2K6CKA7_A0A2K6CKA7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HPK4_F7HPK4_MACMU_9544 and tr_A0A2K5ZR00_A0A2K5ZR00_MANLE_9568 are exactly identical! WARNING: Sequences tr_B8A6Q9_B8A6Q9_ORYSI_39946 and sp_Q657W3_CCC2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_H0Z8B6_H0Z8B6_TAEGU_59729 and tr_A0A218V0U9_A0A218V0U9_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZA22_H0ZA22_TAEGU_59729 and tr_U3JZA0_U3JZA0_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZA22_H0ZA22_TAEGU_59729 and tr_A0A218UYT7_A0A218UYT7_9PASE_299123 are exactly identical! WARNING: Sequences tr_B3S137_B3S137_TRIAD_10228 and tr_A0A369SLZ5_A0A369SLZ5_9METZ_287889 are exactly identical! WARNING: Sequences tr_M4D2R7_M4D2R7_BRARP_51351 and tr_A0A078FFP9_A0A078FFP9_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4D2R7_M4D2R7_BRARP_51351 and tr_A0A0D3BJ47_A0A0D3BJ47_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A044U4I5_A0A044U4I5_ONCVO_6282 and tr_A0A182E5F4_A0A182E5F4_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A096NIM8_A0A096NIM8_PAPAN_9555 and tr_A0A0D9QY58_A0A0D9QY58_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096NIM8_A0A096NIM8_PAPAN_9555 and tr_A0A2K5KMH5_A0A2K5KMH5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A090LML5_A0A090LML5_STRRB_34506 and tr_A0A090MZR8_A0A090MZR8_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A151M7Z8_A0A151M7Z8_ALLMI_8496 and tr_A0A3Q0G963_A0A3Q0G963_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091F1L9_A0A091F1L9_CORBR_85066 and tr_A0A093RYQ8_A0A093RYQ8_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091VEQ8_A0A091VEQ8_NIPNI_128390 and tr_A0A091WGD7_A0A091WGD7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A2I0LGZ1_A0A2I0LGZ1_COLLI_8932 and tr_A0A1V4KMD8_A0A1V4KMD8_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0M0H4_A0A2I0M0H4_COLLI_8932 and tr_A0A1V4K175_A0A1V4K175_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0M696_A0A2I0M696_COLLI_8932 and tr_A0A1V4IQ68_A0A1V4IQ68_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0M7Z7_A0A2I0M7Z7_COLLI_8932 and tr_A0A1V4K0G3_A0A1V4K0G3_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0RLS9_A0A0V0RLS9_9BILA_6336 and tr_A0A0V0X8D9_A0A0V0X8D9_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RSZ1_A0A0V0RSZ1_9BILA_6336 and tr_A0A0V1CJK6_A0A0V1CJK6_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RSZ1_A0A0V0RSZ1_9BILA_6336 and tr_A0A0V0WCF5_A0A0V0WCF5_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RSZ1_A0A0V0RSZ1_9BILA_6336 and tr_A0A0V0VIQ5_A0A0V0VIQ5_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RSZ1_A0A0V0RSZ1_9BILA_6336 and tr_A0A0V1LFR6_A0A0V1LFR6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RSZ1_A0A0V0RSZ1_9BILA_6336 and tr_A0A0V0ZY90_A0A0V0ZY90_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RSZ1_A0A0V0RSZ1_9BILA_6336 and tr_A0A0V1NR67_A0A0V1NR67_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RSZ1_A0A0V0RSZ1_9BILA_6336 and tr_A0A0V0TLL7_A0A0V0TLL7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0S9P2_A0A0V0S9P2_9BILA_6336 and tr_A0A0V0WR50_A0A0V0WR50_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S9P2_A0A0V0S9P2_9BILA_6336 and tr_A0A0V1LD68_A0A0V1LD68_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S9P2_A0A0V0S9P2_9BILA_6336 and tr_A0A0V0ZFU2_A0A0V0ZFU2_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0S9P2_A0A0V0S9P2_9BILA_6336 and tr_A0A0V1H096_A0A0V1H096_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V0S9P2_A0A0V0S9P2_9BILA_6336 and tr_A0A0V0U5V0_A0A0V0U5V0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0S9X7_A0A0V0S9X7_9BILA_6336 and tr_A0A0V1D9H1_A0A0V1D9H1_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S9X7_A0A0V0S9X7_9BILA_6336 and