RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 30-Jun-2021 19:21:51 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A0C4DH69/2_msa/A0A0C4DH69_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A0C4DH69/3_mltree/A0A0C4DH69 --seed 2 --threads 2 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A0C4DH69/2_msa/A0A0C4DH69_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 94 sites

WARNING: Sequences tr_A0A075B5N8_A0A075B5N8_MOUSE_10090 and sp_P01661_KV3A9_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A075B5N8_A0A075B5N8_MOUSE_10090 and sp_P01662_KV3AA_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A075B5N8_A0A075B5N8_MOUSE_10090 and sp_P01663_KV3AB_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A140T8M6_A0A140T8M6_MOUSE_10090 and sp_P01660_KV3A8_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A140T8P0_A0A140T8P0_MOUSE_10090 and sp_P01670_KV3AI_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A140T8P0_A0A140T8P0_MOUSE_10090 and sp_P01671_KV3AJ_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A140T8P9_A0A140T8P9_MOUSE_10090 and sp_P01638_KV5A6_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A140T8Q4_A0A140T8Q4_MOUSE_10090 and sp_P01665_KV3AD_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A140T8Q4_A0A140T8Q4_MOUSE_10090 and sp_P01666_KV3AE_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A2I2YMS6_A0A2I2YMS6_GORGO_9595 and tr_A0A2R9AK91_A0A2R9AK91_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2YSS5_A0A2I2YSS5_GORGO_9595 and tr_A0A2I2YT27_A0A2I2YT27_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I3RYP8_A0A2I3RYP8_PANTR_9598 and tr_A0A2R9AL33_A0A2R9AL33_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3SY06_A0A2I3SY06_PANTR_9598 and tr_A0A2R9AMP3_A0A2R9AMP3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3TAX1_A0A2I3TAX1_PANTR_9598 and tr_A0A2R9AKE1_A0A2R9AKE1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2R7U4_H2R7U4_PANTR_9598 and tr_A0A2R8ZT75_A0A2R8ZT75_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2REY2_H2REY2_PANTR_9598 and sp_A0A075B6S5_KV127_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2RFE6_H2RFE6_PANTR_9598 and sp_A0A0C4DH55_KVD07_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2RFE6_H2RFE6_PANTR_9598 and tr_A0A0C4DH90_A0A0C4DH90_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A0G2JXF0_A0A0G2JXF0_RAT_10116 and tr_A0A0G2K3L5_A0A0G2K3L5_RAT_10116 are exactly identical!
WARNING: Sequences tr_F1LZK3_F1LZK3_RAT_10116 and tr_M0R7F5_M0R7F5_RAT_10116 are exactly identical!
WARNING: Sequences tr_H0WN68_H0WN68_OTOGA_30611 and tr_H0XNM8_H0XNM8_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_A0A075B6P5_KV228_HUMAN_9606 and sp_P01615_KVD28_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_A0A087WW87_KV240_HUMAN_9606 and sp_P01614_KVD40_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_A0A0B4J2D9_KVD13_HUMAN_9606 and sp_P0DP09_KV113_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_A0A0C4DH73_KV112_HUMAN_9606 and sp_P01611_KVD12_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P01593_KVD33_HUMAN_9606 and sp_P01594_KV133_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P01597_KV139_HUMAN_9606 and sp_P04432_KVD39_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A1D5QKT2_A0A1D5QKT2_MACMU_9544 and tr_A0A2K6AW30_A0A2K6AW30_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5QRB6_A0A1D5QRB6_MACMU_9544 and tr_G7PN21_G7PN21_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G7PN24_G7PN24_MACFA_9541 and tr_A0A096MV46_A0A096MV46_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G7PN24_G7PN24_MACFA_9541 and tr_A0A2K6ALT7_A0A2K6ALT7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I3LXZ6_A0A2I3LXZ6_PAPAN_9555 and tr_A0A0D9RVD0_A0A0D9RVD0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I3LZC8_A0A2I3LZC8_PAPAN_9555 and tr_A0A2K6B468_A0A2K6B468_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I3LZC8_A0A2I3LZC8_PAPAN_9555 and tr_A0A2K5XFL9_A0A2K5XFL9_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I3MR38_A0A2I3MR38_PAPAN_9555 and tr_A0A2K5ME55_A0A2K5ME55_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3N776_A0A2I3N776_PAPAN_9555 and tr_A0A2K5NT28_A0A2K5NT28_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3N776_A0A2I3N776_PAPAN_9555 and tr_A0A2K6ALR0_A0A2K6ALR0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I3NA91_A0A2I3NA91_PAPAN_9555 and tr_A0A2K5L3Y1_A0A2K5L3Y1_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2K5KNK7_A0A2K5KNK7_CERAT_9531 and tr_A0A2K6BZM9_A0A2K6BZM9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2K5L135_A0A2K5L135_CERAT_9531 and tr_A0A2K5XUU7_A0A2K5XUU7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2K5LXG6_A0A2K5LXG6_CERAT_9531 and tr_A0A2K5Z1U6_A0A2K5Z1U6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2K5Z859_A0A2K5Z859_MANLE_9568 and tr_A0A2K5ZVM6_A0A2K5ZVM6_MANLE_9568 are exactly identical!
WARNING: Duplicate sequences found: 42

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A0C4DH69/3_mltree/A0A0C4DH69.raxml.reduced.phy

