RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 15:07:12 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/2_msa/A0A087WSY6_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/3_mltree/A0A087WSY6 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/2_msa/A0A087WSY6_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 120 sites WARNING: Sequences tr_A0A140T8P9_A0A140T8P9_MOUSE_10090 and sp_P01638_KV5A6_MOUSE_10090 are exactly identical! WARNING: Sequences sp_P01654_KV3A1_MOUSE_10090 and sp_P01656_KV3A3_MOUSE_10090 are exactly identical! WARNING: Sequences sp_P01655_KV3A2_MOUSE_10090 and sp_P03977_KV3A4_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A2I2YMS6_A0A2I2YMS6_GORGO_9595 and tr_A0A2R9AK91_A0A2R9AK91_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3RYP8_A0A2I3RYP8_PANTR_9598 and tr_A0A2R9AL33_A0A2R9AL33_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3SY06_A0A2I3SY06_PANTR_9598 and tr_A0A2R9AMP3_A0A2R9AMP3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3TAX1_A0A2I3TAX1_PANTR_9598 and tr_A0A2R9AKE1_A0A2R9AKE1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2R7U4_H2R7U4_PANTR_9598 and tr_A0A2R8ZT75_A0A2R8ZT75_PANPA_9597 are exactly identical! WARNING: Sequences sp_A0A075B6P5_KV228_HUMAN_9606 and sp_P01615_KVD28_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A0A087WW87_KV240_HUMAN_9606 and sp_P01614_KVD40_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A0A0B4J2D9_KVD13_HUMAN_9606 and sp_P0DP09_KV113_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P01593_KVD33_HUMAN_9606 and sp_P01594_KV133_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P01597_KV139_HUMAN_9606 and sp_P04432_KVD39_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A1B8XXX6_A0A1B8XXX6_XENTR_8364 and tr_F6YDR4_F6YDR4_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A1B8XZI5_A0A1B8XZI5_XENTR_8364 and tr_F7CRI8_F7CRI8_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A096MV46_A0A096MV46_PAPAN_9555 and tr_A0A2K6ALT7_A0A2K6ALT7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096NGH2_A0A096NGH2_PAPAN_9555 and tr_A0A2K5NS08_A0A2K5NS08_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3LZC8_A0A2I3LZC8_PAPAN_9555 and tr_A0A2K6B468_A0A2K6B468_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3LZC8_A0A2I3LZC8_PAPAN_9555 and tr_A0A2K5XFL9_A0A2K5XFL9_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3N776_A0A2I3N776_PAPAN_9555 and tr_A0A2K5NT28_A0A2K5NT28_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3N776_A0A2I3N776_PAPAN_9555 and tr_A0A2K6ALR0_A0A2K6ALR0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3NA91_A0A2I3NA91_PAPAN_9555 and tr_A0A2K5L3Y1_A0A2K5L3Y1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3NAX5_A0A2I3NAX5_PAPAN_9555 and tr_A0A2K6AT13_A0A2K6AT13_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2K5LXG6_A0A2K5LXG6_CERAT_9531 and tr_A0A2K5Z1U6_A0A2K5Z1U6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2K5Z859_A0A2K5Z859_MANLE_9568 and tr_A0A2K5ZVM6_A0A2K5ZVM6_MANLE_9568 are exactly identical! WARNING: Duplicate sequences found: 25 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/3_mltree/A0A087WSY6.raxml.reduced.phy Alignment comprises 1 partitions and 120 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 120 / 120 Gaps: 5.80 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/3_mltree/A0A087WSY6.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 120 / 9600 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -145520.172983] Initial branch length optimization [00:00:02 -128491.728136] Model parameter optimization (eps = 10.000000) [00:00:32 -128099.615498] AUTODETECT spr round 1 (radius: 5) [00:02:43 -97240.471082] AUTODETECT spr round 2 (radius: 10) [00:04:59 -76459.152773] AUTODETECT spr round 3 (radius: 15) [00:07:47 -66648.563396] AUTODETECT spr round 4 (radius: 20) [00:10:50 -63176.875262] AUTODETECT spr round 5 (radius: 25) [00:15:05 -61731.304982] SPR radius for FAST iterations: 25 (autodetect) [00:15:05 -61731.304982] Model parameter optimization (eps = 3.000000) [00:15:30 -61544.056850] FAST spr round 1 (radius: 25) [00:18:31 -52919.545534] FAST spr round 2 (radius: 25) [00:20:42 -52406.129610] FAST spr round 3 (radius: 25) [00:22:43 -52361.040646] FAST spr round 4 (radius: 25) [00:24:33 -52348.515997] FAST spr round 5 (radius: 25) [00:26:16 -52347.705658] FAST spr round 6 (radius: 25) [00:27:56 -52347.705425] Model parameter optimization (eps = 1.000000) [00:28:14 -52335.469629] SLOW spr round 1 (radius: 5) [00:30:32 -52309.304605] SLOW spr round 2 (radius: 5) [00:32:40 -52308.061021] SLOW spr round 3 (radius: 5) [00:34:43 -52308.009851] SLOW spr round 4 (radius: 10) [00:36:49 -52306.357476] SLOW spr round 5 (radius: 5) [00:39:23 -52300.519402] SLOW