tr_A0A0V0V4E5_A0A0V0V4E5_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0S9X7_A0A0V0S9X7_9BILA_6336 and tr_A0A0V1LDB1_A0A0V1LDB1_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S9X7_A0A0V0S9X7_9BILA_6336 and tr_A0A0V0ZFR6_A0A0V0ZFR6_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0S9X7_A0A0V0S9X7_9BILA_6336 and tr_A0A0V1P412_A0A0V1P412_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S9X7_A0A0V0S9X7_9BILA_6336 and tr_A0A0V0U5C7_A0A0V0U5C7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0SHH6_A0A0V0SHH6_9BILA_6336 and tr_A0A0V1DIS9_A0A0V1DIS9_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0SHH6_A0A0V0SHH6_9BILA_6336 and tr_A0A0V0X583_A0A0V0X583_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0SHH6_A0A0V0SHH6_9BILA_6336 and tr_A0A0V0W0C3_A0A0V0W0C3_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0SHH6_A0A0V0SHH6_9BILA_6336 and tr_A0A0V1LVN1_A0A0V1LVN1_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0SHH6_A0A0V0SHH6_9BILA_6336 and tr_A0A0V1ADZ7_A0A0V1ADZ7_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0SHH6_A0A0V0SHH6_9BILA_6336 and tr_A0A0V1PPB0_A0A0V1PPB0_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0SHH6_A0A0V0SHH6_9BILA_6336 and tr_A0A0V0UDQ5_A0A0V0UDQ5_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1D4C3_A0A0V1D4C3_TRIBR_45882 and tr_A0A0V1KSM6_A0A0V1KSM6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1D548_A0A0V1D548_TRIBR_45882 and tr_A0A0V0XCB4_A0A0V0XCB4_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1D548_A0A0V1D548_TRIBR_45882 and tr_A0A0V1LH55_A0A0V1LH55_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1D548_A0A0V1D548_TRIBR_45882 and tr_A0A0V1NXL1_A0A0V1NXL1_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1D548_A0A0V1D548_TRIBR_45882 and tr_A0A0V0UC88_A0A0V0UC88_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1DIF8_A0A0V1DIF8_TRIBR_45882 and tr_A0A0V1LSV8_A0A0V1LSV8_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1DIF8_A0A0V1DIF8_TRIBR_45882 and tr_A0A0V1A2K3_A0A0V1A2K3_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1DIF8_A0A0V1DIF8_TRIBR_45882 and tr_A0A0V1NQ58_A0A0V1NQ58_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0UZJ3_A0A0V0UZJ3_9BILA_181606 and tr_A0A0V0TCW5_A0A0V0TCW5_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1JRI4_A0A0V1JRI4_TRIPS_6337 and tr_A0A0V1H0Z6_A0A0V1H0Z6_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V1MEV3_A0A0V1MEV3_9BILA_268474 and tr_A0A0V1HBK0_A0A0V1HBK0_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V1MN67_A0A0V1MN67_9BILA_268474 and tr_A0A0V1GZ64_A0A0V1GZ64_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V1N971_A0A0V1N971_9BILA_268474 and tr_A0A0V1HKC8_A0A0V1HKC8_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3LHE0_A0A1S3LHE0_SALSA_8030 and tr_A0A1S3MCR2_A0A1S3MCR2_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3LYP4_A0A1S3LYP4_SALSA_8030 and tr_A0A060XCJ3_A0A060XCJ3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3M6F8_A0A1S3M6F8_SALSA_8030 and tr_A9NJG3_A9NJG3_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3M6F8_A0A1S3M6F8_SALSA_8030 and tr_A0A060WB78_A0A060WB78_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3N9C8_A0A1S3N9C8_SALSA_8030 and tr_A0A060Y311_A0A060Y311_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PT25_A0A1S3PT25_SALSA_8030 and tr_A0A060XUT0_A0A060XUT0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3QAZ9_A0A1S3QAZ9_SALSA_8030 and tr_A0A060WS36_A0A060WS36_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1J6KYJ9_A0A1J6KYJ9_NICAT_49451 and tr_A0A1U7VMC9_A0A1U7VMC9_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A226MG05_A0A226MG05_CALSU_9009 and tr_A0A226P2Y6_A0A226P2Y6_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226N3M3_A0A226N3M3_CALSU_9009 and