Alignment comprises 1 partitions and 94 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 94 / 94
Gaps: 0.56 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A0C4DH69/3_mltree/A0A0C4DH69.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 94 / 7520
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -107971.138243] Initial branch length optimization
[00:00:03 -94840.140443] Model parameter optimization (eps = 10.000000)
[00:00:41 -94543.750615] AUTODETECT spr round 1 (radius: 5)
[00:02:32 -77804.337633] AUTODETECT spr round 2 (radius: 10)
[00:04:35 -62647.332472] AUTODETECT spr round 3 (radius: 15)
[00:06:57 -53212.785886] AUTODETECT spr round 4 (radius: 20)
[00:09:38 -49780.833603] AUTODETECT spr round 5 (radius: 25)
[00:12:38 -48889.005423] SPR radius for FAST iterations: 25 (autodetect)
[00:12:38 -48889.005423] Model parameter optimization (eps = 3.000000)
[00:12:58 -48654.748153] FAST spr round 1 (radius: 25)
[00:15:58 -41217.705699] FAST spr round 2 (radius: 25)
[00:17:58 -40370.687438] FAST spr round 3 (radius: 25)
[00:19:44 -40297.302529] FAST spr round 4 (radius: 25)
[00:21:16 -40292.211140] FAST spr round 5 (radius: 25)
[00:22:44 -40292.210781] Model parameter optimization (eps = 1.000000)
[00:23:05 -40248.677313] SLOW spr round 1 (radius: 5)
[00:25:19 -40212.490315] SLOW spr round 2 (radius: 5)
[00:27:27 -40198.951603] SLOW spr round 3 (radius: 5)
[00:29:33 -40197.267481] SLOW spr round 4 (radius: 5)
[00:31:32 -40197.267256] SLOW spr round 5 (radius: 10)
[00:33:37 -40196.940461] SLOW spr round 6 (radius: 5)
[00:36:10 -40196.940461] SLOW spr round 7 (radius: 10)
[00:38:34 -40196.324492] SLOW spr round 8 (radius: 5)
[00:41:02 -40196.324492] SLOW spr round 9 (radius: 10)
[00:43:22 -40194.778768] SLOW spr round 10 (radius: 5)
[00:45:51 -40194.778768] SLOW spr round 11 (radius: 10)
[00:48:10 -40194.633775] SLOW spr round 12 (radius: 5)
[00:50:40 -40194.632844] SLOW spr round 13 (radius: 10)
[00:52:58 -40194.632831] SLOW spr round 14 (radius: 15)
[00:56:50 -40194.209462] SLOW spr round 15 (radius: 5)
[00:59:28 -40194.209462] SLOW spr round 16 (radius: 10)
[01:01:55 -40194.209462] SLOW spr round 17 (radius: 15)
[01:05:40 -40194.122740] SLOW spr round 18 (radius: 20)
[01:11:19 -40193.898821] SLOW spr round 19 (radius: 5)
[01:14:02 -40192.346266] SLOW spr round 20 (radius: 5)
[01:16:22 -40192.346231] SLOW spr round 21 (radius: 10)
[01:18:33 -40192.346231] SLOW spr round 22 (radius: 15)
[01:22:35 -40192.346231] SLOW spr round 23 (radius: 20)
[01:28:05 -40192.346231] SLOW spr round 24 (radius: 25)
[01:34:28 -40191.223024] SLOW spr round 25 (radius: 5)
[01:37:11 -40191.222561] SLOW spr round 26 (radius: 10)
[01:39:50 -40191.222557] SLOW spr round 27 (radius: 15)
[01:43:33 -40191.222557] SLOW spr round 28 (radius: 20)
[01:49:13 -40191.222557] SLOW spr round 29 (radius: 25)
[01:55:01] [worker #1] ML tree search #2, logLikelihood: -40251.062623
[01:55:31 -40191.222557] Model parameter optimization (eps = 0.100000)

[01:55:41] [worker #0] ML tree search #1, logLikelihood: -40190.166969

[01:55:42 -107575.961293] Initial branch length optimization
[01:55:44 -94802.863329] Model parameter optimization (eps = 10.000000)
[01:56:15 -94509.875672] AUTODETECT spr round 1 (radius: 5)
[01:58:07 -77119.885294] AUTODETECT spr round 2 (radius: 10)
[02:00:07 -62447.707144] AUTODETECT spr round 3 (radius: 15)
[02:02:35 -52107.195957] AUTODETECT spr round 4 (radius: 20)
[02:05:34 -47665.677122] AUTODETECT spr round 5 (radius: 25)
[02:08:51 -46744.914475] SPR radius for FAST iterations: 25 (autodetect)
[02:08:51 -46744.914475] Model parameter optimization (eps = 3.000000)
[02:09:10 -46531.362202] FAST spr round 1 (radius: 25)
[02:11:49 -40912.769832] FAST spr round 2 (radius: 25)
[02:13:59 -40415.261192] FAST spr round 3 (radius: 25)
[02:15:51 -40330.289722] FAST spr round 4 (radius: 25)
[02:17:28 -40319.087873] FAST spr round 5 (radius: 25)
[02:19:00 -40318.281686] FAST spr round 6 (radius: 25)
[02:20:28 -40318.281447] Model parameter optimization (eps = 1.000000)
[02:20:46 -40305.222746] SLOW spr round 1 (radius: 5)
[02:22:42 -40281.348382] SLOW spr round 2 (radius: 5)
[02:24:32 -40280.152578] SLOW spr round 3 (radius: 5)
[02:26:17 -40280.150086] SLOW spr round 4 (radius: 10)
[02:28:06 -40277.428638] SLOW spr round 5 (radius: 5)
[02:30:16 -40275.371678] SLOW spr round 6 (radius: 5)
[02:32:12 -40275.371660] SLOW spr round 7 (radius: 10)
[02:34:04 -40275.344814] SLOW spr round 8 (radius: 15)
[02:37:09 -40273.685718] SLOW spr round 9 (radius: 5)
[02:39:21 -40272.285312] SLOW spr round 10 (radius: 5)
[02:41:18 -40272.285312] SLOW spr round 11 (radius: 10)
[02:43:12 -40272.285312] SLOW spr round 12 (radius: 15)
[02:46:13 -40272.285312] SLOW spr round 13 (radius: 20)
[02:50:33 -40270.266290] SLOW spr round 14 (radius: 5)
[02:52:48 -40270.266251] SLOW spr round 15 (radius: 10)
[02:54:57 -40270.266251] SLOW spr round 16 (radius: 15)
[02:57:47 -40270.266251] SLOW spr round 17 (radius: 20)
[03:02:10 -40268.432791] SLOW spr round 18 (radius: 5)
[03:04:25 -40267.594872] SLOW spr round 19 (radius: 5)
[03:06:24 -40267.594691] SLOW spr round 20 (radius: 10)
[03:08:19 -40267.594691] SLOW spr round 21 (radius: 15)
[03:11:23 -40267.594691] SLOW spr round 22 (radius: 20)
[03:15:47 -40257.878420] SLOW spr round 23 (radius: 5)
[03:18:01 -40257.877469] SLOW spr round 24 (radius: 10)
[03:20:11 -40257.877413] SLOW spr round 25 (radius: 15)
[03:23:05 -40257.813093] SLOW spr round 26 (radius: 20)
[03:27:33 -40256.815331] SLOW spr round 27 (radius: 5)
[03:29:51 -40255.292057] SLOW spr round 28 (radius: 5)
[03:31:50 -40255.292006] SLOW spr round 29 (radius: 10)
[03:33:45 -40253.678307] SLOW spr round 30 (radius: 5)
[03:35:54 -40246.770041] SLOW spr round 31 (radius: 5)
[03:37:48 -40246.702338] SLOW spr round 32 (radius: 10)
[03:39:42 -40243.475882] SLOW spr round 33 (radius: 5)
[03:41:49 -40242.975390] SLOW spr round 34 (radius: 5)
[03:43:45 -40241.167322] SLOW spr round 35 (radius: 5)
[03:45:33 -40241.163503] SLOW spr round 36 (radius: 10)
[03:47:23 -40241.163502] SLOW spr round 37 (radius: 15)
[03:50:39 -40241.163502] SLOW spr round 38 (radius: 20)
[03:55:03 -40241.135242] SLOW spr round 39 (radius: 25)
[04:00:34 -40241.135238] Model parameter optimization (eps = 0.100000)