spr round 6 (radius: 5) [00:41:39 -52300.490325] SLOW spr round 7 (radius: 10) [00:43:49 -52299.822267] SLOW spr round 8 (radius: 5) [00:46:17 -52299.821944] SLOW spr round 9 (radius: 10) [00:48:37 -52299.176554] SLOW spr round 10 (radius: 5) [00:51:06 -52298.330113] SLOW spr round 11 (radius: 5) [00:53:19 -52298.330100] SLOW spr round 12 (radius: 10) [00:55:29 -52297.924586] SLOW spr round 13 (radius: 5) [00:57:57 -52297.507467] SLOW spr round 14 (radius: 5) [01:00:11 -52297.507380] SLOW spr round 15 (radius: 10) [01:02:22 -52297.457201] SLOW spr round 16 (radius: 15) [01:05:35 -52297.457201] SLOW spr round 17 (radius: 20) [01:09:56 -52297.457201] SLOW spr round 18 (radius: 25) [01:15:35 -52280.409730] SLOW spr round 19 (radius: 5) [01:18:15 -52250.393064] SLOW spr round 20 (radius: 5) [01:20:35 -52250.393064] SLOW spr round 21 (radius: 10) [01:22:50 -52249.507869] SLOW spr round 22 (radius: 5) [01:25:19 -52185.274248] SLOW spr round 23 (radius: 5) [01:27:32 -52185.271838] SLOW spr round 24 (radius: 10) [01:29:42 -52184.796526] SLOW spr round 25 (radius: 5) [01:32:13 -52180.462571] SLOW spr round 26 (radius: 5) [01:34:26 -52180.462561] SLOW spr round 27 (radius: 10) [01:36:36 -52180.462561] SLOW spr round 28 (radius: 15) [01:39:49 -52180.462560] SLOW spr round 29 (radius: 20) [01:44:08 -52180.462560] SLOW spr round 30 (radius: 25) [01:49:46 -52180.311651] SLOW spr round 31 (radius: 5) [01:52:26 -52180.275552] SLOW spr round 32 (radius: 10) [01:55:02 -52176.915624] SLOW spr round 33 (radius: 5) [01:57:31 -52170.841377] SLOW spr round 34 (radius: 5) [01:59:47 -52165.548825] SLOW spr round 35 (radius: 5) [02:01:54 -52163.908396] SLOW spr round 36 (radius: 5) [02:03:57 -52163.908394] SLOW spr round 37 (radius: 10) [02:06:03 -52163.823728] SLOW spr round 38 (radius: 15) [02:09:20 -52163.191075] SLOW spr round 39 (radius: 5) [02:09:43] [worker #1] ML tree search #2, logLikelihood: -52315.738837 [02:11:59 -52161.788240] SLOW spr round 40 (radius: 5) [02:14:17 -52161.787002] SLOW spr round 41 (radius: 10) [02:16:30 -52161.786460] SLOW spr round 42 (radius: 15) RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 16-Jul-2021 09:12:17 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/2_msa/A0A087WSY6_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/3_mltree/A0A087WSY6 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF WARNING: The model you specified on the command line (LG4X) will be ignored since the binary MSA file already contains a model definition. If you want to change the model, please re-run RAxML-NG with the original PHYLIP/FASTA alignment and --redo option. [00:00:00] Loading binary alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/3_mltree/A0A087WSY6.raxml.rba [00:00:00] Alignment comprises 1001 taxa, 1 partitions and 120 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 120 / 120 Gaps: 5.80 % Invariant sites: 0.00 % Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] NOTE: Resuming execution from checkpoint (logLH: -52161.79, ML trees: 1, bootstraps: 0) [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 120 / 9600 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -52161.786460] SPR radius for FAST iterations: 25 (autodetect) [00:00:00 -52161.786460] SLOW spr round 42 (radius: 15) [00:03:12 -52161.786237] SLOW spr round 43 (radius: 20) [00:07:38 -52161.786112] SLOW spr round 44 (radius: 25) [00:13:25 -52161.786043] Model parameter optimization (eps = 0.100000) [00:13:35] [worker #0] ML tree search #1, logLikelihood: -52160.146531 [00:13:35 -144447.927423] Initial branch length optimization [00:13:38 -127870.936652] Model parameter optimization (eps = 10.000000) [00:14:24 -127391.905963] AUTODETECT spr round 1 (radius: 5) [00:16:35 -96652.825960] AUTODETECT spr round 2 (radius: 10) [00:18:54 -76370.013467] AUTODETECT spr round 3 (radius: 15) [00:21:31 -64079.999401] AUTODETECT spr round 4 (radius: 20) [00:24:36 -60947.645329] AUTODETECT spr round 5 (radius: 25) [00:28:03 -60225.651164] SPR radius for FAST iterations: 25 (autodetect) [00:28:03 -60225.651164] Model parameter optimization (eps = 3.000000) [00:28:36 -60010.706847] FAST spr round 1 (radius: 25) [00:31:39 -52770.599137] FAST spr round 2 (radius: 25) [00:33:48 -52294.939774] FAST spr round 3 (radius: 25) [00:35:43 -52224.006700] FAST spr round 4 (radius: 25) [00:37:29 -52221.847843] FAST spr round 5 (radius: 25) [00:39:09 -52221.847817] Model parameter optimization (eps = 1.000000) [00:39:33 -52206.213182] SLOW spr round 1 (radius: 5) [00:41:53 -52180.906272] SLOW spr round 2 (radius: 5) [00:44:07 -52169.581448] SLOW spr round 3 (radius: 5) [00:46:14 -52168.711258] SLOW spr round 4 (radius: 5) [00:48:18 -52168.711125] SLOW spr round 5 (radius: 10) [00:50:29 -52167.078598] SLOW spr round 6 (radius: 5) [00:53:08 -52162.573512] SLOW spr round 7 (radius: 5) [00:55:28 -52161.098000] SLOW spr round 8 (radius: 5) [00:57:40 -52161.097979] SLOW spr round 9 (radius: 10) [00:59:52 -52160.521818] SLOW spr round 10 (radius: 5) [01:02:29 -52160.252699] SLOW spr round 11 (radius: 5) [01:04:49 -52160.252692] SLOW spr round 12 (radius: 10) [01:07:06 -52159.832793] SLOW spr round 13 (radius: 5) [01:09:41 -52159.829195] SLOW spr round 14 (radius: 10) [01:12:08 -52159.745578] SLOW spr round 15 (radius: 15) [01:15:26 -52159.743747] SLOW spr round 16 (radius: 20) [01:20:00 -52159.009534] SLOW spr round 17 (radius: 5) [01:22:48 -52159.009408] SLOW spr round 18 (radius: 10) [01:25:32 -52159.009408] SLOW spr round 19 (radius: 15) [01:28:48 -52159.009407] SLOW spr round 20 (radius: 20) [01:33:21 -52159.009407] SLOW spr round 21 (radius: 25) [01:39:37 -52159.009407] Model parameter optimization (eps = 0.100000) [01:39:43] [worker #0] ML tree search #3, logLikelihood: -52158.990484 [01:39:43 -145400.940567] Initial branch length optimization [01:39:45 -128628.761742] Model parameter optimization (eps = 10.000000) [01:40:15 -128102.778433] AUTODETECT spr round 1 (radius: 5) [01:42:26 -95438.100425] AUTODETECT spr round 2 (radius: 10) [01:44:47 -73423.787195] AUTODETECT spr round 3 (radius: 15) [01:47:26 -61379.154892] AUTODETECT spr round 4 (radius: 20) [01:48:33] [worker #1] ML tree search #4, logLikelihood: -52206.528196 [01:50:30 -58731.984686] AUTODETECT spr round 5 (radius: 25) [01:53:58 -58520.333784] SPR radius for FAST iterations: 25 (autodetect) [01:53:58 -58520.333784] Model parameter optimization (eps = 3.000000) [01:54:24 -58308.292990] FAST spr round 1 (radius: 25) [01:57:26 -52718.432468] FAST spr round 2 (radius: 25) [01:59:37 -52386.768541] FAST spr round 3 (radius: 25) [02:01:36 -52353.056632] FAST spr round 4 (radius: 25) [02:03:26 -52335.413383] FAST spr round 5 (radius: 25) [02:05:10 -52335.413363] Model parameter optimization (eps = 1.000000) [02:05:24 -52330.761581] SLOW spr round 1 (radius: 5) [02:07:45 -52317.333565] SLOW spr round 2 (radius: 5) [02:09:55 -52314.936272] SLOW spr round 3 (radius: 5) [02:12:02 -52314.935925] SLOW spr round 4 (radius: 10) [02:14:12 -52312.972468] SLOW spr round 5 (radius: 5) [02:16:45 -52309.337091] SLOW spr round 6 (radius: 5) [02:19:04 -52308.966200] SLOW spr round 7 (radius: 5) [02:21:14 -52308.966106] SLOW spr round 8 (radius: 10) [02:23:24 -52306.026970] SLOW spr round 9 (radius: 5) [02:25:55 -52306.026033] SLOW spr round 10 (radius: 10) [02:28:17 -52305.925321] SLOW spr round 11 (radius: 5) [02:30:45 -52305.925177] SLOW spr round 12 (radius: 10) [02:33:06 -52304.113264] SLOW spr round 13 (radius: 5) [02:35:34 -52304.113217] SLOW spr round 14 (radius: 10) [02:37:55 -52304.113213] SLOW spr round 15 (radius: 15) [02:41:03 -52304.113209] SLOW spr round 16 (radius: 20) [02:45:11 -52304.113206] SLOW spr round 17 (radius: 25) [02:50:34 -52302.399205] SLOW spr round 18 (radius: 5) [02:53:15 -52302.399191] SLOW spr round 19 (radius: 10) [02:55:53 -52302.399190] SLOW spr round 20 (radius: 15) [02:58:57 -52302.399189] SLOW spr round 21 (radius: 20) [03:03:05 -52302.399188] SLOW spr round 22 (radius: 25) [03:08:25 -52302.399187] Model parameter optimization (eps = 0.100000) [03:08:31] [worker #0] ML tree search #6, logLikelihood: -52302.328051 [03:08:31 -144751.272610] Initial branch length optimization [03:08:33 -127858.158975] Model parameter optimization (eps = 10.000000) [03:08:59 -127533.855755] AUTODETECT spr round 1 (radius: 5) [03:11:08 -96065.006970] AUTODETECT spr round 2 (radius: 10) [03:13:34 -76855.669654] AUTODETECT spr round 3 (radius: 15) [03:16:15 -69553.417008] AUTODETECT spr round 4 (radius: 20) [03:19:14 -66770.879791] AUTODETECT spr round 5 (radius: 25) [03:23:02 -61912.608838] SPR radius for FAST iterations: 25 (autodetect) [03:23:02 -61912.608838] Model parameter optimization (eps = 3.000000) [03:23:26 -61722.740057] FAST spr round 1 (radius: 25) [03:26:29 -52997.585170] FAST spr round 2 (radius: 25) [03:28:43 -52606.256858] FAST spr round 3 (radius: 25) [03:30:45 -52459.244310] FAST spr round 4 (radius: 25) [03:32:37 -52345.960152] FAST spr round 5 (radius: 25) [03:34:21 -52345.180440] FAST spr round 6 (radius: 25) [03:36:03 -52345.180197] Model parameter optimization (eps = 1.000000) [03:36:17 -52336.255408] SLOW spr round 1 (radius: 5) [03:38:43 -52309.395743] SLOW spr round 2 (radius: 5) [03:41:00 -52297.350140] SLOW spr round 3 (radius: 5) [03:43:11 -52295.976423] SLOW spr round 4 (radius: 5) [03:45:18 -52295.976407] SLOW spr round 5 (radius: 10) [03:47:34 -52289.308784] SLOW spr round 6 (radius: 5) [03:50:14 -52276.421863] SLOW