tr_A0A226PQY3_A0A226PQY3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NHK7_A0A226NHK7_CALSU_9009 and tr_A0A226P8D7_A0A226P8D7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0QEC8_A0A2D0QEC8_ICTPU_7998 and tr_A0A2D0QED3_A0A2D0QED3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0R571_A0A2D0R571_ICTPU_7998 and tr_W5UJR2_W5UJR2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RVX0_A0A2D0RVX0_ICTPU_7998 and tr_A0A2D0RVX7_A0A2D0RVX7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RVX0_A0A2D0RVX0_ICTPU_7998 and tr_A0A2D0RVZ5_A0A2D0RVZ5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RVX0_A0A2D0RVX0_ICTPU_7998 and tr_A0A2D0RWS3_A0A2D0RWS3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SQF5_A0A2D0SQF5_ICTPU_7998 and tr_A0A2D0SQF9_A0A2D0SQF9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SQF5_A0A2D0SQF5_ICTPU_7998 and tr_A0A2D0SQG3_A0A2D0SQG3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SQF5_A0A2D0SQF5_ICTPU_7998 and tr_A0A2D0SRK9_A0A2D0SRK9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4AUL5_A0A2U4AUL5_TURTR_9739 and tr_A0A2Y9PJN1_A0A2Y9PJN1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BC39_A0A2U4BC39_TURTR_9739 and tr_A0A2Y9P8A2_A0A2Y9P8A2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4C6M9_A0A2U4C6M9_TURTR_9739 and tr_A0A2Y9P9L5_A0A2Y9P9L5_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 169 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A0AV02/3_mltree/A0AV02.raxml.reduced.phy Alignment comprises 1 partitions and 268 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 268 / 268 Gaps: 2.99 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A0AV02/3_mltree/A0AV02.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 268 / 21440 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -468065.068132] Initial branch length optimization [00:00:05 -378610.477162] Model parameter optimization (eps = 10.000000) [00:01:21 -376265.279419] AUTODETECT spr round 1 (radius: 5) [00:04:38 -243085.187399] AUTODETECT spr round 2 (radius: 10) [00:08:15 -169614.689258] AUTODETECT spr round 3 (radius: 15) [00:12:50 -132186.159847] AUTODETECT spr round 4 (radius: 20) [00:17:27 -108245.405107] AUTODETECT spr round 5 (radius: 25) [00:21:34 -104491.031528] SPR radius for FAST iterations: 25 (autodetect) [00:21:34 -104491.031528] Model parameter optimization (eps = 3.000000) [00:22:08 -104393.402604] FAST spr round 1 (radius: 25) [00:25:28 -86748.630499] FAST spr round 2 (radius: 25) [00:27:57 -85547.525863] FAST spr round 3 (radius: 25) [00:30:11 -85487.787314] FAST spr round 4 (radius: 25) [00:32:08 -85481.492372] FAST spr round 5 (radius: 25) [00:33:59 -85481.492247] Model parameter optimization (eps = 1.000000) [00:34:28 -85442.088966] SLOW spr round 1 (radius: 5) [00:37:00 -85410.320671] SLOW spr round 2 (radius: 5) [00:39:30 -85406.747685] SLOW spr round 3 (radius: 5) [00:41:57 -85400.171897] SLOW spr round 4 (radius: 5) [00:44:23 -85399.458580] SLOW spr round 5 (radius: 5) [00:46:46 -85399.255457] SLOW spr round 6 (radius: 5) [00:49:07 -85399.255418] SLOW spr round 7 (radius: 10) [00:51:38 -85399.255412] SLOW spr round 8 (radius: 15) [00:55:43 -85396.400499] SLOW spr round 9 (radius: 5) [00:59:05 -85396.400369] SLOW spr round 10 (radius: 10) [01:02:04 -85396.400367] SLOW spr round 11 (radius: 15) [01:05:52 -85396.343251] SLOW spr round 12 (radius: 20) [01:07:55] [worker #3] ML tree search #4, logLikelihood: -85427.947141 [01:12:35 -85396.343251] SLOW spr round 13 (radius: 25) [01:20:06 -85396.343251] Model parameter optimization (eps = 0.100000) [01:20:24] [worker #0] ML tree search #1, logLikelihood: -85394.470354 [01:20:24 -466785.724549] Initial branch length optimization [01:20:30 -376395.082291] Model parameter optimization (eps = 10.000000) [01:21:26 -373703.726734] AUTODETECT