[04:00:47] [worker #0] ML tree search #3, logLikelihood: -40240.573467

[04:00:47 -107514.580184] Initial branch length optimization
[04:00:50 -94604.109491] Model parameter optimization (eps = 10.000000)
[04:01:13 -94281.776051] AUTODETECT spr round 1 (radius: 5)
[04:03:04 -77233.749824] AUTODETECT spr round 2 (radius: 10)
[04:05:03 -62415.719981] AUTODETECT spr round 3 (radius: 15)
[04:07:28 -51666.955011] AUTODETECT spr round 4 (radius: 20)
[04:10:12 -49299.915934] AUTODETECT spr round 5 (radius: 25)
[04:12:27] [worker #1] ML tree search #4, logLikelihood: -40264.479483
[04:13:31 -47466.652019] SPR radius for FAST iterations: 25 (autodetect)
[04:13:31 -47466.652019] Model parameter optimization (eps = 3.000000)
[04:13:51 -47192.580708] FAST spr round 1 (radius: 25)
[04:16:36 -40780.747578] FAST spr round 2 (radius: 25)
[04:18:41 -40373.861827] FAST spr round 3 (radius: 25)
[04:20:30 -40332.525670] FAST spr round 4 (radius: 25)
[04:22:04 -40320.233541] FAST spr round 5 (radius: 25)
[04:23:33 -40320.233538] Model parameter optimization (eps = 1.000000)
[04:23:47 -40307.408135] SLOW spr round 1 (radius: 5)
[04:25:53 -40285.781119] SLOW spr round 2 (radius: 5)
[04:27:53 -40279.410889] SLOW spr round 3 (radius: 5)
[04:29:46 -40279.408579] SLOW spr round 4 (radius: 10)
[04:31:41 -40276.742490] SLOW spr round 5 (radius: 5)
[04:34:01 -40276.742405] SLOW spr round 6 (radius: 10)
[04:36:09 -40276.172798] SLOW spr round 7 (radius: 5)
[04:38:26 -40276.168574] SLOW spr round 8 (radius: 10)
[04:40:33 -40275.861370] SLOW spr round 9 (radius: 5)
[04:42:48 -40275.861368] SLOW spr round 10 (radius: 10)
[04:44:54 -40275.653633] SLOW spr round 11 (radius: 5)
[04:47:11 -40272.163482] SLOW spr round 12 (radius: 5)
[04:49:14 -40272.141613] SLOW spr round 13 (radius: 10)
[04:51:11 -40272.004517] SLOW spr round 14 (radius: 5)
[04:53:31 -40272.004494] SLOW spr round 15 (radius: 10)
[04:55:39 -40272.004494] SLOW spr round 16 (radius: 15)
[04:58:54 -40264.066645] SLOW spr round 17 (radius: 5)
[05:01:17 -40264.066641] SLOW spr round 18 (radius: 10)
[05:03:29 -40263.509163] SLOW spr round 19 (radius: 5)
[05:05:43 -40263.509158] SLOW spr round 20 (radius: 10)
[05:07:47 -40263.509158] SLOW spr round 21 (radius: 15)
[05:11:03 -40256.412098] SLOW spr round 22 (radius: 5)
[05:13:27 -40255.950723] SLOW spr round 23 (radius: 5)
[05:15:33 -40255.950720] SLOW spr round 24 (radius: 10)
[05:17:31 -40255.452374] SLOW spr round 25 (radius: 5)
[05:19:49 -40254.336823] SLOW spr round 26 (radius: 5)
[05:21:52 -40254.336822] SLOW spr round 27 (radius: 10)
[05:23:49 -40252.631236] SLOW spr round 28 (radius: 5)
[05:26:07 -40252.200366] SLOW spr round 29 (radius: 5)
[05:28:10 -40251.087442] SLOW spr round 30 (radius: 5)
[05:30:05 -40251.087442] SLOW spr round 31 (radius: 10)
[05:31:58 -40247.956702] SLOW spr round 32 (radius: 5)
[05:34:15 -40247.956698] SLOW spr round 33 (radius: 10)
[05:36:22 -40247.956698] SLOW spr round 34 (radius: 15)
[05:39:35 -40247.892672] SLOW spr round 35 (radius: 20)
[05:44:21 -40242.498272] SLOW spr round 36 (radius: 5)
[05:46:44 -40242.498257] SLOW spr round 37 (radius: 10)
[05:48:58 -40241.757143] SLOW spr round 38 (radius: 5)
[05:50:52] [worker #1] ML tree search #6, logLikelihood: -40311.494520
[05:51:12 -40239.484992] SLOW spr round 39 (radius: 5)
[05:53:12 -40239.484992] SLOW spr round 40 (radius: 10)
[05:55:06 -40239.484992] SLOW spr round 41 (radius: 15)
[05:58:27 -40239.484992] SLOW spr round 42 (radius: 20)
[06:03:04 -40239.484992] SLOW spr round 43 (radius: 25)
[06:08:32 -40239.484992] Model parameter optimization (eps = 0.100000)