spr round 7 (radius: 5) [03:52:37 -52274.255440] SLOW spr round 8 (radius: 5) [03:54:49 -52272.254294] SLOW spr round 9 (radius: 5) [03:56:57 -52272.254286] SLOW spr round 10 (radius: 10) [03:59:11 -52269.850698] SLOW spr round 11 (radius: 5) [04:01:48 -52265.353471] SLOW spr round 12 (radius: 5) [04:04:07 -52265.353133] SLOW spr round 13 (radius: 10) [04:06:23 -52264.852220] SLOW spr round 14 (radius: 5) [04:08:56 -52264.838956] SLOW spr round 15 (radius: 10) [04:11:23 -52264.791422] SLOW spr round 16 (radius: 15) [04:14:39 -52264.790901] SLOW spr round 17 (radius: 20) [04:19:06 -52254.374859] SLOW spr round 18 (radius: 5) [04:21:52 -52247.846758] SLOW spr round 19 (radius: 5) [04:24:16 -52247.845824] SLOW spr round 20 (radius: 10) [04:26:37 -52242.408684] SLOW spr round 21 (radius: 5) [04:29:12 -52242.180464] SLOW spr round 22 (radius: 5) [04:31:29 -52242.180330] SLOW spr round 23 (radius: 10) [04:33:42 -52242.127227] SLOW spr round 24 (radius: 15) [04:37:05 -52242.126708] SLOW spr round 25 (radius: 20) [04:41:27 -52242.126691] SLOW spr round 26 (radius: 25) [04:47:41 -52237.049773] SLOW spr round 27 (radius: 5) [04:50:24 -52237.049771] SLOW spr round 28 (radius: 10) [04:53:08 -52237.049771] SLOW spr round 29 (radius: 15) [04:56:22 -52237.049771] SLOW spr round 30 (radius: 20) [05:00:50 -52237.049771] SLOW spr round 31 (radius: 25) [05:06:59 -52237.049771] Model parameter optimization (eps = 0.100000) [05:07:16] [worker #0] ML tree search #8, logLikelihood: -52234.774036 [05:07:16 -144049.937362] Initial branch length optimization [05:07:18 -127496.680918] Model parameter optimization (eps = 10.000000) [05:07:50 -127020.598491] AUTODETECT spr round 1 (radius: 5) [05:09:59 -94516.132671] AUTODETECT spr round 2 (radius: 10) [05:12:23 -73442.446756] AUTODETECT spr round 3 (radius: 15) [05:15:08 -62328.912033] AUTODETECT spr round 4 (radius: 20) [05:18:33 -59746.966479] AUTODETECT spr round 5 (radius: 25) [05:22:26 -59354.430145] SPR radius for FAST iterations: 25 (autodetect) [05:22:26 -59354.430145] Model parameter optimization (eps = 3.000000) [05:22:48 -59176.918686] FAST spr round 1 (radius: 25) [05:25:53 -52674.921815] FAST spr round 2 (radius: 25) [05:26:11] [worker #1] ML tree search #5, logLikelihood: -52202.326519 [05:28:04 -52345.312738] FAST spr round 3 (radius: 25) [05:30:02 -52293.812369] FAST spr round 4 (radius: 25) [05:31:49 -52289.107731] FAST spr round 5 (radius: 25) [05:33:31 -52289.107505] Model parameter optimization (eps = 1.000000) [05:33:46 -52279.711638] SLOW spr round 1 (radius: 5) [05:36:05 -52255.105708] SLOW spr round 2 (radius: 5) [05:38:18 -52242.385686] SLOW spr round 3 (radius: 5) [05:40:26 -52240.292706] SLOW spr round 4 (radius: 5) [05:42:31 -52240.292009] SLOW spr round 5 (radius: 10) [05:44:44 -52232.047601] SLOW spr round 6 (radius: 5) [05:47:21 -52229.505955] SLOW spr round 7 (radius: 5) [05:49:40 -52228.671040] SLOW spr round 8 (radius: 5) [05:51:49 -52228.670975] SLOW spr round 9 (radius: 10) [05:54:00 -52228.095961] SLOW spr round 10 (radius: 5) [05:56:32 -52225.956584] SLOW spr round 11 (radius: 5) [05:58:48 -52225.956364] SLOW spr round 12 (radius: 10) [06:01:02 -52225.427855] SLOW spr round 13 (radius: 5) [06:03:33 -52225.427793] SLOW spr round 14 (radius: 10) [06:05:56 -52225.235465] SLOW spr round 15 (radius: 5) [06:08:24 -52225.235366] SLOW spr round 16 (radius: 10) [06:10:45 -52225.182823] SLOW spr round 17 (radius: 15) [06:13:58 -52219.366013] SLOW spr round 18 (radius: 5) [06:16:40 -52217.535896] SLOW spr round 19 (radius: 5) [06:19:01 -52217.446754] SLOW spr round 20 (radius: 10) [06:21:17 -52217.398442] SLOW spr round 21 (radius: 15) [06:24:34 -52217.288378] SLOW spr round 22 (radius: 5) [06:27:17 -52214.585423] SLOW spr round 23 (radius: 5) [06:29:40 -52209.092907] SLOW spr round 24 (radius: 5) [06:31:51 -52209.092907] SLOW spr round 25 (radius: 10) [06:34:02 -52209.092907] SLOW spr round 26 (radius: 15) [06:37:20 -52209.092907] SLOW spr round 27 (radius: 20) [06:41:46 -52200.269771] SLOW spr round 28 (radius: 5) [06:44:27 -52197.547080] SLOW spr round 29 (radius: 5) [06:46:50 -52197.099133] SLOW spr round 30 (radius: 5) [06:49:01 -52197.099133] SLOW spr round 31 (radius: 10) [06:51:12 -52197.099133] SLOW spr round 32 (radius: 15) [06:54:29 -52196.971125] SLOW spr round 33 (radius: 5) [06:57:07 -52196.971113] SLOW spr round 34 (radius: 10) [06:59:37 -52196.971113] SLOW spr round 35 (radius: 15) [07:02:44 -52196.971113] SLOW spr round 36 (radius: 20) [07:07:14 -52196.971113] SLOW spr round 37 (radius: 25) [07:12:44 -52196.971113] Model parameter optimization (eps = 0.100000) [07:12:59] [worker #0] ML tree search #10, logLikelihood: -52195.050694 [07:12:59 -144944.874338] Initial branch