spr round 1 (radius: 5) [01:21:31] [worker #1] ML tree search #2, logLikelihood: -85403.431154 [01:24:48 -239318.902270] AUTODETECT spr round 2 (radius: 10) [01:25:08] [worker #4] ML tree search #5, logLikelihood: -85394.613469 [01:28:24 -175520.651071] AUTODETECT spr round 3 (radius: 15) [01:32:48 -140231.021072] AUTODETECT spr round 4 (radius: 20) [01:37:02 -123398.696053] AUTODETECT spr round 5 (radius: 25) [01:41:36 -109443.631422] SPR radius for FAST iterations: 25 (autodetect) [01:41:36 -109443.631422] Model parameter optimization (eps = 3.000000) [01:42:16 -109229.438424] FAST spr round 1 (radius: 25) [01:45:33 -87193.496414] FAST spr round 2 (radius: 25) [01:48:04 -85552.223161] FAST spr round 3 (radius: 25) [01:50:22 -85398.623576] FAST spr round 4 (radius: 25) [01:52:20 -85388.198711] FAST spr round 5 (radius: 25) [01:54:11 -85388.197668] Model parameter optimization (eps = 1.000000) [01:54:26 -85381.216819] SLOW spr round 1 (radius: 5) [01:57:01 -85356.706200] SLOW spr round 2 (radius: 5) [01:59:31 -85354.563977] SLOW spr round 3 (radius: 5) [02:01:59 -85354.563892] SLOW spr round 4 (radius: 10) [02:02:52] [worker #2] ML tree search #3, logLikelihood: -85364.061244 [02:04:35 -85352.774061] SLOW spr round 5 (radius: 5) [02:07:49 -85352.773872] SLOW spr round 6 (radius: 10) [02:10:40 -85352.773869] SLOW spr round 7 (radius: 15) [02:14:29 -85352.487551] SLOW spr round 8 (radius: 5) [02:17:52 -85352.487366] SLOW spr round 9 (radius: 10) [02:19:45] [worker #3] ML tree search #9, logLikelihood: -85362.858438 [02:20:51 -85352.487364] SLOW spr round 10 (radius: 15) [02:24:39 -85352.411114] SLOW spr round 11 (radius: 20) [02:30:56 -85352.411114] SLOW spr round 12 (radius: 25) [02:38:05 -85352.411114] Model parameter optimization (eps = 0.100000) [02:38:11] [worker #0] ML tree search #6, logLikelihood: -85352.381081 [02:38:12 -468794.255409] Initial branch length optimization [02:38:17 -380155.169394] Model parameter optimization (eps = 10.000000) [02:39:17 -377648.892855] AUTODETECT spr round 1 (radius: 5) [02:42:35 -240107.716505] AUTODETECT spr round 2 (radius: 10) [02:46:10 -167971.887133] AUTODETECT spr round 3 (radius: 15) [02:48:33] [worker #4] ML tree search #10, logLikelihood: -85404.610543 [02:50:32 -128478.143713] AUTODETECT spr round 4 (radius: 20) [02:54:59 -109059.840170] AUTODETECT spr round 5 (radius: 25) [02:59:22 -103902.767076] SPR radius for FAST iterations: 25 (autodetect) [02:59:22 -103902.767076] Model parameter optimization (eps = 3.000000) [03:00:02 -103812.868724] FAST spr round 1 (radius: 25) [03:03:15 -86632.447821] FAST spr round 2 (radius: 25) [03:05:40 -85612.892374] FAST spr round 3 (radius: 25) [03:07:48 -85512.852215] FAST spr round 4 (radius: 25) [03:09:44 -85506.454405] FAST spr round 5 (radius: 25) [03:11:34 -85506.452941] Model parameter optimization (eps = 1.000000) [03:11:56 -85472.714971] SLOW spr round 1 (radius: 5) [03:14:26 -85441.822913] SLOW spr round 2 (radius: 5) [03:16:56 -85439.349059] SLOW spr round 3 (radius: 5) [03:19:26 -85439.348592] SLOW spr round 4 (radius: 10) [03:20:07] [worker #1] ML tree search #7, logLikelihood: -85393.928738 [03:22:08 -85434.531176] SLOW spr round 5 (radius: 5) [03:25:24 -85434.530849] SLOW spr round 6 (radius: 10) [03:28:14 -85434.298345] SLOW spr round 7 (radius: 5) [03:31:19 -85434.298276] SLOW spr round 8 (radius: 10) [03:33:54] [worker #3] ML tree search #14, logLikelihood: -85387.318497 [03:34:05 -85434.298276] SLOW spr round 9 (radius: 15) [03:38:01 -85415.161888] SLOW spr round 10 (radius: 5) [03:41:26 -85408.268250] SLOW spr round 11 (radius: 5) [03:44:22 -85408.267998] SLOW spr round 12 (radius: 10) [03:47:08 -85407.221435] SLOW spr round 13 (radius: 5) [03:50:20 -85407.127701] SLOW spr round 