[06:08:37] [worker #0] ML tree search #5, logLikelihood: -40239.436460

[06:08:38 -107612.485050] Initial branch length optimization
[06:08:40 -94760.951848] Model parameter optimization (eps = 10.000000)
[06:09:06 -94431.183670] AUTODETECT spr round 1 (radius: 5)
[06:10:58 -77624.448995] AUTODETECT spr round 2 (radius: 10)
[06:13:02 -61495.141024] AUTODETECT spr round 3 (radius: 15)
[06:15:33 -53237.501221] AUTODETECT spr round 4 (radius: 20)
[06:18:17 -50005.962122] AUTODETECT spr round 5 (radius: 25)
[06:21:21 -48725.872594] SPR radius for FAST iterations: 25 (autodetect)
[06:21:21 -48725.872594] Model parameter optimization (eps = 3.000000)
[06:21:41 -48569.055928] FAST spr round 1 (radius: 25)
[06:24:27 -42699.327242] FAST spr round 2 (radius: 25)
[06:26:35 -41075.785250] FAST spr round 3 (radius: 25)
[06:28:26 -40448.467527] FAST spr round 4 (radius: 25)
[06:30:08 -40391.298470] FAST spr round 5 (radius: 25)
[06:31:40 -40384.025899] FAST spr round 6 (radius: 25)
[06:33:10 -40380.832389] FAST spr round 7 (radius: 25)
[06:34:37 -40380.832359] Model parameter optimization (eps = 1.000000)
[06:34:51 -40362.615509] SLOW spr round 1 (radius: 5)
[06:36:50 -40342.052391] SLOW spr round 2 (radius: 5)
[06:38:44 -40341.345029] SLOW spr round 3 (radius: 5)
[06:40:33 -40341.256986] SLOW spr round 4 (radius: 10)
[06:42:28 -40333.979934] SLOW spr round 5 (radius: 5)
[06:44:46 -40332.397703] SLOW spr round 6 (radius: 5)
[06:46:50 -40329.605798] SLOW spr round 7 (radius: 5)
[06:48:44 -40329.605708] SLOW spr round 8 (radius: 10)
[06:50:37 -40326.787945] SLOW spr round 9 (radius: 5)
[06:52:51 -40326.078022] SLOW spr round 10 (radius: 5)
[06:54:51 -40326.077970] SLOW spr round 11 (radius: 10)
[06:56:45 -40325.403228] SLOW spr round 12 (radius: 5)
[06:58:58 -40321.595154] SLOW spr round 13 (radius: 5)
[07:00:57 -40321.198351] SLOW spr round 14 (radius: 5)
[07:02:50 -40321.198317] SLOW spr round 15 (radius: 10)
[07:04:42 -40320.960929] SLOW spr round 16 (radius: 5)
[07:06:56 -40320.271937] SLOW spr round 17 (radius: 5)
[07:08:55 -40320.271916] SLOW spr round 18 (radius: 10)
[07:10:50 -40320.271895] SLOW spr round 19 (radius: 15)
[07:13:58 -40320.271875] SLOW spr round 20 (radius: 20)
[07:18:25 -40315.590892] SLOW spr round 21 (radius: 5)
[07:20:44 -40315.590847] SLOW spr round 22 (radius: 10)
[07:22:54 -40315.590804] SLOW spr round 23 (radius: 15)
[07:25:52 -40315.419809] SLOW spr round 24 (radius: 5)
[07:28:13 -40313.022919] SLOW spr round 25 (radius: 5)
[07:30:15 -40313.022875] SLOW spr round 26 (radius: 10)
[07:32:10 -40311.621627] SLOW spr round 27 (radius: 5)
[07:34:24 -40310.203296] SLOW spr round 28 (radius: 5)
[07:36:25 -40309.024028] SLOW spr round 29 (radius: 5)
[07:38:18 -40309.023592] SLOW spr round 30 (radius: 10)
[07:40:09 -40309.023575] SLOW spr round 31 (radius: 15)
[07:43:24 -40309.023559] SLOW spr round 32 (radius: 20)
[07:47:51 -40309.023544] SLOW spr round 33 (radius: 25)
[07:53:29 -40305.362648] SLOW spr round 34 (radius: 5)
[07:55:49 -40305.362568] SLOW spr round 35 (radius: 10)
[07:57:37] [worker #1] ML tree search #8, logLikelihood: -40233.203510
[07:58:03 -40305.362553] SLOW spr round 36 (radius: 15)
[08:01:00 -40305.362538] SLOW spr round 37 (radius: 20)
[08:05:41 -40305.362523] SLOW spr round 38 (radius: 25)
[08:11:27 -40305.362508] Model parameter optimization (eps = 0.100000)