length optimization [07:13:01 -128005.226221] Model parameter optimization (eps = 10.000000) [07:13:35 -127622.027143] AUTODETECT spr round 1 (radius: 5) [07:15:44 -97188.679526] AUTODETECT spr round 2 (radius: 10) [07:18:04 -75084.886121] AUTODETECT spr round 3 (radius: 15) [07:20:45 -63680.495131] AUTODETECT spr round 4 (radius: 20) [07:24:01 -59619.880370] AUTODETECT spr round 5 (radius: 25) [07:28:27 -59009.385301] SPR radius for FAST iterations: 25 (autodetect) [07:28:27 -59009.385301] Model parameter optimization (eps = 3.000000) [07:28:52 -58844.346899] FAST spr round 1 (radius: 25) [07:31:55 -52706.722522] FAST spr round 2 (radius: 25) [07:34:08 -52359.536123] FAST spr round 3 (radius: 25) [07:36:07 -52301.580305] FAST spr round 4 (radius: 25) [07:37:55 -52295.890068] FAST spr round 5 (radius: 25) [07:39:37 -52294.726945] FAST spr round 6 (radius: 25) [07:41:18 -52294.726703] Model parameter optimization (eps = 1.000000) [07:41:33 -52290.750399] SLOW spr round 1 (radius: 5) [07:43:51 -52277.583072] SLOW spr round 2 (radius: 5) [07:44:00] [worker #1] ML tree search #7, logLikelihood: -52161.752820 [07:46:05 -52275.046104] SLOW spr round 3 (radius: 5) [07:48:12 -52275.046083] SLOW spr round 4 (radius: 10) [07:50:25 -52273.823657] SLOW spr round 5 (radius: 5) [07:53:02 -52273.461374] SLOW spr round 6 (radius: 5) [07:55:22 -52273.461373] SLOW spr round 7 (radius: 10) [07:57:41 -52273.198802] SLOW spr round 8 (radius: 5) [08:00:15 -52272.488587] SLOW spr round 9 (radius: 5) [08:02:34 -52272.488578] SLOW spr round 10 (radius: 10) [08:04:51 -52272.324729] SLOW spr round 11 (radius: 5) [08:07:29 -52268.635316] SLOW spr round 12 (radius: 5) [08:09:48 -52267.738060] SLOW spr round 13 (radius: 5) [08:12:00 -52267.737996] SLOW spr round 14 (radius: 10) [08:14:14 -52267.675962] SLOW spr round 15 (radius: 15) [08:17:46 -52266.788663] SLOW spr round 16 (radius: 5) [08:20:28 -52266.788645] SLOW spr round 17 (radius: 10) [08:23:06 -52266.788644] SLOW spr round 18 (radius: 15) [08:26:24 -52260.156692] SLOW spr round 19 (radius: 5) [08:29:05 -52260.156670] SLOW spr round 20 (radius: 10) [08:31:42 -52260.156670] SLOW spr round 21 (radius: 15) [08:34:58 -52260.156670] SLOW spr round 22 (radius: 20) [08:39:40 -52260.156670] SLOW spr round 23 (radius: 25) [08:45:54 -52254.278830] SLOW spr round 24 (radius: 5) [08:48:38 -52254.278784] SLOW spr round 25 (radius: 10) [08:51:21 -52250.228667] SLOW spr round 26 (radius: 5) [08:53:50 -52250.228667] SLOW spr round 27 (radius: 10) [08:54:58] [worker #1] ML tree search #9, logLikelihood: -52155.647894 [08:56:13 -52250.228667] SLOW spr round 28 (radius: 15) [08:59:32 -52250.228667] SLOW spr round 29 (radius: 20) [09:04:09 -52250.228667] SLOW spr round 30 (radius: 25) [09:10:29 -52249.896067] SLOW spr round 31 (radius: 5) [09:13:12 -52249.896067] SLOW spr round 32 (radius: 10) [09:15:55 -52249.383216] SLOW spr round 33 (radius: 5) [09:18:26 -52249.249153] SLOW spr round 34 (radius: 5) [09:20:43 -52249.249118] SLOW spr round 35 (radius: 10) [09:22:59 -52248.650948] SLOW spr round 36 (radius: 5) [09:25:32 -52244.480902] SLOW spr round 37 (radius: 5) [09:27:50 -52244.480884] SLOW spr round 38 (radius: 10) [09:30:05 -52244.480884] SLOW spr round 39 (radius: 15) [09:33:31 -52244.480884] SLOW spr round 40 (radius: 20) [09:38:05 -52244.480884] SLOW spr round 41 (radius: 25) [09:44:23 -52244.480884] Model parameter optimization (eps = 0.100000) [09:44:28] [worker #0] ML tree search #12, logLikelihood: -52244.448185 [09:44:29 -145568.058075] Initial branch length optimization [09:44:31 -128330.246973] Model parameter optimization (eps = 10.000000) [09:45:03 -127973.054795] AUTODETECT spr round 1 (radius: 5) [09:47:12 -96525.495443] AUTODETECT spr round 2 (radius: 10) [09:49:36 -72711.551867] AUTODETECT spr round 3 (radius: 15) [09:52:18 -61169.626517] AUTODETECT spr round 4 (radius: 20) [09:55:13 -58885.303222] AUTODETECT spr round 5 (radius: 25) [09:58:52 -58089.909421] SPR radius for FAST iterations: 25 (autodetect) [09:58:52 -58089.909421] Model parameter optimization (eps = 3.000000) [09:59:15 -57901.824710] FAST spr round 1 (radius: 25) [10:02:23 -52747.661118] FAST spr round 2 (radius: 25) [10:04:37 -52315.588054] FAST spr round 3 (radius: 25) [10:06:38 -52273.990787] FAST spr round 4 (radius: 25) [10:08:29 -52268.874040] FAST spr round 5 (radius: 25) [10:10:17 -52264.539067] FAST spr round 6 (radius: 25) [10:12:01 -52263.694414] FAST spr round 7 (radius: 25) [10:13:44 -52263.694313] Model parameter optimization (eps = 1.000000) [10:13:57 -52260.672235] SLOW spr round 1 (radius: 5) [10:16:18 -52225.588297] SLOW spr round 2 (radius: 5) [10:18:33 -52223.126016] SLOW spr round 3 (radius: 5) [10:20:42 -52223.125726] SLOW