14 (radius: 10) [03:52:25] [worker #2] ML tree search #8, logLikelihood: -85404.489476 [03:53:09 -85407.126683] SLOW spr round 15 (radius: 15) [03:57:01 -85407.069090] SLOW spr round 16 (radius: 20) [04:03:43 -85407.069089] SLOW spr round 17 (radius: 25) [04:11:45 -85407.069089] Model parameter optimization (eps = 0.100000) [04:12:03] [worker #0] ML tree search #11, logLikelihood: -85406.880453 [04:12:03 -470613.569293] Initial branch length optimization [04:12:08 -380231.800028] Model parameter optimization (eps = 10.000000) [04:13:06 -377544.922722] AUTODETECT spr round 1 (radius: 5) [04:13:36] [worker #4] ML tree search #15, logLikelihood: -85373.004998 [04:16:22 -242117.002044] AUTODETECT spr round 2 (radius: 10) [04:19:57 -166897.275355] AUTODETECT spr round 3 (radius: 15) [04:24:07 -134181.062872] AUTODETECT spr round 4 (radius: 20) [04:28:08 -122697.214707] AUTODETECT spr round 5 (radius: 25) [04:32:45 -115141.268755] SPR radius for FAST iterations: 25 (autodetect) [04:32:45 -115141.268755] Model parameter optimization (eps = 3.000000) [04:33:20 -115018.801950] FAST spr round 1 (radius: 25) [04:33:32] [worker #1] ML tree search #12, logLikelihood: -85353.839146 [04:36:41 -93089.147712] FAST spr round 2 (radius: 25) [04:38:59 -87540.815969] FAST spr round 3 (radius: 25) [04:41:10 -85897.486621] FAST spr round 4 (radius: 25) [04:43:17 -85540.936802] FAST spr round 5 (radius: 25) [04:45:13 -85528.624425] FAST spr round 6 (radius: 25) [04:47:02 -85527.903907] FAST spr round 7 (radius: 25) [04:48:50 -85527.903867] Model parameter optimization (eps = 1.000000) [04:49:13 -85432.700179] SLOW spr round 1 (radius: 5) [04:51:41 -85399.773736] SLOW spr round 2 (radius: 5) [04:54:10 -85388.219344] SLOW spr round 3 (radius: 5) [04:56:36 -85386.613463] SLOW spr round 4 (radius: 5) [04:56:51] [worker #3] ML tree search #19, logLikelihood: -85430.337850 [04:58:58 -85386.613258] SLOW spr round 5 (radius: 10) [05:01:30 -85382.270733] SLOW spr round 6 (radius: 5) [05:04:40 -85382.182472] SLOW spr round 7 (radius: 10) [05:07:31 -85382.182221] SLOW spr round 8 (radius: 15) [05:11:24 -85382.182221] SLOW spr round 9 (radius: 20) [05:18:17 -85375.173955] SLOW spr round 10 (radius: 5) [05:21:40 -85375.056445] SLOW spr round 11 (radius: 5) [05:24:32 -85375.056389] SLOW spr round 12 (radius: 10) [05:27:12 -85375.056381] SLOW spr round 13 (radius: 15) [05:31:03 -85375.056381] SLOW spr round 14 (radius: 20) [05:31:38] [worker #2] ML tree search #13, logLikelihood: -85388.681719 [05:37:33 -85375.056381] SLOW spr round 15 (radius: 25) [05:41:01] [worker #4] ML tree search #20, logLikelihood: -85380.411977 [05:42:40] [worker #1] ML tree search #17, logLikelihood: -85388.781441 [05:45:10 -85375.056381] Model parameter optimization (eps = 0.100000) [05:45:18] [worker #0] ML tree search #16, logLikelihood: -85375.019911 [06:33:56] [worker #2] ML tree search #18, logLikelihood: -85360.326178 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.359067,0.543832) (0.260099,1.417811) (0.324843,0.875061) (0.055991,2.709356) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -85352.381081 AIC score: 174714.762161 / AICc score: 8218774.762161 / BIC score: 181914.691057 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=268). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A0AV02/3_mltree/A0AV02.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A0AV02/3_mltree/A0AV02.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A0AV02/3_mltree/A0AV02.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/A0AV02/3_mltree/A0AV02.raxml.log Analysis started: 02-Jul-2021 20:52:10 / finished: 03-Jul-2021 03:26:07 Elapsed time: 23636.981 seconds Consumed energy: 1874.847 Wh (= 9 km in an electric car, or 47 km with an e-scooter!)