[08:11:38] [worker #0] ML tree search #7, logLikelihood: -40303.092095

[08:11:38 -107078.125421] Initial branch length optimization
[08:11:40 -94401.702579] Model parameter optimization (eps = 10.000000)
[08:12:07 -94060.350160] AUTODETECT spr round 1 (radius: 5)
[08:13:58 -76413.384868] AUTODETECT spr round 2 (radius: 10)
[08:16:00 -62765.946795] AUTODETECT spr round 3 (radius: 15)
[08:18:30 -51906.274327] AUTODETECT spr round 4 (radius: 20)
[08:21:15 -48772.867735] AUTODETECT spr round 5 (radius: 25)
[08:24:32 -46735.370461] SPR radius for FAST iterations: 25 (autodetect)
[08:24:32 -46735.370461] Model parameter optimization (eps = 3.000000)
[08:24:54 -46480.873059] FAST spr round 1 (radius: 25)
[08:27:37 -40839.755913] FAST spr round 2 (radius: 25)
[08:29:36 -40428.079959] FAST spr round 3 (radius: 25)
[08:31:19 -40368.506506] FAST spr round 4 (radius: 25)
[08:32:54 -40355.266510] FAST spr round 5 (radius: 25)
[08:34:23 -40355.265749] Model parameter optimization (eps = 1.000000)
[08:34:40 -40343.817283] SLOW spr round 1 (radius: 5)
[08:36:37 -40334.586849] SLOW spr round 2 (radius: 5)
[08:38:29 -40331.612280] SLOW spr round 3 (radius: 5)
[08:40:19 -40328.156521] SLOW spr round 4 (radius: 5)
[08:42:07 -40325.803511] SLOW spr round 5 (radius: 5)
[08:43:52 -40325.803409] SLOW spr round 6 (radius: 10)
[08:45:42 -40322.541149] SLOW spr round 7 (radius: 5)
[08:47:56 -40315.789395] SLOW spr round 8 (radius: 5)
[08:49:54 -40315.092504] SLOW spr round 9 (radius: 5)
[08:51:44 -40315.092399] SLOW spr round 10 (radius: 10)
[08:53:35 -40310.905959] SLOW spr round 11 (radius: 5)
[08:55:45 -40308.006332] SLOW spr round 12 (radius: 5)
[08:57:41 -40308.006332] SLOW spr round 13 (radius: 10)
[08:59:35 -40307.067491] SLOW spr round 14 (radius: 5)
[09:01:45 -40306.627610] SLOW spr round 15 (radius: 5)
[09:03:43 -40304.688430] SLOW spr round 16 (radius: 5)
[09:05:33 -40304.354117] SLOW spr round 17 (radius: 5)
[09:07:21 -40303.721987] SLOW spr round 18 (radius: 5)
[09:09:07 -40303.721866] SLOW spr round 19 (radius: 10)
[09:10:57 -40303.508195] SLOW spr round 20 (radius: 5)
[09:13:09 -40303.508148] SLOW spr round 21 (radius: 10)
[09:15:12 -40303.508147] SLOW spr round 22 (radius: 15)
[09:18:10 -40301.092790] SLOW spr round 23 (radius: 5)
[09:20:26 -40300.736528] SLOW spr round 24 (radius: 5)
[09:22:26 -40300.735637] SLOW spr round 25 (radius: 10)
[09:24:20 -40300.735625] SLOW spr round 26 (radius: 15)
[09:27:24 -40295.563511] SLOW spr round 27 (radius: 5)
[09:29:39 -40295.532683] SLOW spr round 28 (radius: 10)
[09:31:45 -40295.532676] SLOW spr round 29 (radius: 15)
[09:33:26] [worker #1] ML tree search #10, logLikelihood: -40255.126014
[09:34:40 -40295.532676] SLOW spr round 30 (radius: 20)
[09:39:02 -40295.484441] SLOW spr round 31 (radius: 25)
[09:44:25 -40295.484360] Model parameter optimization (eps = 0.100000)

[09:44:32] [worker #0] ML tree search #9, logLikelihood: -40295.428838

[09:44:32 -107582.888856] Initial branch length optimization
[09:44:34 -94552.303680] Model parameter optimization (eps = 10.000000)
[09:44:58 -94213.426093] AUTODETECT spr round 1 (radius: 5)
[09:46:52 -77218.527605] AUTODETECT spr round 2 (radius: 10)
[09:48:56 -62607.609243] AUTODETECT spr round 3 (radius: 15)
[09:51:32 -51812.058787] AUTODETECT spr round 4 (radius: 20)
[09:54:15 -48387.838503] AUTODETECT spr round 5 (radius: 25)
[09:57:35 -47155.021678] SPR radius for FAST iterations: 25 (autodetect)
[09:57:35 -47155.021678] Model parameter optimization (eps = 3.000000)
[09:57:52 -46939.600654] FAST spr round 1 (radius: 25)
[10:00:37 -40786.561691] FAST spr round 2 (radius: 25)
[10:02:39 -40445.809424] FAST spr round 3 (radius: 25)
[10:04:26 -40402.916759] FAST spr round 4 (radius: 25)
[10:06:08 -40376.333648] FAST spr round 5 (radius: 25)
[10:07:42 -40371.056979] FAST spr round 6 (radius: 25)
[10:09:13 -40369.460172] FAST spr round 7 (radius: 25)
[10:10:44 -40368.049721] FAST spr round 8 (radius: 25)
[10:12:13 -40368.049655] Model parameter optimization (eps = 1.000000)
[10:12:24 -40363.435148] SLOW spr round 1 (radius: 5)
[10:14:22 -40356.416357] SLOW spr round 2 (radius: 5)
[10:16:14 -40353.424274] SLOW spr round 3 (radius: 5)
[10:18:04 -40353.424168] SLOW spr round 4 (radius: 10)
[10:19:55 -40351.921694] SLOW spr round 5 (radius: 5)
[10:22:08 -40351.921041] SLOW spr round 6 (radius: 10)
[10:24:14 -40351.719042] SLOW spr round 7 (radius: 5)
[10:26:27 -40349.946543] SLOW spr round 8 (radius: 5)
[10:28:26 -40349.946163] SLOW spr round 9 (radius: 10)
[10:30:21 -40349.299974] SLOW spr round 10 (radius: 5)
[10:32:37 -40347.214233] SLOW spr round 11 (radius: 5)
[10:34:39 -40344.927944] SLOW spr round 12 (radius: 5)
[10:36:32 -40344.918020] SLOW spr round 13 (radius: 10)
[10:38:24 -40344.356061] SLOW spr round 14 (radius: 5)
[10:40:35 -40344.355555] SLOW spr round 15 (radius: 10)
[10:42:38 -40343.439909] SLOW spr round 16 (radius: 5)
[10:44:47 -40343.439782] SLOW spr round 17 (radius: 10)
[10:46:48 -40342.577459] SLOW spr round 18 (radius: 5)
[10:48:57 -40342.106542] SLOW spr round 19 (radius: 5)
[10:50:57 -40342.105647] SLOW spr round 20 (radius: 10)
[10:52:50 -40341.961381] SLOW spr round 21 (radius: 5)
[10:55:01 -40341.961363] SLOW spr round 22 (radius: 10)
[10:57:04 -40341.904808] SLOW spr round 23 (radius: 15)
[11:00:16 -40326.017667] SLOW spr round 24 (radius: 5)
[11:02:38 -40324.396802] SLOW spr round 25 (radius: 5)
[11:04:46 -40324.396771] SLOW spr round 26 (radius: 10)
[11:06:45 -40324.396771] SLOW spr round 27 (radius: 15)
[11:10:06 -40324.396771] SLOW spr round 28 (radius: 20)
[11:14:40 -40322.186066] SLOW spr round 29 (radius: 5)
[11:17:05 -40320.443236] SLOW spr round 30 (radius: 5)
[11:19:13 -40320.443231] SLOW spr round 31 (radius: 10)
[11:21:14 -40320.443231] SLOW spr round 32 (radius: 15)
[11:24:33 -40320.443231] SLOW spr round 33 (radius: 20)
[11:29:05 -40320.024175] SLOW spr round 34 (radius: 5)
[11:31:27 -40320.024169] SLOW spr round 35 (radius: 10)
[11:33:44 -40320.024169] SLOW spr round 36 (radius: 15)
[11:36:51 -40320.024169] SLOW spr round 37 (radius: 20)
[11:41:30 -40320.024169] SLOW spr round 38 (radius: 25)
[11:47:00 -40319.966165] Model parameter optimization (eps = 0.100000)