spr round 4 (radius: 10) [10:22:57 -52220.719203] SLOW spr round 5 (radius: 5) [10:25:35 -52217.234107] SLOW spr round 6 (radius: 5) [10:27:55 -52217.234025] SLOW spr round 7 (radius: 10) [10:30:13 -52216.833449] SLOW spr round 8 (radius: 5) [10:32:46 -52216.833412] SLOW spr round 9 (radius: 10) [10:35:14 -52216.499547] SLOW spr round 10 (radius: 5) [10:37:49 -52215.036833] SLOW spr round 11 (radius: 5) [10:40:08 -52215.036816] SLOW spr round 12 (radius: 10) [10:42:26 -52214.337244] SLOW spr round 13 (radius: 5) [10:44:58 -52214.337119] SLOW spr round 14 (radius: 10) [10:47:26 -52214.039782] SLOW spr round 15 (radius: 5) [10:49:57 -52214.039773] SLOW spr round 16 (radius: 10) [10:52:22 -52213.810917] SLOW spr round 17 (radius: 5) [10:54:53 -52213.810634] SLOW spr round 18 (radius: 10) [10:57:20 -52213.810624] SLOW spr round 19 (radius: 15) [11:00:07] [worker #1] ML tree search #11, logLikelihood: -52200.641066 [11:00:36 -52213.004936] SLOW spr round 20 (radius: 5) [11:03:19 -52210.203774] SLOW spr round 21 (radius: 5) [11:05:41 -52210.203760] SLOW spr round 22 (radius: 10) [11:08:02 -52210.203760] SLOW spr round 23 (radius: 15) [11:11:19 -52209.597410] SLOW spr round 24 (radius: 5) [11:13:59 -52209.597276] SLOW spr round 25 (radius: 10) [11:16:34 -52209.597276] SLOW spr round 26 (radius: 15) [11:19:44 -52209.597276] SLOW spr round 27 (radius: 20) [11:24:17 -52209.597276] SLOW spr round 28 (radius: 25) [11:30:00 -52204.902970] SLOW spr round 29 (radius: 5) [11:32:45 -52204.902970] SLOW spr round 30 (radius: 10) [11:35:27 -52204.902970] SLOW spr round 31 (radius: 15) [11:38:39 -52204.902970] SLOW spr round 32 (radius: 20) [11:43:14 -52204.902970] SLOW spr round 33 (radius: 25) [11:48:58 -52201.326188] SLOW spr round 34 (radius: 5) [11:51:43 -52201.326150] SLOW spr round 35 (radius: 10) [11:54:26 -52201.326150] SLOW spr round 36 (radius: 15) [11:57:37 -52201.326150] SLOW spr round 37 (radius: 20) [12:02:13 -52201.326150] SLOW spr round 38 (radius: 25) [12:07:58 -52201.326150] Model parameter optimization (eps = 0.100000) [12:08:07] [worker #0] ML tree search #14, logLikelihood: -52201.195728 [12:08:07 -145191.519791] Initial branch length optimization [12:08:10 -128604.682964] Model parameter optimization (eps = 10.000000) [12:08:38 -128278.678449] AUTODETECT spr round 1 (radius: 5) [12:10:50 -95824.242018] AUTODETECT spr round 2 (radius: 10) [12:13:13 -74027.174146] AUTODETECT spr round 3 (radius: 15) [12:15:54 -63231.922513] AUTODETECT spr round 4 (radius: 20) [12:19:03 -60790.094088] AUTODETECT spr round 5 (radius: 25) [12:22:27 -60502.206813] SPR radius for FAST iterations: 25 (autodetect) [12:22:27 -60502.206813] Model parameter optimization (eps = 3.000000) [12:22:51 -60304.915384] FAST spr round 1 (radius: 25) [12:25:58 -52645.855954] FAST spr round 2 (radius: 25) [12:28:13 -52298.233968] FAST spr round 3 (radius: 25) [12:30:17 -52272.282006] FAST spr round 4 (radius: 25) [12:32:07 -52270.116309] FAST spr round 5 (radius: 25) [12:33:52 -52269.088168] FAST spr round 6 (radius: 25) [12:35:35 -52269.088138] Model parameter optimization (eps = 1.000000) [12:35:51 -52256.837398] SLOW spr round 1 (radius: 5) [12:38:16 -52228.537975] SLOW spr round 2 (radius: 5) [12:40:32 -52225.264686] SLOW spr round 3 (radius: 5) [12:42:42 -52225.264565] SLOW spr round 4 (radius: 10) [12:44:58 -52221.105885] SLOW spr round 5 (radius: 5) [12:47:40 -52215.420239] SLOW spr round 6 (radius: 5) [12:50:04 -52212.217629] SLOW spr round 7 (radius: 5) [12:52:18 -52212.217625] SLOW spr round 8 (radius: 10) [12:54:34 -52211.124590] SLOW spr round 9 (radius: 5) [12:57:12 -52211.124494] SLOW spr round 10 (radius: 10) [12:59:42 -52210.375559] SLOW spr round 11 (radius: 5) [13:02:16 -52210.375522] SLOW spr round 12 (radius: 10) [13:04:43 -52209.625346] SLOW spr round 13 (radius: 5) [13:07:17 -52208.923977] SLOW spr round 14 (radius: 5) [13:09:36 -52208.923938] SLOW spr round 15 (radius: 10) [13:11:54 -52208.662173] SLOW spr round 16 (radius: 5) [13:14:30 -52207.066549] SLOW spr round 17 (radius: 5) [13:16:51 -52207.066547] SLOW spr round 18 (radius: 10) [13:19:09 -52206.600635] SLOW spr round 19 (radius: 5) [13:21:46 -52205.392079] SLOW spr round 20 (radius: 5) [13:24:07 -52205.392076] SLOW spr round 21 (radius: 10) [13:26:24 -52205.318881] SLOW spr round 22 (radius: 15) [13:29:52 -52203.129516] SLOW spr round 23 (radius: 5) [13:32:36 -52203.046382] SLOW spr round 24 (radius: 10) [13:35:15 -52203.029576] SLOW spr round 25 (radius: 15) [13:38:31 -52201.142253] SLOW spr round 26 (radius: 5) [13:41:21 -52198.110429] SLOW spr round 27 (radius: 5) [13:43:46 -52198.110350] SLOW spr round 28 (radius: 10) [13:46:07 -52198.110350] SLOW spr round 29 (radius: 15) [13:49:31 -52197.756834] SLOW spr round 30 (radius: 5) [13:52:18 -52193.188637] SLOW spr round 31 (radius: 5) [13:54:43 -52193.188632] SLOW spr round 32 (radius: 10) [13:54:53] [worker #1] ML tree search #13, logLikelihood: -52188.792697 [13:57:04 -52191.359855] SLOW spr round 33 (radius: 5) [13:59:40 -52191.359843] SLOW spr round 34 (radius: 10) [14:02:08 -52191.342646] SLOW spr round 35 (radius: 15) [14:05:29 -52191.342633] SLOW spr round 36 (radius: 20) [14:10:23 -52170.973864] SLOW spr round 37 (radius: 5) [14:13:14 -52168.063137] SLOW spr round 38 (radius: 5) [14:15:46 -52165.301969] SLOW spr round 39 (radius: 5) [14:18:03 -52165.301950] SLOW spr round 40 (radius: 10) [14:20:20 -52165.106810] SLOW spr round 41 (radius: 5) [14:22:57 -52163.921495] SLOW spr round 42 (radius: 5) [14:25:19 -52163.921493] SLOW spr round 43 (radius: 10) [14:27:38 -52163.921493] SLOW spr round 44 (radius: 15) [14:31:07 -52163.921492] SLOW spr round 45 (radius: 20) [14:35:52 -52163.365096] SLOW spr round 46 (radius: 5) [14:38:40 -52163.365096] SLOW spr round 47 (radius: 10) [14:41:23 -52163.365096] SLOW spr round 48 (radius: 15) [14:44:42 -52163.365096] SLOW spr round 49 (radius: 20) [14:49:31 -52163.365096] SLOW spr round 50 (radius: 25) [14:55:23 -52163.365096] Model parameter optimization (eps = 0.100000) [14:55:34] [worker #0] ML tree search #16, logLikelihood: -52163.259015 [14:55:34 -145238.148966] Initial branch length optimization [14:55:37 -128265.308145] Model parameter optimization (eps = 10.000000) [14:56:15 -127790.290075] AUTODETECT spr round 1 (radius: 5) [14:58:27 -97090.680726] AUTODETECT spr round 2 (radius: 10) [15:00:51 -76467.285992] AUTODETECT spr round 3 (radius: 15) [15:03:38 -64454.425312] AUTODETECT spr round 4 (radius: 20) [15:06:52 -60582.678748] AUTODETECT spr round 5 (radius: 25) [15:10:50 -60166.609021] SPR radius for FAST iterations: 25 (autodetect) [15:10:50 -60166.609021] Model parameter optimization (eps = 3.000000) [15:11:13 -59980.842613] FAST spr round 1 (radius: 25) [15:14:20 -52772.947079] FAST spr round 2 (radius: 25) [15:16:37 -52372.669777] FAST spr round 3 (radius: 25) [15:18:39 -52340.194944] FAST spr round 4 (radius: 25) [15:20:33 -52326.256378] FAST spr round 5 (radius: 25) [15:22:20 -52324.410870] FAST spr round 6 (radius: 25) [15:24:04 -52324.410844] Model parameter optimization (eps = 1.000000) [15:24:25 -52312.892842] SLOW spr round 1 (radius: 5) [15:26:49 -52283.754948] SLOW spr round 2 (radius: 5) [15:29:09 -52273.217281] SLOW spr round 3 (radius: 5) [15:31:24 -52272.548905] SLOW spr round 4 (radius: 5) [15:31:36] [worker #1] ML tree search #15, logLikelihood: -52179.925638 [15:33:34 -52272.548816] SLOW spr round 5 (radius: 10) [15:35:52 -52265.549051] SLOW spr round 6 (radius: 5) [15:38:36 -52263.842108] SLOW spr round 7 (radius: 5) [15:40:59 -52263.842030] SLOW spr round 8 (radius: 10) [15:43:20 -52262.630074] SLOW spr round 9 (radius: 5) [15:45:57 -52262.620011] SLOW spr round 10 (radius: 10) [15:48:28 -52261.627165] SLOW spr round 11 (radius: 5) [15:51:04 -52261.627101] SLOW spr round 12 (radius: 10) [15:53:33 -52261.486520] SLOW spr round 13 (radius: 5) [15:56:10 -52261.486421] SLOW spr round 14 (radius: 10) [15:58:39 -52259.691610] SLOW spr round 15 (radius: 5) [16:01:21 -52255.498973] SLOW spr round 16 (radius: 5) [16:03:45 -52254.670396] SLOW spr round 17 (radius: 5) [16:06:01 -52254.670396] SLOW spr round 18 (radius: 10) [16:08:18 -52254.670396] SLOW spr round 19 (radius: 15) [16:11:50 -52238.441494] SLOW spr round 20 (radius: 5) [16:14:38 -52233.955167] SLOW spr round 21 (radius: 5) [16:17:05 -52233.309328] SLOW spr round 22 (radius: 5) [16:19:22 -52233.309311] SLOW spr round 23 (radius: 10) [16:21:40 -52233.309311] SLOW spr round 24 (radius: 15) [16:25:11 -52233.115047] SLOW spr round 25 (radius: 5) [16:28:00 -52226.812352] SLOW spr round 26 (radius: 5) [16:30:27 -52224.256225] SLOW spr round 27 (radius: 5) [16:32:44 -52224.256144] SLOW spr round 28 (radius: 10) [16:35:02 -52222.263846] SLOW spr round 29 (radius: 5) [16:37:44 -52216.741694] SLOW spr round 30 (radius: 5) [16:40:06 -52216.741661] SLOW spr round 31 (radius: 10) [16:42:26 -52215.062528] SLOW spr round 32 (radius: 5) [16:45:03 -52212.687729] SLOW spr round 33 (radius: 5) [16:47:25 -52212.687728] SLOW spr round 34 (radius: 10) [16:49:45 -52210.583752] SLOW spr round 35 (radius: 5) [16:52:20 -52210.583752] SLOW spr round 36 (radius: 10) [16:54:50 -52208.897864] SLOW spr round 37 (radius: 5) [16:57:26 -52206.279683] SLOW spr round 38 (radius: 5) [16:59:47 -52206.279671] SLOW spr round 39 (radius: 10) [17:02:06 -52206.147351] SLOW spr round 40 (radius: 5) [17:04:43 -52206.147234] SLOW spr round 41 (radius: 10) [17:07:13 -52206.147232] SLOW spr round 42 (radius: 15) [17:10:33 -52206.147232] SLOW spr round 43 (radius: 20) [17:15:25 -52199.851934] SLOW spr round 44 (radius: 5) [17:18:17 -52171.015649] SLOW spr round 45 (radius: 5) [17:20:44 -52171.015642] SLOW spr round 46 (radius: 10) [17:23:07 -52171.015641] SLOW spr round 47 (radius: 15) [17:26:31 -52171.015641] SLOW spr round 48 (radius: 20) [17:31:19 -52171.015641] SLOW spr round 49 (radius: 25) [17:37:23 -52171.015641] Model parameter optimization (eps = 0.100000) [17:37:36] [worker #0] ML tree search #18, logLikelihood: -52168.468374 [17:37:36 -144882.082616] Initial branch length optimization [17:37:38 -128396.833541] Model parameter optimization (eps = 10.000000) [17:38:24 -127905.924721] AUTODETECT spr round 1 (radius: 5) [17:40:37 -95336.908802] AUTODETECT spr round 2 (radius: 10) [17:43:01 -74179.064402] AUTODETECT spr round 3 (radius: 15) [17:45:45 -62234.857517] AUTODETECT spr round 4 (radius: 20) [17:48:45 -59654.093765] AUTODETECT spr round 5 (radius: 25) [17:52:24 -59175.991539] SPR radius for FAST iterations: 25 (autodetect) [17:52:24 -59175.991539] Model parameter optimization (eps = 3.000000) [17:52:46 -58939.502296] FAST spr round 1 (radius: 25) [17:55:51 -52727.998174] FAST spr round 2 (radius: 25) [17:58:10 -52386.820167] FAST spr round 3 (radius: 25) [18:00:16 -52353.787229] FAST spr round 4 (radius: 25) [18:02:11 -52343.543016] FAST spr round 5 (radius: 25) [18:03:57 -52343.542823] Model parameter optimization (eps = 1.000000) [18:04:14 -52339.528939] SLOW spr round 1 (radius: 5) [18:06:39 -52329.628295] SLOW spr round 2 (radius: 5) [18:08:55 -52326.085279] SLOW spr round 3 (radius: 5) [18:11:06 -52325.013994] SLOW spr round 4 (radius: 5) [18:13:16 -52324.177880] SLOW spr round 5 (radius: 5) [18:15:25 -52324.101639] SLOW spr round 6 (radius: 10) [18:17:37 -52318.747388] SLOW spr round 7 (radius: 5) [18:20:15 -52315.673072] SLOW spr round 8 (radius: 5) [18:22:35 -52315.610037] SLOW spr round 9 (radius: 10) [18:24:52 -52313.607910] SLOW spr round 10 (radius: 5) [18:27:25 -52313.607887] SLOW spr round 11 (radius: 10) [18:29:51 -52311.811981] SLOW spr round 12 (radius: 5) [18:32:23 -52311.811961] SLOW spr round 13 (radius: 10) [18:34:48 -52310.947749] SLOW spr round 14 (radius: 5) [18:37:21 -52310.947737] SLOW spr round 15 (radius: 10) [18:38:30] [worker #1] ML tree search #17, logLikelihood: -52134.908594 [18:39:47 -52310.890540] SLOW spr round 16 (radius: 15) [18:43:00 -52305.169565] SLOW spr round 17 (radius: 5) [18:45:44 -52303.788324] SLOW spr round 18 (radius: 5) [18:48:09 -52303.161812] SLOW spr round 19 (radius: 5) [18:50:23 -52303.161707] SLOW spr round 20 (radius: 10) [18:52:40 -52300.926747] SLOW spr round 21 (radius: 5) [18:55:14 -52300.926747] SLOW spr round 22 (radius: 10) [18:57:42 -52300.926747] SLOW spr round 23 (radius: 15) [19:00:54 -52300.856885] SLOW spr round 24 (radius: 20) [19:04:54 -52300.856884] SLOW spr round 25 (radius: 25) [19:10:05 -52300.276946] SLOW spr round 26 (radius: 5) [19:12:49 -52300.276945] SLOW spr round 27 (radius: 10) [19:15:34 -52299.387990] SLOW spr round 28 (radius: 5) [19:18:06 -52299.387984] SLOW spr round 29 (radius: 10) [19:20:31 -52299.387984] SLOW spr round 30 (radius: 15) [19:23:45 -52299.387984] SLOW spr round 31 (radius: 20) [19:27:47 -52297.806413] SLOW spr round 32 (radius: 5) [19:30:33 -52296.070169] SLOW spr round 33 (radius: 5) [19:32:59 -52296.070159] SLOW spr round 34 (radius: 10) [19:35:20 -52294.587019] SLOW spr round 35 (radius: 5) [19:37:52 -52294.587017] SLOW spr round 36 (radius: 10) [19:40:18 -52294.587017] SLOW spr round 37 (radius: 15) [19:43:31 -52294.587017] SLOW spr round 38 (radius: 20) [19:47:31 -52294.587017] SLOW spr round 39 (radius: 25) [19:52:42 -52294.587017] Model parameter optimization (eps = 0.100000) [19:52:49] [worker #0] ML tree search #20, logLikelihood: -52294.549720 [20:48:46] [worker #1] ML tree search #19, logLikelihood: -52184.440555 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.264910,0.479008) (0.175164,0.510443) (0.476752,0.975607) (0.083174,3.830177) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -52134.908594 AIC score: 108279.817187 / AICc score: 8152339.817187 / BIC score: 113868.738132 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=120). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/3_mltree/A0A087WSY6.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/3_mltree/A0A087WSY6.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/3_mltree/A0A087WSY6.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/A0A087WSY6/3_mltree/A0A087WSY6.raxml.log Analysis started: 16-Jul-2021 09:12:17 / finished: 17-Jul-2021 06:01:05 Elapsed time: 74927.089 seconds (this run) / 83117.818 seconds (total with restarts)