[11:47:08] [worker #0] ML tree search #11, logLikelihood: -40319.828213

[11:47:09 -107457.229854] Initial branch length optimization
[11:47:11 -94442.490572] Model parameter optimization (eps = 10.000000)
[11:47:41 -94122.638113] AUTODETECT spr round 1 (radius: 5)
[11:49:37 -77392.055816] AUTODETECT spr round 2 (radius: 10)
[11:51:41 -62085.360743] AUTODETECT spr round 3 (radius: 15)
[11:54:03 -53112.857587] AUTODETECT spr round 4 (radius: 20)
[11:57:05 -48355.705308] AUTODETECT spr round 5 (radius: 25)
[12:00:28 -47014.036348] SPR radius for FAST iterations: 25 (autodetect)
[12:00:28 -47014.036348] Model parameter optimization (eps = 3.000000)
[12:00:56 -46809.669894] FAST spr round 1 (radius: 25)
[12:03:35 -40935.228622] FAST spr round 2 (radius: 25)
[12:05:33 -40427.432417] FAST spr round 3 (radius: 25)
[12:07:19 -40338.776785] FAST spr round 4 (radius: 25)
[12:08:57 -40316.388729] FAST spr round 5 (radius: 25)
[12:10:27 -40316.203282] FAST spr round 6 (radius: 25)
[12:11:55 -40316.203247] Model parameter optimization (eps = 1.000000)
[12:12:08 -40303.622766] SLOW spr round 1 (radius: 5)
[12:14:05 -40282.409980] SLOW spr round 2 (radius: 5)
[12:15:57 -40275.919424] SLOW spr round 3 (radius: 5)
[12:17:47 -40271.200087] SLOW spr round 4 (radius: 5)
[12:19:32 -40271.162019] SLOW spr round 5 (radius: 10)
[12:21:21 -40268.944504] SLOW spr round 6 (radius: 5)
[12:23:33 -40266.777982] SLOW spr round 7 (radius: 5)
[12:25:30 -40266.777964] SLOW spr round 8 (radius: 10)
[12:27:23 -40266.227208] SLOW spr round 9 (radius: 5)
[12:29:32 -40264.917449] SLOW spr round 10 (radius: 5)
[12:31:28 -40264.917449] SLOW spr round 11 (radius: 10)
[12:33:20 -40264.857077] SLOW spr round 12 (radius: 15)
[12:36:29 -40264.481921] SLOW spr round 13 (radius: 5)
[12:38:44 -40264.418822] SLOW spr round 14 (radius: 10)
[12:40:29] [worker #1] ML tree search #12, logLikelihood: -40266.602650
[12:40:49 -40261.767153] SLOW spr round 15 (radius: 5)
[12:42:57 -40258.229936] SLOW spr round 16 (radius: 5)
[12:44:51 -40258.229873] SLOW spr round 17 (radius: 10)
[12:46:43 -40258.229873] SLOW spr round 18 (radius: 15)
[12:49:59 -40258.229873] SLOW spr round 19 (radius: 20)
[12:54:13 -40257.298000] SLOW spr round 20 (radius: 5)
[12:56:28 -40257.297992] SLOW spr round 21 (radius: 10)
[12:58:39 -40256.684855] SLOW spr round 22 (radius: 5)
[13:00:43 -40256.684756] SLOW spr round 23 (radius: 10)
[13:02:41 -40256.684756] SLOW spr round 24 (radius: 15)
[13:05:46 -40256.684756] SLOW spr round 25 (radius: 20)
[13:10:03 -40256.684756] SLOW spr round 26 (radius: 25)
[13:15:05 -40256.684756] Model parameter optimization (eps = 0.100000)

[13:15:10] [worker #0] ML tree search #13, logLikelihood: -40256.629375

[13:15:10 -107896.000603] Initial branch length optimization
[13:15:13 -94770.439715] Model parameter optimization (eps = 10.000000)
[13:15:38 -94458.182136] AUTODETECT spr round 1 (radius: 5)
[13:17:33 -78174.808328] AUTODETECT spr round 2 (radius: 10)
[13:19:35 -63076.327822] AUTODETECT spr round 3 (radius: 15)
[13:22:04 -54595.271661] AUTODETECT spr round 4 (radius: 20)
[13:25:13 -49112.395167] AUTODETECT spr round 5 (radius: 25)
[13:28:26 -47652.532691] SPR radius for FAST iterations: 25 (autodetect)
[13:28:26 -47652.532691] Model parameter optimization (eps = 3.000000)
[13:28:42 -47496.768679] FAST spr round 1 (radius: 25)
[13:31:28 -40865.058572] FAST spr round 2 (radius: 25)
[13:33:28 -40392.314854] FAST spr round 3 (radius: 25)
[13:35:15 -40358.622300] FAST spr round 4 (radius: 25)
[13:36:50 -40350.914608] FAST spr round 5 (radius: 25)
[13:38:20 -40350.914605] Model parameter optimization (eps = 1.000000)
[13:38:36 -40338.245227] SLOW spr round 1 (radius: 5)
[13:40:33 -40326.052581] SLOW spr round 2 (radius: 5)
[13:42:26 -40315.765938] SLOW spr round 3 (radius: 5)
[13:44:13 -40315.654101] SLOW spr round 4 (radius: 5)
[13:46:00 -40315.654091] SLOW spr round 5 (radius: 10)
[13:47:49 -40309.790347] SLOW spr round 6 (radius: 5)
[13:50:04 -40304.987015] SLOW spr round 7 (radius: 5)
[13:52:03 -40303.627250] SLOW spr round 8 (radius: 5)
[13:53:54 -40303.627246] SLOW spr round 9 (radius: 10)
[13:55:45 -40301.757011] SLOW spr round 10 (radius: 5)
[13:57:58 -40301.756756] SLOW spr round 11 (radius: 10)
[14:00:01 -40301.029090] SLOW spr round 12 (radius: 5)
[14:02:13 -40297.605587] SLOW spr round 13 (radius: 5)
[14:04:11 -40296.612016] SLOW spr round 14 (radius: 5)
[14:06:01 -40296.612016] SLOW spr round 15 (radius: 10)
[14:07:52 -40295.924015] SLOW spr round 16 (radius: 5)
[14:10:03 -40295.923887] SLOW spr round 17 (radius: 10)
[14:12:05 -40295.923887] SLOW spr round 18 (radius: 15)
[14:15:09 -40293.003069] SLOW spr round 19 (radius: 5)
[14:17:27 -40292.267767] SLOW spr round 20 (radius: 5)
[14:19:26 -40292.267749] SLOW spr round 21 (radius: 10)
[14:21:21 -40292.267749] SLOW spr round 22 (radius: 15)
[14:24:32 -40292.267749] SLOW spr round 23 (radius: 20)
[14:27:01] [worker #1] ML tree search #14, logLikelihood: -40210.106109
[14:28:48 -40286.377706] SLOW spr round 24 (radius: 5)
[14:31:05 -40286.377672] SLOW spr round 25 (radius: 10)
[14:33:16 -40286.377672] SLOW spr round 26 (radius: 15)
[14:36:15 -40284.970229] SLOW spr round 27 (radius: 5)
[14:38:29 -40284.970212] SLOW spr round 28 (radius: 10)
[14:40:36 -40284.970212] SLOW spr round 29 (radius: 15)
[14:43:35 -40284.970212] SLOW spr round 30 (radius: 20)
[14:47:54 -40284.970212] SLOW spr round 31 (radius: 25)
[14:52:37 -40284.970212] Model parameter optimization (eps = 0.100000)

[14:52:43] [worker #0] ML tree search #15, logLikelihood: -40284.894338

[14:52:43 -107775.389954] Initial branch length optimization
[14:52:45 -94500.883665] Model parameter optimization (eps = 10.000000)
[14:53:18 -94179.606562] AUTODETECT spr round 1 (radius: 5)
[14:55:12 -77455.529899] AUTODETECT spr round 2 (radius: 10)
[14:57:15 -62374.428968] AUTODETECT spr round 3 (radius: 15)
[14:59:55 -51095.155896] AUTODETECT spr round 4 (radius: 20)
[15:03:00 -46786.220246] AUTODETECT spr round 5 (radius: 25)
[15:06:33 -45937.510965] SPR radius for FAST iterations: 25 (autodetect)
[15:06:33 -45937.510965] Model parameter optimization (eps = 3.000000)
[15:06:53 -45712.093108] FAST spr round 1 (radius: 25)
[15:09:36 -40671.991632] FAST spr round 2 (radius: 25)
[15:11:30 -40443.965297] FAST spr round 3 (radius: 25)
[15:13:15 -40398.948435] FAST spr round 4 (radius: 25)
[15:14:49 -40392.844705] FAST spr round 5 (radius: 25)
[15:16:20 -40390.467852] FAST spr round 6 (radius: 25)
[15:17:49 -40390.467798] Model parameter optimization (eps = 1.000000)
[15:18:06 -40382.700891] SLOW spr round 1 (radius: 5)
[15:20:04 -40352.500729] SLOW spr round 2 (radius: 5)
[15:21:57 -40350.438519] SLOW spr round 3 (radius: 5)
[15:23:47 -40346.910630] SLOW spr round 4 (radius: 5)
[15:25:33 -40346.910082] SLOW spr round 5 (radius: 10)
[15:27:24 -40340.676671] SLOW spr round 6 (radius: 5)
[15:29:36 -40338.529651] SLOW spr round 7 (radius: 5)
[15:31:34 -40338.423460] SLOW spr round 8 (radius: 5)
[15:33:24 -40338.423453] SLOW spr round 9 (radius: 10)
[15:35:15 -40337.913107] SLOW spr round 10 (radius: 5)
[15:37:24 -40337.647279] SLOW spr round 11 (radius: 5)
[15:39:21 -40337.646553] SLOW spr round 12 (radius: 10)
[15:41:15 -40334.933071] SLOW spr round 13 (radius: 5)
[15:43:23 -40331.546685] SLOW spr round 14 (radius: 5)
[15:45:19 -40331.546674] SLOW spr round 15 (radius: 10)
[15:47:13 -40331.181729] SLOW spr round 16 (radius: 5)
[15:49:21 -40329.885472] SLOW spr round 17 (radius: 5)
[15:51:17 -40329.885388] SLOW spr round 18 (radius: 10)
[15:53:11 -40329.240137] SLOW spr round 19 (radius: 5)
[15:55:18 -40329.240130] SLOW spr round 20 (radius: 10)
[15:57:19 -40329.240130] SLOW spr round 21 (radius: 15)
[16:00:14 -40327.796635] SLOW spr round 22 (radius: 5)
[16:02:28 -40327.796437] SLOW spr round 23 (radius: 10)
[16:04:34 -40327.796437] SLOW spr round 24 (radius: 15)
[16:07:27 -40327.796437] SLOW spr round 25 (radius: 20)
[16:11:29 -40327.796437] SLOW spr round 26 (radius: 25)
[16:16:02 -40324.317572] SLOW spr round 27 (radius: 5)
[16:18:20 -40291.863035] SLOW spr round 28 (radius: 5)
[16:20:22 -40290.334719] SLOW spr round 29 (radius: 5)
[16:22:15 -40290.334688] SLOW spr round 30 (radius: 10)
[16:24:07 -40290.334688] SLOW spr round 31 (radius: 15)
[16:27:15 -40290.334688] SLOW spr round 32 (radius: 20)
[16:31:11 -40290.334688] SLOW spr round 33 (radius: 25)
[16:35:21] [worker #1] ML tree search #16, logLikelihood: -40312.110922
[16:35:45 -40290.334688] Model parameter optimization (eps = 0.100000)

[16:35:52] [worker #0] ML tree search #17, logLikelihood: -40290.252278

[16:35:52 -108204.923938] Initial branch length optimization
[16:35:54 -95124.803913] Model parameter optimization (eps = 10.000000)
[16:36:18 -94799.869015] AUTODETECT spr round 1 (radius: 5)
[16:38:12 -76974.089753] AUTODETECT spr round 2 (radius: 10)
[16:40:21 -61422.141509] AUTODETECT spr round 3 (radius: 15)
[16:42:55 -50839.075259] AUTODETECT spr round 4 (radius: 20)
[16:45:54 -47777.195555] AUTODETECT spr round 5 (radius: 25)
[16:48:57 -46040.552338] SPR radius for FAST iterations: 25 (autodetect)
[16:48:57 -46040.552338] Model parameter optimization (eps = 3.000000)
[16:49:22 -45853.565485] FAST spr round 1 (radius: 25)
[16:52:01 -40854.694262] FAST spr round 2 (radius: 25)
[16:54:07 -40418.739538] FAST spr round 3 (radius: 25)
[16:55:55 -40355.316429] FAST spr round 4 (radius: 25)
[16:57:32 -40352.205267] FAST spr round 5 (radius: 25)
[16:59:05 -40349.579112] FAST spr round 6 (radius: 25)
[17:00:34 -40349.579112] Model parameter optimization (eps = 1.000000)
[17:00:51 -40334.385556] SLOW spr round 1 (radius: 5)
[17:02:49 -40320.388154] SLOW spr round 2 (radius: 5)
[17:04:42 -40318.629406] SLOW spr round 3 (radius: 5)
[17:06:31 -40318.629406] SLOW spr round 4 (radius: 10)
[17:08:23 -40316.443795] SLOW spr round 5 (radius: 5)
[17:10:37 -40311.327046] SLOW spr round 6 (radius: 5)
[17:12:34 -40311.216049] SLOW spr round 7 (radius: 5)
[17:14:25 -40311.216040] SLOW spr round 8 (radius: 10)
[17:16:16 -40309.900270] SLOW spr round 9 (radius: 5)
[17:18:28 -40307.645788] SLOW spr round 10 (radius: 5)
[17:20:25 -40307.645712] SLOW spr round 11 (radius: 10)
[17:22:19 -40306.919144] SLOW spr round 12 (radius: 5)
[17:24:27 -40306.919024] SLOW spr round 13 (radius: 10)
[17:26:28 -40306.271682] SLOW spr round 14 (radius: 5)
[17:28:35 -40306.271439] SLOW spr round 15 (radius: 10)
[17:30:35 -40305.960496] SLOW spr round 16 (radius: 5)
[17:32:42 -40305.960336] SLOW spr round 17 (radius: 10)
[17:34:44 -40304.844262] SLOW spr round 18 (radius: 5)
[17:36:51 -40304.844262] SLOW spr round 19 (radius: 10)
[17:38:53 -40304.844262] SLOW spr round 20 (radius: 15)
[17:41:52 -40298.361219] SLOW spr round 21 (radius: 5)
[17:44:12 -40295.555335] SLOW spr round 22 (radius: 5)
[17:46:14 -40295.555225] SLOW spr round 23 (radius: 10)
[17:48:11 -40295.555224] SLOW spr round 24 (radius: 15)
[17:51:19 -40293.865122] SLOW spr round 25 (radius: 5)
[17:53:37 -40293.865095] SLOW spr round 26 (radius: 10)
[17:55:46 -40293.865095] SLOW spr round 27 (radius: 15)
[17:58:44 -40293.465914] SLOW spr round 28 (radius: 5)
[18:01:04 -40283.606635] SLOW spr round 29 (radius: 5)
[18:03:10 -40275.738657] SLOW spr round 30 (radius: 5)
[18:05:05 -40274.701303] SLOW spr round 31 (radius: 5)
[18:06:56 -40274.701281] SLOW spr round 32 (radius: 10)
[18:08:03] [worker #1] ML tree search #18, logLikelihood: -40268.627326
[18:08:49 -40269.483953] SLOW spr round 33 (radius: 5)
[18:11:07 -40265.144742] SLOW spr round 34 (radius: 5)
[18:13:09 -40263.263554] SLOW spr round 35 (radius: 5)
[18:15:02 -40263.263266] SLOW spr round 36 (radius: 10)
[18:16:55 -40263.263260] SLOW spr round 37 (radius: 15)
[18:20:06 -40262.576650] SLOW spr round 38 (radius: 5)
[18:22:21 -40262.576572] SLOW spr round 39 (radius: 10)
[18:24:29 -40262.576571] SLOW spr round 40 (radius: 15)
[18:27:21 -40262.576571] SLOW spr round 41 (radius: 20)
[18:31:22 -40261.159667] SLOW spr round 42 (radius: 5)
[18:33:41 -40261.150828] SLOW spr round 43 (radius: 10)
[18:35:53 -40261.148522] SLOW spr round 44 (radius: 15)
[18:38:44 -40261.147673] SLOW spr round 45 (radius: 20)
[18:42:46 -40260.981469] SLOW spr round 46 (radius: 5)
[18:45:04 -40260.981426] SLOW spr round 47 (radius: 10)
[18:47:15 -40260.981426] SLOW spr round 48 (radius: 15)
[18:50:06 -40260.981426] SLOW spr round 49 (radius: 20)
[18:54:08 -40260.981426] SLOW spr round 50 (radius: 25)
[18:58:32 -40260.981426] Model parameter optimization (eps = 0.100000)

[18:58:45] [worker #0] ML tree search #19, logLikelihood: -40259.410870

[20:16:35] [worker #1] ML tree search #20, logLikelihood: -40235.869891

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.310355,0.434461) (0.223210,0.491501) (0.423913,1.141615) (0.042522,6.385168) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -40190.166969

AIC score: 84390.333938 / AICc score: 8128450.333938 / BIC score: 89489.639976
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=94).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A0C4DH69/3_mltree/A0A0C4DH69.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A0C4DH69/3_mltree/A0A0C4DH69.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A0C4DH69/3_mltree/A0A0C4DH69.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A0C4DH69/3_mltree/A0A0C4DH69.raxml.log

Analysis started: 30-Jun-2021 19:21:51 / finished: 01-Jul-2021 15:38:27

Elapsed time: 72995.726 seconds